Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005169

Physical Location & Seq

Genomic Coordinates Reverse (-)

8728322 .. 8734151

Gene Structure 5830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGTGATGGTGGTGAGCGAGCGACCACTGAAAAGGATGAAGAGGCGAATCACGGCGGATCTCAATGACTTCTTCACGTTCCCGTCGGCGTCGCCCAACCGCCGCGTGGGGCCCTTCAGGAGCAGCGTCATGGATTTCATCTCTAAGCACGCGTTGCTGCCTCCGCCCTCTTCCCTCTCCCCTCACCTCATGACGTGGCAGATCCTCTTCAGGGCCGGGGATGACGATCCGTCATCATCCCCAGCCGACGCTGCCGTCGTCTGTCTCGACATCGTGGAGGAGGACGTCGCCAGATCTAGATCCGTCTATTGTGATCACTGCCGAGTCGTTGGATGGAGTGGTCATCCAGTTTGCGGGAAACGTTATCATTTTATTATTAAGGCTGATGGTAATTCCATTGGTGGATATCACAAGCCTTGTATGTGCTGTGGAGATGTTGTGCATATCTACGAATCCAAGTGCAAATCTTGCAATCTTGATGCAAGTACAAAAGATTTTGAAGACTGGGTTTATAACCAGTTAGAGAACACAACTCATCTTCTGCATGGAGTAGTCCATTCAAATGGTTTTGGACACCTTCTTAGGGTCAATGGAAAGGAAGGTGGCTCAAGAGTTCTTTCAGGATGTCATATAATGGACTTTTGGGACCGGCTCTGTAAATTACTAGGAGTCAGAATGGTCAGTGTGATGGATGTGTCAAAGAAGTATGGGTTGGAATATCGATTACTTCATTCAATTATCAAAGGGCATCCTTGGTATGGTGATTGGGGTTATGAATTTGCTGCTGGTAGTTTTGCTCTGACTCGTGATGCCTATAAATTGGCTGTTGAAACACTCTCTAGCCTACCGTTGTCCATCTTTCTTTCCCAAGGTCAAAACCATGGTTCTCATGTCCATGACATCATCTCGCGATACCAATCTCTTTCAGAATGCAAGCTTGACAATATAAGAGATCTCTTTGGTTTCCTTATTAGTTTGGTCCACGATGCTCACAAGTATTCCTCAAGGGTTGATGATGCCACGTGCAAGAAGCAAGGCACCACCTCCGCCTCACGAGTTTTGTGTACATGGACTAAGAGTGATATTGAATATGTTGAAGAGGCCATGTTCAAAGTATTGCGTGCTGTTTCTGGTTCTAATTGGGTAAGTGCACGTAATCTTAAACGTGCTGTGTTTAAGGTGGCTGCGCCAGAACTCCTTGATTATTGCCTTAGGGAACTTGGAGGGAAAATGGTGGGGGATGGGATGCATGTTTGTTCCAGATACAATCCTGATACAGAGGCTTTTGAGTACAGACTCGTGGCTGGGAGTGTCTCATCAAAGGGAAGCACTGCTTGCTCTAGTTCTTCTCTCTCTAGCAGCATATCAGAAGAAACTCTCGTGCTGGACTTGCGCTTCTTATATGAGTACATGCTCCAACCCCAAACTATGATGAAGGACGTGCCTCAGGTAACAAGGGATCTTGCAATCAGCTCAGCTGAGAAGCTACTTGACTGCAAGCAGTTTGTGAAAGACTACAAGCCTGAAAAGATGTCAACTAATGACCCATCTGTGACATGTGTCTTGTGTAGTGTGGAATTTACAGATGAATCTGAAGAATGTTCCTTCATTAATCCTCCTCCCGAACTGATTGTCCTGTCAAATGCTACCGTATCTGATCTCAAGCTAGCAGCATCAAAAGCTTTCCAAGATGTGTATTTGATATTAAAAAGGTTTCAAGCTGAAGAGTTGCTTGACTGCGGCAATGTTGATGAATCCACCCAGGTCAAGCACTTGTTAGGATCAGCCGAACTTGTTCGGGTGAGAGGGAGGTGCAACGCAAAGAGTGTATGGAGTAAGTTTAGGATGGAAAGGGGGACTGAGAGATGGACAGTAGATTGCACGTGTGGGGCCAAGGATGATGACGGAGAAAGAATGTTGGCTTGTGATGGTTGTGGCGTGTGGCGGCACACTAGATGTACTGGAATCCCCGACTCTGATTCAGTTCCTGCAAAATTTCTTTGCGAGAGATGCAAAAGCTCCGCCTCTGTAGAGAAATCCGGGGGCCCCTGCAAAGACGAGGTTGTTGCCAATGTAGACGGAGATAGCCGCTGCACTGGGAGTAGTTTGACCGTCCCACCCGATGTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

