Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005169

Physical Location & Seq

Genomic Coordinates Reverse (-)

18809516 .. 18815863

Gene Structure 6348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGGTGGTGAACGAGCGACCTCAGAAGCGGATGAAGCGGCGGATTACGGCGGATCTCAACGACTTCTTCACCTTCCCTTCGTCCTCGTCGCCGCCGGCCGCCACCGGCCCCTTCAGGACCGCCGTCAGGGATTTTCTTTCTAACCATGCGCTGGTTCCTCCGCCGTCGTCCCTGTTCCCTCACCTCATGACGTGGCAGATCCTCTTCAGGGTCGGCGATGCGGATCAGCTCCCGACCACTGCAGCGACGGACGGTCCGGATTCGTTCCCTCCGCCAGTCGTGTGTCTCGATATCGTCGAGGAGGACGTCGCCAGATCTCGAAACGTCTATTGTGATCAGTGCCGAGTTGTAGGTCATGACAATGAGTCCATGACAACAACTGATATTGCTGTTGTTGCTTTGACAGCTAGCTATTCCATCAGTGGAATCTGCCCTGTTGAGTTAGAAACTTCTGCTTTAAGATGGAGTGGTCATCCAGTTTGCGGGAAACGTTATCATTTTATTATTAAGGCTGATGGTAATTCCATTGGTGGGTATCACAAGCCTTGTATGTGCTGTGGAGATGTTGTGCATATCTACGAATCCAAGTGCAAATCTTGCAACCTTGATGCTAGTACAGATGATGTTGAAGATTGGGTGTACAACCAATTAGAGAACACAACCCATCTTCTGCATGGAGTGGTCCATTCAAATGGTTTTGGACACCTTCTTAGGGTCAATGGAAGGGGAAGGTGGCTCGAGGATGCTTTCTGGATAATGGTCAGTGTGATGGATGTGTCAAAGAAGTATGGGCTGGAATATCGGCTACTTCATGCAATTATCAAAGGACATCCCTGGTATGGTGACTGGGGTTATGAATTTGCTACTGGTAGTTTTGCTCTCACTCTTGATGCCTACAATTTGGCTGTTGAAAAACTCTCTACCCTACCCCTGTCCATCTTTCTTGCTCAACGTCGATTTCCATCTTGCATCCGTGACATCATCTTGCGATACCAGTCCCTATCAGAACGTGAGCTTTTGAATATAAGAGATCTCTTTGGTTTCTTGATTAAATTGCTCCATGATGCTCCCAAGTGTTCTTCAAGGGTTGATGATGCCATGAGCAAGAAGCGACGTGCTTCCGGAGTTTTGTATTCATGGACCAAGAGTGATGTTGAATGTGTAGAAGAGGCCATGGTCAAGGTGCTGCGTGCAGTTACTGGGTCAAATTGGATGGGATCTTTGTTAGTTCGAGACGCAATGCTGATGGTGATTTTGAGTACAGTTAGCATGATAGAACATGAGGTTACCCATCCTGCTCAGCCTTCTTTAACTAAGGATGGTAAACTTGATGCATTTATGTTGGCATTAGCTCTGGAAACAAGGGATCTTGCAATCAGCTGTGCTGAAAAGCTACTTGACTGCAAGCAGTTTGTGAAAGACTACAAGCCCGAAAGGATGTCAATTAACGACCCATCTGTTACATGTCTCTTATGTAGAGTTGAATTTACAGACGAGTCTGAAGAATATGCCTCGCTGGATCCCCCTCCAGAATTGATTGTGCTATCCAATGCTACTGTATCTGATCTCAAGCTTGCAGCATCAAAAGCTTTTCAAGATGTGTATTTGACGTTGAAAAGGTTTCAAGCCGAAGAGTTGGTTGACTATGGCGGTGTTGCTGAATCCACCCAGGTCAAGAAGTTGTTAGGGTCAGCAGAATATGTTCGAGTGAGAGGGCGGTGCAATGCAAAGAATGGATGGAGTAAGTTTAGCATGGAGAGGGGGATTGAGAGGTGGACTGTGGAGTGCAGCTGTGGGGCAAAGGATGATGATGGAGAGAGAATGTTGGCTTGTGATGTTTGTGGTGTGTGGCGGCACACTCGATGTTCTGGAATCCCAGACTCTGATTCGGTTCCTACAAATTTTGTTTGTCAAAGATGTAAAAGCTCAGTTTCAGTAACAAAAAATGCTGGGCCTTGCAAGGATGAGGCGGTTGCTAAGGTTGCTGGAGAAAGTTTGACTGCCCCTCCTGGCGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

673

Amino Acids

74.78

Weight (kDa)

6.06

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_At1g33420	PF25565	485 - 574	3.1e-28	At1g33420-like, ubiquitin-like domain
