Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014669

Physical Location & Seq

Genomic Coordinates Reverse (-)

6581603 .. 6582444

Gene Structure 842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATAACCAAGTAGAAGAAGAAAACCCCGCATCTTCTCCGGCAACAGGAAGAGGAGGTGGTCGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGCGCTGCTGCCTCTTCATTTCGAAGACAGAGCAAGAGCTGGCCAGTTTCCCGCTTTCATTGGCAAGCACAAACTGGCTGCTTCCATTTCCCATCTCGAAAACCAAATCGACATCATCCAGAAAGAGCTGGACCACCTTGAGACAGTAGGTGAATCCTCCATTGTCTGCAAAGATCTCATTGCTACCGTTGAATCCACTTCTATTACGATCGATCCATTGACTAAAGGACCAGGTGAAGTAGGGTGGGATAGGTGGTTCCGAGGAGCCCATAACTCCAAAAATCAGAGCCGCTGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

133

Amino Acids

13.97

Weight (kDa)

5.68

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30640 FvH4_2g30640 FvH4_2g30640
malus_domestica	MD08G1133500.v1.1 MD15G1110600.v1.1
prunus_persica	Prupe.1G462900_v2.0.a1 Prupe.2G330000_v2.0.a1
pyrus_communis	pycom15g10100
rosa_chinensis	RchiOBHm_Chr6g0312271
rosa_laevigata	RLG00000010337
rosa_multiflora	Rmu_ssc0000424.1_g000004
rosa_rugosa	Rorug06G0394500 Rorug06G0394600
rosa_samantha	Rh6BG522800 Rh6CG528500 Rh6DG514000
rosa_wichuraiana	Rw6G044510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 150, 388
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	328
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	137, 226
AluI	AGCT	2 cut(s)	137, 226
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	3 cut(s)	103, 106, 176
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	229, 326
AsuHPI	GGTGA	2 cut(s)	260, 344
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	229, 326
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	90, 93, 163
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	104
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	4 cut(s)	104, 107, 177, 388
BlsI	GCNGC	4 cut(s)	105, 108, 178, 389
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	229, 326
BmgT120I	GGNCC	2 cut(s)	229, 326
BmiI	GGNNCC	2 cut(s)	356, 364
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	142, 177
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	142, 177
BseXI	GCAGC	3 cut(s)	90, 93, 163
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	271, 306, 310, 393
BspACI	CCGC	3 cut(s)	30, 150, 388
BspANI	GGCC	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	356, 364
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	142, 177
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	4 cut(s)	271, 306, 310, 393
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	244, 286
Bst6I	CTCTTC	2 cut(s)	46, 117
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	139, 164
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	4 cut(s)	274, 309, 313, 396
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	271, 306, 310, 393
BstMCI	CGRYCG	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	90, 93, 163
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	271, 393
BstYI	RGATCY	2 cut(s)	271, 393
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	141
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	139, 164
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	229, 326
ClaI	ATCGAT	1 cut(s)	309
CsiI	ACCWGGT	1 cut(s)	328
CviJI	RGCY	6 cut(s)	137, 141, 176, 226, 365, 387
CviKI_1	RGCY	6 cut(s)	137, 141, 176, 226, 365, 387
DpnI	GATC	4 cut(s)	273, 308, 312, 395
DpnII	GATC	4 cut(s)	271, 306, 310, 393
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	46, 117
EarI	CTCTTC	2 cut(s)	46, 117
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	229, 326
EcoRII	CCWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	367
FaiI	YATR	1 cut(s)	369
FauI	CCCGC	2 cut(s)	37, 157
Fnu4HI	GCNGC	4 cut(s)	104, 107, 177, 388
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	4 cut(s)	104, 107, 177, 388
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	4 cut(s)	104, 107, 177, 388
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	251, 290
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	260, 344
Hpy188I	TCNGA	2 cut(s)	359, 384
Hpy188III	TCNNGA	2 cut(s)	194, 217
HpyCH4III	ACNGT	2 cut(s)	244, 286
HpyCH4V	TGCA	1 cut(s)	267
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	4 cut(s)	271, 306, 310, 393
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	3 cut(s)	90, 93, 163
LweI	GCATC	1 cut(s)	41
MabI	ACCWGGT	1 cut(s)	328
MalI	GATC	4 cut(s)	273, 308, 312, 395
MboI	GATC	4 cut(s)	271, 306, 310, 393
MboII	GAAGA	6 cut(s)	27, 29, 32, 63, 104, 134
MflI	RGATCY	2 cut(s)	271, 393
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	271, 306, 310, 393
NlaIV	GGNNCC	2 cut(s)	356, 364
NspV	TTCGAA	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	251, 290
PkrI	GCNGC	4 cut(s)	105, 108, 178, 389
Ple19I	CGATCG	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	356, 364
PspPI	GGNCC	2 cut(s)	229, 326
PsuI	RGATCY	2 cut(s)	271, 393
PvuI	CGATCG	1 cut(s)	309
SatI	GCNGC	4 cut(s)	104, 107, 177, 388
Sau3AI	GATC	4 cut(s)	271, 306, 310, 393
Sau96I	GGNCC	2 cut(s)	229, 326
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	61, 139, 228, 237, 250, 334, 353
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	2 cut(s)	229, 326
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	3 cut(s)	30, 150, 388
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	244, 286
TaqI	TCGA	4 cut(s)	120, 195, 207, 309
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	251, 290
TseI	GCWGC	3 cut(s)	103, 106, 176
TspDTI	ATGAA	2 cut(s)	104, 145
VpaK11BI	GGWCC	2 cut(s)	229, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.