711

Amino Acids

78.92

Weight (kDa)

6.52

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980
malus_domestica	MD15G1141000.v1.1
prunus_persica	Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1
pyrus_communis	pycom15g12740
rosa_chinensis	RchiOBHm_Chr3g0485271
rosa_laevigata	RLG00000023161
rosa_multiflora	Rmu_sc0001136.1_g000035 Rmu_sc0010132.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397140
rosa_rugosa	Rorug03G0217200 Rorug03G0217300 Rorug03G0217400
rosa_samantha	Rh3AG266600 Rh3BG302300 Rh3CG300300 Rh3DG296500
rosa_wichuraiana	Rw3G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	2076
AccII	CGCG	3 cut(s)	105, 152, 910
AclI	AACGTT	1 cut(s)	361
AclWI	GGATC	6 cut(s)	66, 196, 221, 294, 1467, 1789
AcsI	RAATTY	3 cut(s)	776, 1577, 1994
AcuI	CTGAAG	4 cut(s)	100, 193, 1614, 1743
AcvI	CACGTG	2 cut(s)	1023, 1884
AcyI	GRCGYC	2 cut(s)	89, 285
AfaI	GTAC	5 cut(s)	487, 1066, 1292, 1409, 1960
AfiI	CCNNNNNNNGG	5 cut(s)	106, 211, 353, 583, 758
AflIII	ACRYGT	3 cut(s)	150, 1556, 1883
AgsI	TTSAA	8 cut(s)	500, 561, 735, 830, 1088, 1097, 1111, 1718
AhdI	GACNNNNNGTC	1 cut(s)	229
AjiI	CACGTC	2 cut(s)	195, 1441
AjnI	CCWGG	1 cut(s)	1761
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AloI	GAACNNNNNNTCC	2 cut(s)	1617, 1649
AluBI	AGCT	8 cut(s)	937, 1473, 1478, 1486, 1666, 1682, 1721, 2019
AluI	AGCT	8 cut(s)	937, 1473, 1478, 1486, 1666, 1682, 1721, 2019
Alw21I	GWGCWC	1 cut(s)	1153
Alw26I	GTCTC	2 cut(s)	269, 1318
Alw44I	GTGCAC	1 cut(s)	1149
AlwI	GGATC	6 cut(s)	66, 196, 221, 294, 1467, 1789
AlwNI	CAGNNNCTG	1 cut(s)	1988
AoxI	GGCC	5 cut(s)	110, 213, 1101, 1890, 2044
ApaI	GGGCCC	2 cut(s)	114, 2048
ApaLI	GTGCAC	1 cut(s)	1149
ApeKI	GCWGC	8 cut(s)	123, 157, 251, 782, 1184, 1359, 1670, 2091
ApoI	RAATTY	3 cut(s)	776, 1577, 1994
ArsI	GACNNNNNNTTYG	2 cut(s)	1617, 1649
AseI	ATTAAT	1 cut(s)	1611
Asp700I	GAANNNNTTC	1 cut(s)	1794
AspLEI	GCGC	2 cut(s)	1189, 1395
AspS9I	GGNCC	8 cut(s)	110, 111, 213, 646, 979, 1890, 2044, 2045
AsuC2I	CCSGG	2 cut(s)	217, 2041
AsuHPI	GGTGA	5 cut(s)	16, 25, 176, 773, 1813
AsuNHI	GCTAGC	1 cut(s)	1666
AvaII	GGWCC	2 cut(s)	646, 979
AxyI	CCTNAGG	2 cut(s)	1211, 1446
BaeGI	GKGCMC	3 cut(s)	114, 1153, 2048
BanI	GGYRCC	1 cut(s)	1037
BanII	GRGCYC	2 cut(s)	114, 2048
BauI	CACGAG	4 cut(s)	804, 1053, 1298, 1379
BbrPI	CACGTG	2 cut(s)	1023, 1884