PHD	PF00628	596 - 640	9.2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980
malus_domestica	MD15G1141000.v1.1
prunus_persica	Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1
pyrus_communis	pycom15g12740
rosa_chinensis	RchiOBHm_Chr3g0485271
rosa_laevigata	RLG00000023161
rosa_multiflora	Rmu_sc0001136.1_g000035 Rmu_sc0010132.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397140
rosa_rugosa	Rorug03G0217200 Rorug03G0217300 Rorug03G0217400
rosa_samantha	Rh3AG266600 Rh3BG302300 Rh3CG300300 Rh3DG296500
rosa_wichuraiana	Rw3G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccIII	TCCGGA	2 cut(s)	256, 1121
AclI	AACGTT	1 cut(s)	490
AclWI	GGATC	7 cut(s)	60, 193, 231, 1225, 1374, 1514, 1527
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	857, 1484, 1900
AcuI	CTGAAG	3 cut(s)	97, 190, 1521
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	3 cut(s)	616, 641, 1261
AfiI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 482, 531, 712, 839
AflIII	ACRYGT	1 cut(s)	1463
AhdI	GACNNNNNGTC	2 cut(s)	252, 364
AjiI	CACGTC	2 cut(s)	192, 1115
AjnI	CCWGG	3 cut(s)	833, 1668, 2008
Alw26I	GTCTC	3 cut(s)	290, 1227, 1472
AlwI	GGATC	7 cut(s)	60, 193, 231, 1225, 1374, 1514, 1527
AlwNI	CAGNNNCTG	2 cut(s)	1199, 1883
Ama87I	CYCGRG	1 cut(s)	737
Aor13HI	TCCGGA	2 cut(s)	256, 1121
AoxI	GGCC	4 cut(s)	96, 106, 1170, 1952
ApeKI	GCWGC	4 cut(s)	242, 1186, 1577, 1788
ApoI	RAATTY	3 cut(s)	857, 1484, 1900
Asp700I	GAANNNNTTC	1 cut(s)	1701
AspLEI	GCGC	2 cut(s)	151, 2015
AspS9I	GGNCC	6 cut(s)	107, 117, 254, 682, 1140, 1952
AsuHPI	GGTGA	5 cut(s)	19, 61, 173, 854, 1261
AsuNHI	GCTAGC	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	4 cut(s)	117, 254, 682, 1140
BamHI	GGATCC	1 cut(s)	1519
BbvI	GCAGC	4 cut(s)	254, 1173, 1589, 1800
BceAI	ACGGC	3 cut(s)	63, 107, 148
BciT130I	CCWGG	3 cut(s)	835, 1670, 2010
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	290, 1227, 1472
BfaI	CTAG	2 cut(s)	408, 612
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	2016
BglII	AGATCT	2 cut(s)	314, 1030
BisI	GCNGC	8 cut(s)	38, 92, 99, 243, 1187, 1578, 1789, 1853
BlpI	GCTNAGC	1 cut(s)	1299
BlsI	GCNGC	8 cut(s)	39, 93, 100, 244, 1188, 1579, 1790, 1854
Bme1390I	CCNGG	3 cut(s)	835, 1670, 2010
Bme18I	GGWCC	4 cut(s)	117, 254, 682, 1140
BmeRI	GACNNNNNGTC	2 cut(s)	252, 364
BmeT110I	CYCGRG	1 cut(s)	737
BmgBI	CACGTC	2 cut(s)	192, 1115
BmgT120I	GGNCC	6 cut(s)	107, 117, 254, 682, 1140, 1952
BmiI	GGNNCC	4 cut(s)	109, 156, 1521, 1893
BmrFI	CCNGG	3 cut(s)	835, 1670, 2010
BmrI	ACTGGG	2 cut(s)	856, 1209
BmsI	GCATC	9 cut(s)	208, 598, 733, 880, 978, 1054, 1084, 1321, 1589
