pycom15g08870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015245
Physical Location & Seq
Forward (+)
5717009 .. 5719426
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGGAGATAATCGGCGACGCGCTTCGCCAGGCGTTCATGCCGAAGCACGAGTACGAGAGCCTCCGGGCGGAAGACAGAGCGTGGGTGAAACTTCAGAAACCACTGCTAATGGCGTCCATGGCGTTGGTCTGCCTCGTAGTTGTTGTGTGCACGGTTATCAGCTTGAACATTGTGTTTCCGGCCGACCCGGCTAAGCGGCCGTTCTGCGGCGACCGGAGGCTTAATTCGTTGCCGATGAATGTGAGAGGCGGCGATTCGGATCCGTTTCCGGGAGCGTTTTATCTTACGGATCAGGAAATTGCGGATTACTACTGGATGGTTGTGTTCATTCCCACCTTGATCATTTTCTTGGCTACTTTCATGTATCTCGTTGCGGGAATCACCGTTGCTTATTCTGCTCCAACAAGACATGGATGCTTAAAAGTTGTTGAAAATAACTACTGTGCTTCAAAAAGAGGTGGAGTTCGATGTCTATCGATTCTGAATGCCGTCTTTGCTATCATATTTGGTCTACTTGCATTGTTTCTTGGCTCTAGCCTCCTAACACAAGGAAGCTCCTGCTCTTTGCCCTTGTTCTGGTGCTATGAGTTTGGATCTTGGGGGATGGTTGTTCTATATGGAGGAACTGCCTTCTTTCTAAGAAGGAGAGCAGCTGCAATCCTTGATGAGGGTGAGTTTGGCGGTCGAAACCTAGGTCTTGAAATGTTGGAGAACCCCGTAGAAGTGTCACCAGAGGTGGAAAGGCGGGTTAACGAAGGGTTTAAAGCATGGATGGGGTCTTCACTCCTATCTTCTGATGAAGAAGATGAACCTGACAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

5.0

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32750
fragaria_vesca FvH4_2g35990
malus_domestica MD08G1117000.v1.1 MD15G1096600.v1.1
prunus_persica Prupe.1G451500_v2.0.a1
pyrus_communis pycom08g09750 pycom15g08870
rosa_chinensis RchiOBHm_Chr6g0305881
rosa_laevigata RLG00000010850
rosa_roxburghii Rroxscaffold_7G00162250
rosa_rugosa Rorug06G0344600
rosa_samantha Rh6AG456500 Rh6BG444800 Rh6CG470400 Rh6DG457100
rosa_wichuraiana Rw6G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 20
AciI CCGC 8 cut(s) 68, 196, 207, 249, 302, 374, 681, 745
AclWI GGATC 4 cut(s) 254, 267, 297, 601
AcoI YGGCCR 2 cut(s) 180, 197
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 5 cut(s) 67, 206, 269, 576, 667
AgsI TTSAA 4 cut(s) 166, 431, 450, 701
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 162, 555, 653
AluI AGCT 3 cut(s) 162, 555, 653
Alw21I GWGCWC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 148
AlwI GGATC 4 cut(s) 254, 267, 297, 601
AoxI GGCC 2 cut(s) 180, 197
ApaLI GTGCAC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 650, 653
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
AspA2I CCTAGG 1 cut(s) 691
AspLEI GCGC 1 cut(s) 22
AsuC2I CCSGG 3 cut(s) 65, 188, 270
AsuHPI GGTGA 4 cut(s) 97, 373, 683, 720
AvrII CCTAGG 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 259
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 78, 771
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 640, 662
BccI CCATC 3 cut(s) 310, 598, 766
BceAI ACGGC 2 cut(s) 184, 473
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 3 cut(s) 65, 188, 270
BfaI CTAG 2 cut(s) 534, 692
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 5 cut(s) 197, 208, 250, 651, 654
BlnI CCTAGG 1 cut(s) 691
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 5 cut(s) 198, 209, 251, 652, 655
Bme1390I CCNGG 4 cut(s) 29, 65, 188, 270
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 4 cut(s) 29, 65, 188, 270
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 2 cut(s) 78, 771
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 3 cut(s) 65, 188, 270
Bsa29I ATCGAT 1 cut(s) 476
BsaBI GATNNNNATC 2 cut(s) 258, 472
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 117, 691