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	1153
BbvI	GCAGC	8 cut(s)	135, 144, 238, 769, 1171, 1371, 1682, 2078
BccI	CCATC	9 cut(s)	327, 380, 682, 863, 1235, 1555, 1840, 1860, 1922
BceAI	ACGGC	2 cut(s)	69, 239
BcgI	CGANNNNNNTGC	2 cut(s)	2048, 2082
BciT130I	CCWGG	1 cut(s)	1763
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	217, 2041
BcoDI	GTCTC	2 cut(s)	269, 1318
BfaI	CTAG	7 cut(s)	297, 665, 840, 1341, 1356, 1667, 1953
BfmI	CTRYAG	1 cut(s)	2028
BglII	AGATCT	2 cut(s)	293, 952
BlpI	GCTNAGC	1 cut(s)	1474
Bme1390I	CCNGG	3 cut(s)	217, 1763, 2041
Bme18I	GGWCC	2 cut(s)	646, 979
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgBI	CACGTC	2 cut(s)	195, 1441
BmgT120I	GGNCC	8 cut(s)	110, 111, 213, 646, 979, 1890, 2044, 2045
BmiI	GGNNCC	8 cut(s)	111, 112, 647, 1039, 1891, 2045, 2046, 2047
BmrFI	CCNGG	3 cut(s)	217, 1763, 2041
BmrI	ACTGGG	2 cut(s)	514, 2106
BmsI	GCATC	8 cut(s)	469, 757, 799, 976, 1006, 1236, 1682, 2000
BmtI	GCTAGC	1 cut(s)	1670
BmuI	ACTGGG	2 cut(s)	514, 2106
BoxI	GACNNNNGTC	1 cut(s)	1559
BpiI	GAAGAC	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	1474
BpuEI	CTTGAG	3 cut(s)	592, 988, 1646
BpuMI	CCSGG	2 cut(s)	217, 2041
Bsa29I	ATCGAT	1 cut(s)	721
BsaAI	YACGTR	3 cut(s)	1023, 1154, 1884
BsaBI	GATNNNNATC	3 cut(s)	225, 298, 916
BsaHI	GRCGYC	2 cut(s)	89, 285
BsaJI	CCNNGG	7 cut(s)	216, 752, 868, 880, 1761, 1893, 2040
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 211, 353, 583, 758
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	5 cut(s)	347, 509, 517, 1966, 2101
Bse21I	CCTNAGG	2 cut(s)	1211, 1446
Bse3DI	GCAATG	1 cut(s)	1750
Bse8I	GATNNNNATC	3 cut(s)	225, 298, 916
BseBI	CCWGG	1 cut(s)	1763
BseCI	ATCGAT	1 cut(s)	721
BseDI	CCNNGG	7 cut(s)	216, 752, 868, 880, 1761, 1893, 2040
BseJI	GATNNNNATC	3 cut(s)	225, 298, 916
BseLI	CCNNNNNNNGG	5 cut(s)	106, 211, 353, 583, 758
BseMI	GCAATG	1 cut(s)	1750
BseMII	CTCAG	4 cut(s)	1460, 1470, 1488, 1851
BseNI	ACTGG	5 cut(s)	347, 509, 517, 1966, 2101
BseRI	GAGGAG	2 cut(s)	293, 1608
BseSI	GKGCMC	3 cut(s)	114, 1153, 2048
BseXI	GCAGC	8 cut(s)	135, 144, 238, 769, 1171, 1371, 1682, 2078
BseYI	CCCAGC	2 cut(s)	241, 1304
BsgI	GTGCAG	1 cut(s)	2077
Bsh1236I	CGCG	3 cut(s)	105, 152, 910
BshFI	GGCC	5 cut(s)	112, 215, 1103, 1892, 2046
BshNI	GGYRCC	1 cut(s)	1037
BshVI	ATCGAT	1 cut(s)	721
BsiHKAI	GWGCWC	1 cut(s)	1153
BsiSI	CCGG	3 cut(s)	216, 649, 2040
BslFI	GGGAC	3 cut(s)	659, 1870, 2099
