pycom15g09210
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009403
Physical Location & Seq
Forward (+)
5935740 .. 5937760
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGCGAACCCTGGGAACTTCCTGCAAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTCTTCAGCCTACGAGATCGAAAGTACCCAACGGGAGTGAGAACAAACCGAGCAACAAACATAGGTTACTGGAAGACCACAGGGAAAGACAAGGATCGATCTTCAACAGTGTCACATCTGAGCTAGCTGGGATGAAAAAGACCCTTGTTTTCTACAGAGGCCGAGCTCCTCGTGGTGAAAAATCCAACTGGGTCATGCACGAATATCGGATTCATTCTAAATCCGGCTTTAGCACATCCAAGGATGAGTGGGTGATTTGTCGAGTCTTCCAAAAGAGTGCAGGTATTAAAAAGTACCCAACGAACCAATCAAGAGCGGCCAATCCGTACAACCTAGAAATAGGTCCAAGTATGGTACCATCACCCCTAATGCAGCTAGGTCGATCCAAACCACCATCAGTTCCCCTATGGCAGAAATTACATGACAAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

10.26

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 47 - 89 3.9e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 371
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 157, 432
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 5 cut(s) 54, 81, 350, 383, 411
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 178, 182, 221, 430
AluI AGCT 4 cut(s) 178, 182, 221, 430
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 2 cut(s) 157, 432
AoxI GGCC 2 cut(s) 214, 372
ApeKI GCWGC 1 cut(s) 427
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 242, 319, 408
AsuNHI GCTAGC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 135, 313
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 421, 457
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 416, 450
BciT130I CCWGG 1 cut(s) 11
BfaI CTAG 3 cut(s) 179, 389, 431
BfmI CTRYAG 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 2 cut(s) 372, 428
BlsI GCNGC 2 cut(s) 373, 429
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 135, 313
Bsa29I ATCGAT 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 9, 10, 294
Bse1I ACTGG 2 cut(s) 129, 248
BseBI CCWGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 9, 10, 294
BseGI GGATG 3 cut(s) 192, 290, 304
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 129, 248
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 439
BseYI CCCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 216, 374
BshNI GGYRCC 1 cut(s) 409
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 279
BsnI GGCC 2 cut(s) 216, 374
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 4 cut(s) 71, 149, 153, 437
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 216, 374
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 157, 432
BspT107I GGYRCC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 371
BsrI ACTGG 2 cut(s) 129, 248
BssECI CCNNGG 3 cut(s) 9, 10, 294
BssMI GATC 4 cut(s) 71, 149, 153, 437
BssSI CACGAG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 192, 290, 304
BstKTI GATC 4 cut(s) 74, 152, 156, 440
BstMBI GATC 4 cut(s) 71, 149, 153, 437
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 2 cut(s) 135, 313
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 2 cut(s) 216, 374
BsuTUI ATCGAT 1 cut(s) 152
BtsCI GGATG 3 cut(s) 192, 290, 304
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 152
Csp6I GTAC 5 cut(s) 53, 80, 349, 382, 410
CviAII CATG 2 cut(s) 250, 476
CviJI RGCY 8 cut(s) 64, 178, 182, 216, 221, 282, 374, 430
CviKI_1 RGCY 8 cut(s) 64, 178, 182, 216, 221, 282, 374, 430
CviQI GTAC 5 cut(s) 53, 80, 349, 382, 410
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 73, 151, 155, 439
DpnII GATC 4 cut(s) 71, 149, 153, 437
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 253, 479
FaiI YATR 5 cut(s) 117, 251, 407, 463, 477
FatI CATG 2 cut(s) 249, 475
Fnu4HI GCNGC 2 cut(s) 372, 428
FokI GGATG 3 cut(s) 199, 277, 311
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 372, 428
FspBI CTAG 3 cut(s) 179, 389, 431
GluI GCNGC 2 cut(s) 372, 428
GsaI CCCAGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 216, 374
HapII CCGG 1 cut(s) 279
Hin1II CATG 2 cut(s) 253, 479
HinfI GANTC 2 cut(s) 265, 318
HpaII CCGG 1 cut(s) 279
HphI GGTGA 3 cut(s) 242, 319, 408
Hpy188I TCNGA 2 cut(s) 175, 264
Hpy188III TCNNGA 1 cut(s) 366
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 24, 253, 335, 427
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 253, 479
KpnI GGTACC 1 cut(s) 413
Kzo9I GATC 4 cut(s) 71, 149, 153, 437
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 23, 34, 110, 121, 168, 229, 292, 321
Lsp1109I GCAGC 1 cut(s) 439
MaeI CTAG 3 cut(s) 179, 389, 431
MaeIII GTNAC 2 cut(s) 120, 166
MalI GATC 4 cut(s) 73, 151, 155, 439
MbiI CCGCTC 1 cut(s) 371
MboI GATC 4 cut(s) 71, 149, 153, 437
MboII GAAGA 4 cut(s) 50, 140, 148, 313
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 470
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 2 cut(s) 206, 234
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NdeII GATC 4 cut(s) 71, 149, 153, 437
NheI GCTAGC 1 cut(s) 178
NlaIII CATG 2 cut(s) 253, 479
NlaIV GGNNCC 1 cut(s) 411
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 166
PasI CCCWGGG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 373, 429
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 398
RsaI GTAC 5 cut(s) 54, 81, 350, 383, 411
RsaNI GTAC 5 cut(s) 53, 80, 349, 382, 410
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 372, 428
Sau3AI GATC 4 cut(s) 71, 149, 153, 437
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 223
SetI ASST 9 cut(s) 122, 180, 184, 223, 340, 390, 400, 432, 436
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 398
Sse9I AATT 1 cut(s) 470
SsiI CCGC 1 cut(s) 371
SspMI CTAG 3 cut(s) 179, 389, 431
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 74, 152, 316, 436
TasI AATT 1 cut(s) 470
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 203, 257
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 398
XspI CTAG 3 cut(s) 179, 389, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.