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 206, 269, 576, 667
Bse1I ACTGG 1 cut(s) 317
Bse8I GATNNNNATC 2 cut(s) 258, 472
BseBI CCWGG 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 117, 691
BseGI GGATG 4 cut(s) 321, 419, 609, 777
BseJI GATNNNNATC 2 cut(s) 258, 472
BseLI CCNNNNNNNGG 5 cut(s) 67, 206, 269, 576, 667
BseNI ACTGG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 152
BseX3I CGGCCG 2 cut(s) 180, 197
BseXI GCAGC 2 cut(s) 640, 662
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 4 cut(s) 183, 200, 214, 685
BshFI GGCC 2 cut(s) 182, 199
BshVI ATCGAT 1 cut(s) 476
BsiEI CGRYCG 4 cut(s) 183, 200, 214, 685
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 5 cut(s) 64, 179, 188, 214, 269
BslI CCNNNNNNNGG 5 cut(s) 67, 206, 269, 576, 667
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 2 cut(s) 182, 199
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 4 cut(s) 259, 289, 339, 593
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 8 cut(s) 68, 196, 207, 249, 302, 374, 681, 745
BspANI GGCC 2 cut(s) 182, 199
BspDI ATCGAT 1 cut(s) 476
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 4 cut(s) 254, 267, 297, 601
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 117, 691
BssMI GATC 4 cut(s) 259, 289, 339, 593
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 117, 691
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 154, 385, 443, 818
BstACI GRCGYC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 192, 638
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 4 cut(s) 321, 419, 609, 777
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 262, 292, 342, 596
BstMBI GATC 4 cut(s) 259, 289, 339, 593
BstMCI CGRYCG 4 cut(s) 183, 200, 214, 685
BstMWI GCNNNNNNNGC 4 cut(s) 119, 188, 395, 494
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 27, 63, 186, 268
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 640, 662
BstV2I GAAGAC 2 cut(s) 78, 771
BstX2I RGATCY 2 cut(s) 259, 593
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 259, 593
BstZI CGGCCG 2 cut(s) 180, 197
Bsu15I ATCGAT 1 cut(s) 476
BsuRI GGCC 2 cut(s) 182, 199
BsuTUI ATCGAT 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 321, 419, 609, 777
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 476
CseI GACGC 2 cut(s) 26, 102
Csp6I GTAC 1 cut(s) 52
CviAII CATG 5 cut(s) 37, 118, 361, 410, 768
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 192, 638
DpnI GATC 4 cut(s) 261, 291, 341, 595
DpnII GATC 4 cut(s) 259, 289, 339, 593
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 2 cut(s) 180, 197
EagI CGGCCG 2 cut(s) 180, 197
EciI GGCGGA 1 cut(s) 83
EclXI CGGCCG 2 cut(s) 180, 197
Eco130I CCWWGG 2 cut(s) 117, 691
Eco52I CGGCCG 2 cut(s) 180, 197
Eco57I CTGAAG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 117, 691
ErhI CCWWGG 2 cut(s) 117, 691
FaeI CATG 5 cut(s) 40, 121, 364, 413, 771
FaiI YATR 9 cut(s) 38, 119, 362, 411, 503, 585, 616, 618, 769
FatI CATG 5 cut(s) 36, 117, 360, 409, 767
FauI CCCGC 2 cut(s) 367, 738
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 5 cut(s) 197, 208, 250, 651, 654
FokI GGATG 4 cut(s) 328, 426, 616, 784
Fsp4HI GCNGC 5 cut(s) 197, 208, 250, 651, 654
FspBI CTAG 2 cut(s) 534, 692