BslI	CCNNNNNNNGG	5 cut(s)	106, 211, 353, 583, 758
BsmAI	GTCTC	2 cut(s)	269, 1318
BsmFI	GGGAC	3 cut(s)	659, 1870, 2099
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	5 cut(s)	112, 215, 1103, 1892, 2046
Bsp120I	GGGCCC	2 cut(s)	110, 2044
Bsp1286I	GDGCHC	3 cut(s)	114, 1153, 2048
Bsp1407I	TGTACA	1 cut(s)	1064
Bsp1720I	GCTNAGC	1 cut(s)	1474
Bsp19I	CCATGG	1 cut(s)	880
Bsp68I	TCGCGA	1 cut(s)	910
BspANI	GGCC	5 cut(s)	112, 215, 1103, 1892, 2046
BspCNI	CTCAG	4 cut(s)	1459, 1471, 1487, 1852
BspDI	ATCGAT	1 cut(s)	721
BspFNI	CGCG	3 cut(s)	105, 152, 910
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	8 cut(s)	111, 112, 647, 1039, 1891, 2045, 2046, 2047
BspOI	GCTAGC	1 cut(s)	1670
BspPI	GGATC	6 cut(s)	66, 196, 221, 294, 1467, 1789
BspT107I	GGYRCC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	1750
BsrFI	RCCGGY	1 cut(s)	648
BsrGI	TGTACA	1 cut(s)	1064
BsrI	ACTGG	5 cut(s)	347, 509, 517, 1966, 2101
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	7 cut(s)	216, 752, 868, 880, 1761, 1893, 2040
BssNI	GRCGYC	2 cut(s)	89, 285
BssSI	CACGAG	4 cut(s)	804, 1053, 1298, 1379
BssT1I	CCWWGG	4 cut(s)	752, 868, 880, 1893
Bst2BI	CACGAG	4 cut(s)	804, 1053, 1298, 1379
Bst2UI	CCWGG	1 cut(s)	1763
Bst4CI	ACNGT	4 cut(s)	849, 1651, 1873, 2113
Bst6I	CTCTTC	5 cut(s)	35, 175, 212, 1092, 1719
BstACI	GRCGYC	2 cut(s)	89, 285
BstAPI	GCANNNNNTGC	3 cut(s)	154, 468, 1335
BstAUI	TGTACA	1 cut(s)	1064
BstBAI	YACGTR	3 cut(s)	1023, 1154, 1884
BstC8I	GCNNGC	7 cut(s)	20, 150, 935, 1122, 1336, 1499, 1668
BstDEI	CTNAG	8 cut(s)	144, 581, 1074, 1211, 1446, 1474, 1479, 1860
BstDSI	CCRYGG	1 cut(s)	880
BstFNI	CGCG	3 cut(s)	105, 152, 910
BstHHI	GCGC	2 cut(s)	1189, 1395
BstMAI	GTCTC	2 cut(s)	269, 1318
BstMWI	GCNNNNNNNGC	8 cut(s)	154, 163, 251, 468, 1335, 1390, 1679, 2010
BstNI	CCWGG	1 cut(s)	1763
BstNSI	RCATGY	3 cut(s)	1253, 1414, 1560
BstPAI	GACNNNNGTC	1 cut(s)	1559
BstSCI	CCNGG	3 cut(s)	215, 1761, 2039
BstSFI	CTRYAG	1 cut(s)	2028
BstSLI	GKGCMC	3 cut(s)	114, 1153, 2048
BstUI	CGCG	3 cut(s)	105, 152, 910
BstV1I	GCAGC	8 cut(s)	135, 144, 238, 769, 1171, 1371, 1682, 2078
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	6 cut(s)	58, 201, 293, 299, 952, 1459
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	6 cut(s)	58, 201, 293, 299, 952, 1459
Bsu15I	ATCGAT	1 cut(s)	721
Bsu36I	CCTNAGG	2 cut(s)	1211, 1446
BsuRI	GGCC	5 cut(s)	112, 215, 1103, 1892, 2046