BmtI	GCTAGC	1 cut(s)	411
BmuI	ACTGGG	2 cut(s)	856, 1209
BoxI	GACNNNNGTC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	1512, 2007
Bpu10I	CCTNAGC	1 cut(s)	1977
Bpu1102I	GCTNAGC	1 cut(s)	1299
BpuEI	CTTGAG	1 cut(s)	1553
BsaBI	GATNNNNATC	2 cut(s)	222, 961
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	833, 1173, 1668
BsaWI	WCCGGW	2 cut(s)	256, 1121
BsaXI	ACNNNNNCTCC	4 cut(s)	552, 582, 1990, 2020
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 482, 531, 712, 839
Bse118I	RCCGGY	2 cut(s)	94, 104
Bse1I	ACTGG	6 cut(s)	275, 476, 851, 871, 994, 1204
Bse3DI	GCAATG	2 cut(s)	1245, 1729
Bse8I	GATNNNNATC	2 cut(s)	222, 961
BseAI	TCCGGA	2 cut(s)	256, 1121
BseBI	CCWGG	3 cut(s)	835, 1670, 2010
BseDI	CCNNGG	3 cut(s)	833, 1173, 1668
BseJI	GATNNNNATC	2 cut(s)	222, 961
BseLI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 482, 531, 712, 839
BseMI	GCAATG	2 cut(s)	1245, 1729
BseMII	CTCAG	3 cut(s)	35, 1313, 1941
BseNI	ACTGG	6 cut(s)	275, 476, 851, 871, 994, 1204
BseRI	GAGGAG	1 cut(s)	314
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	254, 1173, 1589, 1800
BseYI	CCCAGC	1 cut(s)	1949
BsgI	GTGCAG	2 cut(s)	1212, 1807
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	98, 108, 1172, 1954
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	4 cut(s)	95, 105, 257, 1122
BslFI	GGGAC	2 cut(s)	154, 982
BslI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 482, 531, 712, 839
BsmAI	GTCTC	3 cut(s)	290, 1227, 1472
BsmBI	CGTCTC	1 cut(s)	1227
BsmFI	GGGAC	2 cut(s)	154, 982
BsnI	GGCC	4 cut(s)	98, 108, 1172, 1954
BsoBI	CYCGRG	1 cut(s)	737
Bsp13I	TCCGGA	2 cut(s)	256, 1121
Bsp1407I	TGTACA	1 cut(s)	639
Bsp1720I	GCTNAGC	1 cut(s)	1299
Bsp19I	CCATGG	1 cut(s)	1173
BspANI	GGCC	4 cut(s)	98, 108, 1172, 1954
BspCNI	CTCAG	3 cut(s)	34, 1312, 1940
BspEI	TCCGGA	2 cut(s)	256, 1121
BspHI	TCATGA	2 cut(s)	186, 355
BspLI	GGNNCC	4 cut(s)	109, 156, 1521, 1893
BspMAI	CTGCAG	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	7 cut(s)	60, 193, 231, 1225, 1374, 1514, 1527
BsrDI	GCAATG	2 cut(s)	1245, 1729
BsrFI	RCCGGY	2 cut(s)	94, 104
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	6 cut(s)	275, 476, 851, 871, 994, 1204
BssAI	RCCGGY	2 cut(s)	94, 104
BssECI	CCNNGG	3 cut(s)	833, 1173, 1668
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	1173
Bst2UI	CCWGG	3 cut(s)	835, 1670, 2010
Bst4CI	ACNGT	4 cut(s)	254, 1264, 1558, 1780
Bst6I	CTCTTC	3 cut(s)	209, 1161, 1626
BstACI	GRCGYC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	6 cut(s)	96, 409, 1191, 1406, 1575, 2017