GlaI GCGC 1 cut(s) 21
GluI GCNGC 5 cut(s) 197, 208, 250, 651, 654
HaeIII GGCC 2 cut(s) 182, 199
HapII CCGG 5 cut(s) 64, 179, 188, 214, 269
HgaI GACGC 2 cut(s) 26, 102
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 5 cut(s) 40, 121, 364, 413, 771
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 3 cut(s) 254, 378, 478
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 5 cut(s) 64, 179, 188, 214, 269
HphI GGTGA 4 cut(s) 97, 373, 683, 720
Hpy166II GTNNAC 3 cut(s) 150, 512, 751
Hpy188I TCNGA 4 cut(s) 96, 259, 483, 796
Hpy188III TCNNGA 2 cut(s) 293, 698
Hpy8I GTNNAC 3 cut(s) 150, 512, 751
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 636, 640, 749
HpyCH4III ACNGT 4 cut(s) 154, 385, 443, 818
HpyCH4V TGCA 3 cut(s) 150, 518, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 188, 395, 494
HpyF3I CTNAG 2 cut(s) 192, 638
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 5 cut(s) 40, 121, 364, 413, 771
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 4 cut(s) 259, 289, 339, 593
LmnI GCTCC 3 cut(s) 272, 403, 560
Lsp1109I GCAGC 2 cut(s) 640, 662
LweI GCATC 1 cut(s) 404
MaeI CTAG 2 cut(s) 534, 692
MaeIII GTNAC 1 cut(s) 726
MalI GATC 4 cut(s) 261, 291, 341, 595
MboI GATC 4 cut(s) 259, 289, 339, 593
MboII GAAGA 5 cut(s) 83, 771, 783, 812, 815
MflI RGATCY 2 cut(s) 259, 593
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 223, 297
MmeI TCCRAC 2 cut(s) 425, 687
MnlI CCTC 9 cut(s) 71, 143, 210, 239, 449, 548, 614, 661, 727
MseI TTAA 4 cut(s) 222, 419, 750, 762
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 5 cut(s) 64, 179, 188, 214, 269
MspR9I CCNGG 4 cut(s) 29, 65, 188, 270
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 119, 188, 395, 494
NciI CCSGG 3 cut(s) 65, 188, 270
NcoI CCATGG 1 cut(s) 117
NdeII GATC 4 cut(s) 259, 289, 339, 593
NlaIII CATG 5 cut(s) 40, 121, 364, 413, 771
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 726
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 3 cut(s) 254, 378, 478
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 5 cut(s) 198, 209, 251, 652, 655
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 261
PsuI RGATCY 2 cut(s) 259, 593
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 4 cut(s) 222, 419, 750, 762
SatI GCNGC 5 cut(s) 197, 208, 250, 651, 654
Sau3AI GATC 4 cut(s) 259, 289, 339, 593
ScrFI CCNGG 4 cut(s) 29, 65, 188, 270
SduI GDGCHC 1 cut(s) 152
SetI ASST 9 cut(s) 164, 338, 460, 557, 655, 693, 697, 738, 814
SfaNI GCATC 1 cut(s) 404
Sse9I AATT 2 cut(s) 223, 297
SsiI CCGC 8 cut(s) 68, 196, 207, 249, 302, 374, 681, 745
SspMI CTAG 2 cut(s) 534, 692
StyD4I CCNGG 4 cut(s) 27, 63, 186, 268
StyI CCWWGG 2 cut(s) 117, 691
TaaI ACNGT 4 cut(s) 154, 385, 443, 818
TaqI TCGA 3 cut(s) 466, 476, 685
TasI AATT 2 cut(s) 223, 297
TauI GCSGC 3 cut(s) 199, 210, 252
TfiI GAWTC 3 cut(s) 254, 378, 478
Tru1I TTAA 4 cut(s) 222, 419, 750, 762
Tru9I TTAA 4 cut(s) 222, 419, 750, 762
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 6 cut(s) 25, 251, 316, 349, 813, 822
TspGWI ACGGA 2 cut(s) 252, 302
TspRI CASTG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 665
XmaJI CCTAGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 2 cut(s) 534, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.