BsuTUI	ATCGAT	1 cut(s)	721
BtgI	CCRYGG	1 cut(s)	880
BtrI	CACGTC	2 cut(s)	195, 1441
BtsI	GCAGTG	2 cut(s)	316, 1329
BtsIMutI	CAGTG	5 cut(s)	26, 316, 688, 1329, 2094
BtuMI	TCGCGA	1 cut(s)	910
Cac8I	GCNNGC	7 cut(s)	20, 150, 935, 1122, 1336, 1499, 1668
CaiI	CAGNNNCTG	1 cut(s)	1988
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	1189, 1395
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	8 cut(s)	110, 111, 213, 646, 979, 1890, 2044, 2045
ClaI	ATCGAT	1 cut(s)	721
CseI	GACGC	3 cut(s)	78, 115, 257
Csp6I	GTAC	5 cut(s)	486, 1065, 1291, 1408, 1959
CviQI	GTAC	5 cut(s)	486, 1065, 1291, 1408, 1959
DdeI	CTNAG	8 cut(s)	144, 581, 1074, 1211, 1446, 1474, 1479, 1860
DrdI	GACNNNNNNGTC	1 cut(s)	254
DriI	GACNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	5 cut(s)	35, 175, 212, 1092, 1719
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	5 cut(s)	35, 175, 212, 1092, 1719
EciI	GGCGGA	4 cut(s)	71, 153, 1036, 2011
Eco130I	CCWWGG	4 cut(s)	752, 868, 880, 1893
Eco24I	GRGCYC	2 cut(s)	114, 2048
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	646, 979
Eco57I	CTGAAG	4 cut(s)	100, 193, 1614, 1743
Eco72I	CACGTG	2 cut(s)	1023, 1884
Eco81I	CCTNAGG	2 cut(s)	1211, 1446
EcoO109I	RGGNCCY	4 cut(s)	110, 111, 2044, 2045
EcoRII	CCWGG	1 cut(s)	1761
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	4 cut(s)	752, 868, 880, 1893
EcoT22I	ATGCAT	1 cut(s)	1251
EcoT38I	GRGCYC	2 cut(s)	114, 2048
ErhI	CCWWGG	4 cut(s)	752, 868, 880, 1893
FalI	AAGNNNNNCTT	4 cut(s)	1318, 1350, 1716, 1748
FaqI	GGGAC	3 cut(s)	659, 1870, 2099
FauI	CCCGC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	2076
FriOI	GRGCYC	2 cut(s)	114, 2048
FspBI	CTAG	7 cut(s)	297, 665, 840, 1341, 1356, 1667, 1953
GlaI	GCGC	2 cut(s)	1188, 1394
GsaI	CCCAGC	2 cut(s)	245, 1308
HaeIII	GGCC	5 cut(s)	112, 215, 1103, 1892, 2046
HapII	CCGG	3 cut(s)	216, 649, 2040
HgaI	GACGC	3 cut(s)	78, 115, 257
HhaI	GCGC	2 cut(s)	1189, 1395
Hin1I	GRCGYC	2 cut(s)	89, 285
Hin6I	GCGC	2 cut(s)	1187, 1393
HinP1I	GCGC	2 cut(s)	1187, 1393
HincII	GTYRAC	1 cut(s)	1536
HindII	GTYRAC	1 cut(s)	1536
HindIII	AAGCTT	2 cut(s)	935, 1680
HpaII	CCGG	3 cut(s)	216, 649, 2040
HphI	GGTGA	5 cut(s)	16, 25, 176, 773, 1813
Hpy166II	GTNNAC	5 cut(s)	982, 1065, 1151, 1536, 2077
Hpy188I	TCNGA	7 cut(s)	674, 801, 928, 1369, 1594, 1657, 1978
Hpy8I	GTNNAC	5 cut(s)	982, 1065, 1151, 1536, 2077
Hpy99I	CGWCG	5 cut(s)	88, 94, 251, 260, 290
