pycom15g08680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010821
Physical Location & Seq
Reverse (-)
5567149 .. 5570262
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGGCTACTTCTGTCAAGGTGAAGAGCGGCGGCACCCTGCAGGATGGTTCTTCAAAGGGAAAGATTGGATATTCTGTCACTAAGAAGAAGATTGAGAGCTCTTCAAGCAAGCAGCAGGCAGCTGATTCCAAGCAGAAATCTGTGCAGACTGTTACAATAACTGAGGTAAAATCAAAATTGAATTCAGTATCAAAGACGATAACAAAGAAAACCACGACAAAAGTGAGAGAGAAGAAAGTATACACTTTGGCAGGCCAGAAGTTTGATCCTCCAGAAGAGAGAGAACCTTTGAGGATTTTTTACGAGTCATTGTCCAAACAGATACCAACAAGTGAAATGGCAGAATTCTGGATGATGGAGCATGGCCTTTTGTCCCCTGAAAGATCCAGAAAGGCATACGAGAAGAAGCAGAGAAAGCAAAAGCAACTCCGTTTGGGAACCCCTATTAAGTCTACACCAAAACCACCAAGTAAACCTGAGAGTTCACAGAGGCCACAACAGCAGGCATCTAAGAATGGCGATGTAAAAGCCATGAAGAGAGTTATCAAAGAGAGCGACGATGACGACGATTTCATTTTAAGTCCCAAGAGAAGGAGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.55

Weight (kDa)