BstDEI	CTNAG	6 cut(s)	21, 710, 1299, 1314, 1927, 1977
BstDSI	CCRYGG	1 cut(s)	1173
BstEII	GGTNACC	1 cut(s)	1285
BstH2I	RGCGCY	1 cut(s)	2016
BstHHI	GCGC	2 cut(s)	151, 2015
BstMAI	GTCTC	3 cut(s)	290, 1227, 1472
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 395, 404, 597, 1586, 1982
BstNI	CCWGG	3 cut(s)	835, 1670, 2010
BstNSI	RCATGY	1 cut(s)	1467
BstPAI	GACNNNNGTC	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	1285
BstSCI	CCNGG	3 cut(s)	833, 1668, 2008
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	4 cut(s)	254, 1173, 1589, 1800
BstX2I	RGATCY	7 cut(s)	52, 198, 314, 1030, 1217, 1366, 1519
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	7 cut(s)	52, 198, 314, 1030, 1217, 1366, 1519
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	98, 108, 1172, 1954
BtgI	CCRYGG	1 cut(s)	1173
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	2 cut(s)	192, 1115
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 344, 427, 769
Cac8I	GCNNGC	6 cut(s)	96, 409, 1191, 1406, 1575, 2017
CaiI	CAGNNNCTG	2 cut(s)	1199, 1883
CciI	TCATGA	2 cut(s)	186, 355
CfoI	GCGC	2 cut(s)	151, 2015
Cfr10I	RCCGGY	2 cut(s)	94, 104
Cfr13I	GGNCC	6 cut(s)	107, 117, 254, 682, 1140, 1952
CpoI	CGGWCCG	1 cut(s)	254
CseI	GACGC	1 cut(s)	1244
Csp6I	GTAC	3 cut(s)	615, 640, 1260
CspI	CGGWCCG	1 cut(s)	254
CviQI	GTAC	3 cut(s)	615, 640, 1260
DdeI	CTNAG	6 cut(s)	21, 710, 1299, 1314, 1927, 1977
DriI	GACNNNNNGTC	2 cut(s)	252, 364
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	209, 1161, 1626
Eam1105I	GACNNNNNGTC	2 cut(s)	252, 364
EarI	CTCTTC	3 cut(s)	209, 1161, 1626
EciI	GGCGGA	4 cut(s)	55, 65, 150, 261
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	1173
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	4 cut(s)	117, 254, 682, 1140
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	97, 190, 1521
Eco88I	CYCGRG	1 cut(s)	737
Eco91I	GGTNACC	1 cut(s)	1285
EcoO65I	GGTNACC	1 cut(s)	1285
EcoRII	CCWGG	3 cut(s)	833, 1668, 2008
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	1173
EcoT22I	ATGCAT	1 cut(s)	1336
ErhI	CCWWGG	1 cut(s)	1173
Esp3I	CGTCTC	1 cut(s)	1227
FaqI	GGGAC	2 cut(s)	154, 982
FauI	CCCGC	1 cut(s)	476
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	8 cut(s)	38, 92, 99, 243, 1187, 1578, 1789, 1853
Fsp4HI	GCNGC	8 cut(s)	38, 92, 99, 243, 1187, 1578, 1789, 1853
FspBI	CTAG	2 cut(s)	408, 612
GlaI	GCGC	2 cut(s)	150, 2014
GluI	GCNGC	8 cut(s)	38, 92, 99, 243, 1187, 1578, 1789, 1853
GsaI	CCCAGC	1 cut(s)	1953
GsuI	CTGGAG	2 cut(s)	1512, 2007