HpyAV	CCTTC	5 cut(s)	124, 587, 593, 1429, 1615
HpyCH4III	ACNGT	4 cut(s)	849, 1651, 1873, 2113
HpyCH4IV	ACGT	9 cut(s)	77, 194, 285, 361, 1022, 1153, 1165, 1440, 1883
HpyF10VI	GCNNNNNNNGC	8 cut(s)	154, 163, 251, 468, 1335, 1390, 1679, 2010
HpyF3I	CTNAG	8 cut(s)	144, 581, 1074, 1211, 1446, 1474, 1479, 1860
HpySE526I	ACGT	9 cut(s)	77, 194, 285, 361, 1022, 1153, 1165, 1440, 1883
Hsp92I	GRCGYC	2 cut(s)	89, 285
HspAI	GCGC	2 cut(s)	1187, 1393
Ksp22I	TGATCA	1 cut(s)	313
LmnI	GCTCC	3 cut(s)	120, 1419, 2024
Lsp1109I	GCAGC	8 cut(s)	135, 144, 238, 769, 1171, 1371, 1682, 2078
LweI	GCATC	8 cut(s)	469, 757, 799, 976, 1006, 1236, 1682, 2000
MaeI	CTAG	7 cut(s)	297, 665, 840, 1341, 1356, 1667, 1953
MaeII	ACGT	9 cut(s)	77, 194, 285, 361, 1022, 1153, 1165, 1440, 1883
MaeIII	GTNAC	2 cut(s)	1450, 1552
MflI	RGATCY	6 cut(s)	58, 201, 293, 299, 952, 1459
MhlI	GDGCHC	3 cut(s)	114, 1153, 2048
MluCI	AATT	8 cut(s)	391, 659, 735, 776, 818, 1138, 1577, 1994
MluI	ACGCGT	1 cut(s)	150
MlyI	GAGTC	5 cut(s)	333, 678, 796, 1290, 1967
MmeI	TCCRAC	3 cut(s)	310, 693, 1441
Mph1103I	ATGCAT	1 cut(s)	1251
MroXI	GAANNNNTTC	1 cut(s)	1794
MseI	TTAA	5 cut(s)	378, 1161, 1176, 1611, 1706
MslI	CAYNNNNRTG	2 cut(s)	561, 894
MspA1I	CMGCKG	2 cut(s)	1478, 2091
MspI	CCGG	3 cut(s)	216, 649, 2040
MspR9I	CCNGG	3 cut(s)	217, 1763, 2041
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	1763
MvnI	CGCG	3 cut(s)	105, 152, 910
MwoI	GCNNNNNNNGC	8 cut(s)	154, 163, 251, 468, 1335, 1390, 1679, 2010
NciI	CCSGG	2 cut(s)	217, 2041
NcoI	CCATGG	1 cut(s)	880
NheI	GCTAGC	1 cut(s)	1666
NlaIV	GGNNCC	8 cut(s)	111, 112, 647, 1039, 1891, 2045, 2046, 2047
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	1552
NruI	TCGCGA	1 cut(s)	910
NsiI	ATGCAT	1 cut(s)	1251
NspI	RCATGY	3 cut(s)	1253, 1414, 1560
PagI	TCATGA	1 cut(s)	189
PciI	ACATGT	1 cut(s)	1556
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 264
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	1794
PfeI	GAWTC	6 cut(s)	48, 452, 1589, 1754, 1965, 1979
PleI	GAGTC	5 cut(s)	332, 677, 796, 1290, 1967
PmaCI	CACGTG	2 cut(s)	1023, 1884
PmlI	CACGTG	2 cut(s)	1023, 1884
PpsI	GAGTC	5 cut(s)	332, 677, 796, 1290, 1967
Ppu21I	YACGTR	3 cut(s)	1023, 1154, 1884
PscI	ACATGT	1 cut(s)	1556
PshAI	GACNNNNGTC	1 cut(s)	1559
PshBI	ATTAAT	1 cut(s)	1611
PsiI	TTATAA	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	1761