10.11

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 27
AccI GTMKAC 2 cut(s) 240, 452
AciI CCGC 2 cut(s) 27, 30
AclWI GGATC 2 cut(s) 260, 378
AcsI RAATTY 2 cut(s) 181, 344
AfiI CCNNNNNNNGG 1 cut(s) 591
AgsI TTSAA 3 cut(s) 54, 105, 181
AluBI AGCT 2 cut(s) 99, 122
AluI AGCT 2 cut(s) 99, 122
Alw21I GWGCWC 1 cut(s) 101
AlwI GGATC 2 cut(s) 260, 378
AoxI GGCC 3 cut(s) 253, 364, 491
ApeKI GCWGC 2 cut(s) 112, 119
ApoI RAATTY 2 cut(s) 181, 344
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 124, 131
BccI CCATC 2 cut(s) 38, 349
BfmI CTRYAG 1 cut(s) 38
BisI GCNGC 4 cut(s) 28, 31, 113, 120
BlsI GCNGC 4 cut(s) 29, 32, 114, 121
BmiI GGNNCC 2 cut(s) 34, 439
BmsI GCATC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 591
BseGI GGATG 2 cut(s) 49, 357
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 153, 468
BseXI GCAGC 2 cut(s) 124, 131
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 3 cut(s) 255, 366, 493
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 101
BslFI GGGAC 2 cut(s) 358, 567
BslI CCNNNNNNNGG 1 cut(s) 591
BsmFI GGGAC 2 cut(s) 358, 567
BsnI GGCC 3 cut(s) 255, 366, 493
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 265, 383
BspACI CCGC 2 cut(s) 27, 30
BspANI GGCC 3 cut(s) 255, 366, 493
BspCNI CTCAG 2 cut(s) 154, 469
BspLI GGNNCC 2 cut(s) 34, 439
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 2 cut(s) 260, 378
BspQI GCTCTTC 2 cut(s) 17, 106
BspT107I GGYRCC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 27
BssMI GATC 2 cut(s) 265, 383
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 4 cut(s) 17, 106, 270, 530
BstC8I GCNNGC 4 cut(s) 110, 117, 253, 504
BstDEI CTNAG 4 cut(s) 81, 162, 477, 510
BstF5I GGATG 2 cut(s) 49, 357
BstKTI GATC 2 cut(s) 268, 386
BstMBI GATC 2 cut(s) 265, 383
BstMWI GCNNNNNNNGC 3 cut(s) 105, 415, 499
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 124, 131
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BstZ17I GTATAC 1 cut(s) 241
BsuRI GGCC 3 cut(s) 255, 366, 493
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 49, 357
Cac8I GCNNGC 4 cut(s) 110, 117, 253, 504
CviAII CATG 2 cut(s) 362, 532
CviJI RGCY 7 cut(s) 5, 99, 122, 255, 366, 493, 530
CviKI_1 RGCY 7 cut(s) 5, 99, 122, 255, 366, 493, 530
DdeI CTNAG 4 cut(s) 81, 162, 477, 510
DpnI GATC 2 cut(s) 267, 385
DpnII GATC 2 cut(s) 265, 383
Eam1104I CTCTTC 4 cut(s) 17, 106, 270, 530
EarI CTCTTC 4 cut(s) 17, 106, 270, 530
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRI GAATTC 2 cut(s) 181, 344
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 2 cut(s) 365, 535
FaiI YATR 4 cut(s) 241, 363, 397, 533
FaqI GGGAC 2 cut(s) 358, 567
FatI CATG 2 cut(s) 361, 531
FblI GTMKAC 2 cut(s) 240, 452
Fnu4HI GCNGC 4 cut(s) 28, 31, 113, 120
FokI GGATG 2 cut(s) 56, 364
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 28, 31, 113, 120
GluI GCNGC 4 cut(s) 28, 31, 113, 120
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 3 cut(s) 255, 366, 493
Hin1II CATG 2 cut(s) 365, 535
HinfI GANTC 2 cut(s) 125, 305
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 4 cut(s) 241, 453, 473, 485
Hpy188III TCNNGA 3 cut(s) 272, 349, 387
Hpy8I GTNNAC 4 cut(s) 241, 453, 473, 485
Hpy99I CGWCG 2 cut(s) 560, 569
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 40, 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 415, 499
HpyF3I CTNAG 4 cut(s) 81, 162, 477, 510
Hsp92II CATG 2 cut(s) 365, 535
Kzo9I GATC 2 cut(s) 265, 383
LguI GCTCTTC 2 cut(s) 17, 106
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 124, 131
LweI GCATC 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 76, 151
MalI GATC 2 cut(s) 267, 385
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 265, 383
MboII GAAGA 9 cut(s) 34, 42, 93, 97, 100, 244, 287, 415, 547
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 3 cut(s) 176, 181, 344
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 4 cut(s) 157, 279, 285, 483
MseI TTAA 2 cut(s) 447, 578
MspA1I CMGCKG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 105, 415, 499
NdeII GATC 2 cut(s) 265, 383
NlaIII CATG 2 cut(s) 365, 535
NlaIV GGNNCC 2 cut(s) 34, 439
NmuCI GTSAC 1 cut(s) 76
PciSI GCTCTTC 2 cut(s) 17, 106
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 29, 32, 114, 121
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 34, 439
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 2 cut(s) 17, 106
SaqAI TTAA 2 cut(s) 447, 578
SatI GCNGC 4 cut(s) 28, 31, 113, 120
Sau3AI GATC 2 cut(s) 265, 383
SbfI CCTGCAGG 1 cut(s) 42
SchI GAGTC 1 cut(s) 314
SdaI CCTGCAGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 101
SetI ASST 6 cut(s) 21, 101, 124, 168, 289, 478
SfaNI GCATC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 38
Sse8387I CCTGCAGG 1 cut(s) 42
Sse9I AATT 3 cut(s) 176, 181, 344
SsiI CCGC 2 cut(s) 27, 30
SstI GAGCTC 1 cut(s) 101
TaaI ACNGT 1 cut(s) 151
TasI AATT 3 cut(s) 176, 181, 344
TauI GCSGC 2 cut(s) 30, 33
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 447, 578
Tru9I TTAA 2 cut(s) 447, 578
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 112, 119
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 548, 562
TspGWI ACGGA 1 cut(s) 419
XapI RAATTY 2 cut(s) 181, 344
XmiI GTMKAC 2 cut(s) 240, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.