HaeII	RGCGCY	1 cut(s)	2016
HaeIII	GGCC	4 cut(s)	98, 108, 1172, 1954
HapII	CCGG	4 cut(s)	95, 105, 257, 1122
HgaI	GACGC	1 cut(s)	1244
HhaI	GCGC	2 cut(s)	151, 2015
Hin1I	GRCGYC	1 cut(s)	306
Hin6I	GCGC	2 cut(s)	149, 2013
HinP1I	GCGC	2 cut(s)	149, 2013
HincII	GTYRAC	1 cut(s)	1642
HindII	GTYRAC	1 cut(s)	1642
HindIII	AAGCTT	2 cut(s)	1571, 1587
HinfI	GANTC	9 cut(s)	260, 365, 426, 581, 1496, 1661, 1872, 1880, 1886
HpaII	CCGG	4 cut(s)	95, 105, 257, 1122
HphI	GGTGA	5 cut(s)	19, 61, 173, 854, 1261
Hpy166II	GTNNAC	5 cut(s)	10, 640, 1325, 1642, 1776
Hpy188I	TCNGA	5 cut(s)	24, 1006, 1501, 1564, 1885
Hpy8I	GTNNAC	5 cut(s)	10, 640, 1325, 1642, 1776
Hpy99I	CGWCG	7 cut(s)	91, 169, 250, 299, 311, 957, 1116
HpyAV	CCTTC	7 cut(s)	82, 87, 121, 716, 717, 723, 1314
HpyCH4III	ACNGT	4 cut(s)	254, 1264, 1558, 1780
HpyCH4IV	ACGT	8 cut(s)	191, 306, 324, 490, 952, 1009, 1114, 1610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 395, 404, 597, 1586, 1982
HpyF3I	CTNAG	6 cut(s)	21, 710, 1299, 1314, 1927, 1977
HpySE526I	ACGT	8 cut(s)	191, 306, 324, 490, 952, 1009, 1114, 1610
Hsp92I	GRCGYC	1 cut(s)	306
HspAI	GCGC	2 cut(s)	149, 2013
Kpn2I	TCCGGA	2 cut(s)	256, 1121
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	334
LmnI	GCTCC	3 cut(s)	234, 1062, 1072
Lsp1109I	GCAGC	4 cut(s)	254, 1173, 1589, 1800
LweI	GCATC	9 cut(s)	208, 598, 733, 880, 978, 1054, 1084, 1321, 1589
MaeI	CTAG	2 cut(s)	408, 612
MaeII	ACGT	8 cut(s)	191, 306, 324, 490, 952, 1009, 1114, 1610
MaeIII	GTNAC	6 cut(s)	842, 974, 1195, 1285, 1459, 1936
MboII	GAAGA	8 cut(s)	58, 196, 641, 659, 1071, 1178, 1514, 1643
MflI	RGATCY	7 cut(s)	52, 198, 314, 1030, 1217, 1366, 1519
MlyI	GAGTC	3 cut(s)	374, 1505, 1874
Mph1103I	ATGCAT	1 cut(s)	1336
MroI	TCCGGA	2 cut(s)	256, 1121
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	1701
MseI	TTAA	5 cut(s)	458, 507, 1050, 1310, 1446
MslI	CAYNNNNRTG	2 cut(s)	360, 690
MspA1I	CMGCKG	2 cut(s)	1380, 1791
MspI	CCGG	4 cut(s)	95, 105, 257, 1122
MspR9I	CCNGG	3 cut(s)	835, 1670, 2010
MvaI	CCWGG	3 cut(s)	835, 1670, 2010
MwoI	GCNNNNNNNGC	6 cut(s)	34, 395, 404, 597, 1586, 1982
NaeI	GCCGGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	1173
NgoMIV	GCCGGC	1 cut(s)	94
NheI	GCTAGC	1 cut(s)	407
NlaIV	GGNNCC	4 cut(s)	109, 156, 1521, 1893
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	842, 974
NsiI	ATGCAT	1 cut(s)	1336
NspI	RCATGY	1 cut(s)	1467
PaeR7I	CTCGAG	1 cut(s)	737
PagI	TCATGA	2 cut(s)	186, 355
PciI	ACATGT	1 cut(s)	1463
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 294, 303