PspCI	CACGTG	2 cut(s)	1023, 1884
PspFI	CCCAGC	2 cut(s)	241, 1304
PspGI	CCWGG	1 cut(s)	1761
PspN4I	GGNNCC	8 cut(s)	111, 112, 647, 1039, 1891, 2045, 2046, 2047
PspOMI	GGGCCC	2 cut(s)	110, 2044
PspPI	GGNCC	8 cut(s)	110, 111, 213, 646, 979, 1890, 2044, 2045
PstNI	CAGNNNCTG	1 cut(s)	1988
PsuI	RGATCY	6 cut(s)	58, 201, 293, 299, 952, 1459
PvuII	CAGCTG	1 cut(s)	1478
RruI	TCGCGA	1 cut(s)	910
RsaI	GTAC	5 cut(s)	487, 1066, 1292, 1409, 1960
RsaNI	GTAC	5 cut(s)	486, 1065, 1291, 1408, 1959
RseI	CAYNNNNRTG	2 cut(s)	561, 894
SaqAI	TTAA	5 cut(s)	378, 1161, 1176, 1611, 1706
Sau96I	GGNCC	8 cut(s)	110, 111, 213, 646, 979, 1890, 2044, 2045
SchI	GAGTC	5 cut(s)	333, 678, 796, 1290, 1967
ScrFI	CCNGG	3 cut(s)	217, 1763, 2041
SduI	GDGCHC	3 cut(s)	114, 1153, 2048
SfaNI	GCATC	8 cut(s)	469, 757, 799, 976, 1006, 1236, 1682, 2000
SfcI	CTRYAG	1 cut(s)	2028
SinI	GGWCC	2 cut(s)	646, 979
SmiMI	CAYNNNNRTG	2 cut(s)	561, 894
SmlI	CTYRAG	3 cut(s)	607, 1003, 1661
SmoI	CTYRAG	3 cut(s)	607, 1003, 1661
Sse9I	AATT	8 cut(s)	391, 659, 735, 776, 818, 1138, 1577, 1994
SspMI	CTAG	7 cut(s)	297, 665, 840, 1341, 1356, 1667, 1953
StyD4I	CCNGG	3 cut(s)	215, 1761, 2039
StyI	CCWWGG	4 cut(s)	752, 868, 880, 1893
TaaI	ACNGT	4 cut(s)	849, 1651, 1873, 2113
TaiI	ACGT	9 cut(s)	80, 197, 288, 364, 1025, 1156, 1168, 1443, 1886
TaqI	TCGA	2 cut(s)	267, 721
TasI	AATT	8 cut(s)	391, 659, 735, 776, 818, 1138, 1577, 1994
TatI	WGTACW	5 cut(s)	485, 1064, 1290, 1407, 1958
TauI	GCSGC	4 cut(s)	105, 1743, 1948, 2091
TfiI	GAWTC	6 cut(s)	48, 452, 1589, 1754, 1965, 1979
Tru1I	TTAA	5 cut(s)	378, 1161, 1176, 1611, 1706
Tru9I	TTAA	5 cut(s)	378, 1161, 1176, 1611, 1706
TscAI	CASTG	5 cut(s)	33, 323, 688, 1336, 2101
TseFI	GTSAC	1 cut(s)	1552
TseI	GCWGC	8 cut(s)	123, 157, 251, 782, 1184, 1359, 1670, 2091
Tsp45I	GTSAC	1 cut(s)	1552
TspDTI	ATGAA	8 cut(s)	53, 127, 719, 789, 1448, 1597, 1602, 1767
TspGWI	ACGGA	4 cut(s)	219, 292, 1920, 2094
TspRI	CASTG	5 cut(s)	33, 323, 688, 1336, 2101
VneI	GTGCAC	1 cut(s)	1149
VpaK11BI	GGWCC	2 cut(s)	646, 979
VspI	ATTAAT	1 cut(s)	1611
XapI	RAATTY	3 cut(s)	776, 1577, 1994
XbaI	TCTAGA	1 cut(s)	296
XceI	RCATGY	3 cut(s)	1253, 1414, 1560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	2076
XmnI	GAANNNNTTC	1 cut(s)	1794
XspI	CTAG	7 cut(s)	297, 665, 840, 1341, 1356, 1667, 1953
ZraI	GACGTC	1 cut(s)	286
Zsp2I	ATGCAT	1 cut(s)	1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.