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	1701
PfeI	GAWTC	6 cut(s)	260, 426, 581, 1661, 1872, 1886
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	8 cut(s)	39, 93, 100, 244, 1188, 1579, 1790, 1854
PleI	GAGTC	3 cut(s)	373, 1504, 1874
PpsI	GAGTC	3 cut(s)	373, 1504, 1874
PscI	ACATGT	1 cut(s)	1463
PshAI	GACNNNNGTC	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	833, 1668, 2008
PspEI	GGTNACC	1 cut(s)	1285
PspFI	CCCAGC	1 cut(s)	1949
PspGI	CCWGG	3 cut(s)	833, 1668, 2008
PspN4I	GGNNCC	4 cut(s)	109, 156, 1521, 1893
PspPI	GGNCC	6 cut(s)	107, 117, 254, 682, 1140, 1952
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	1199, 1883
PsuI	RGATCY	7 cut(s)	52, 198, 314, 1030, 1217, 1366, 1519
PvuII	CAGCTG	2 cut(s)	1380, 1791
RsaI	GTAC	3 cut(s)	616, 641, 1261
RsaNI	GTAC	3 cut(s)	615, 640, 1260
RseI	CAYNNNNRTG	2 cut(s)	360, 690
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SaqAI	TTAA	5 cut(s)	458, 507, 1050, 1310, 1446
SatI	GCNGC	8 cut(s)	38, 92, 99, 243, 1187, 1578, 1789, 1853
Sau96I	GGNCC	6 cut(s)	107, 117, 254, 682, 1140, 1952
SchI	GAGTC	3 cut(s)	374, 1505, 1874
ScrFI	CCNGG	3 cut(s)	835, 1670, 2010
SfaNI	GCATC	9 cut(s)	208, 598, 733, 880, 978, 1054, 1084, 1321, 1589
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	737
SinI	GGWCC	4 cut(s)	117, 254, 682, 1140
SlaI	CTCGAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	360, 690
SmlI	CTYRAG	2 cut(s)	737, 1568
SmoI	CTYRAG	2 cut(s)	737, 1568
SspMI	CTAG	2 cut(s)	408, 612
StyD4I	CCNGG	3 cut(s)	833, 1668, 2008
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	4 cut(s)	254, 1264, 1558, 1780
TaiI	ACGT	8 cut(s)	194, 309, 327, 493, 955, 1012, 1117, 1613
TaqI	TCGA	8 cut(s)	288, 297, 319, 738, 955, 1231, 1705, 1861
TatI	WGTACW	3 cut(s)	614, 639, 1259
TauI	GCSGC	4 cut(s)	40, 94, 101, 1855
TfiI	GAWTC	6 cut(s)	260, 426, 581, 1661, 1872, 1886
Tru1I	TTAA	5 cut(s)	458, 507, 1050, 1310, 1446
Tru9I	TTAA	5 cut(s)	458, 507, 1050, 1310, 1446
TscAI	CASTG	4 cut(s)	244, 344, 427, 769
TseFI	GTSAC	2 cut(s)	842, 974
TseI	GCWGC	4 cut(s)	242, 1186, 1577, 1788
Tsp45I	GTSAC	2 cut(s)	842, 974
TspDTI	ATGAA	4 cut(s)	47, 800, 870, 1125
TspGWI	ACGGA	2 cut(s)	263, 962
TspRI	CASTG	4 cut(s)	244, 344, 427, 769
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	4 cut(s)	117, 254, 682, 1140
XapI	RAATTY	3 cut(s)	857, 1484, 1900
XceI	RCATGY	1 cut(s)	1467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	1701
XspI	CTAG	2 cut(s)	408, 612
ZraI	GACGTC	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.