Rorug03G0217400

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005169
Physical Location & Seq
Forward (+)
19811697 .. 19815964
4268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0217400.1

Sequence Viewer

Length: 960 bp
ATGGCGACAGTCCGCATGATAGATATAGCCGTTAACTTCACAGATGGAATGTTCAAAGGACTCTACAATGGGAAGCAGTGCCACGTCTCCGATATACCCACCGTTTTGACCCGGGCTTGGGCTGCCGGCGTCCACCGCATCATCGTCACTGGTGGATCACTTGAGGAATCAAAGGAAGCTTTAACAATTGCACAAACTGATGCAAGGCTTTTTTGTACTGTGGGTGTGCACCCAACTAGATGCAAGGAATTTGATGAGAGCGGGGATCCAGATAAGCATTTTCAGGCGCTTTTGTCATTGGCCAGAGAGGGGATAGAGAAAGGGAAGGTGGTTGCAATTGGTGAGTGTGGACTGGACTATGACAGGCTTCAGTTTTGTCCTCCGGAAATTCAAAAGAAGTATTTTGAGAAGCAGTTTGAATTGGCACATGCCACTAAGCTGCCCATGTTTCTGCATATGCGTGCAGCTGCTCAAGATTTCTGTGAAATTGTAGAAAGAAATAGGAACAGATTCACTGCTGGGGTGGCCCATTCATTTACTGATAGTTCAGACGATTGTGATAAGCTTCTTTCCATCAGCAACATGTATATAGGTGTGAATGGTTGCTCTTTGAAGACAACTGAGAATCTTGATGTTGTGAGGGGCATTCCTGTCGACAGAATGATGATTGAAACAGATTCTCCATATTGTGGAATCAAGAACAGTCATGCTGGGATTAAATTTGTGAAGTCCACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGACCGCAATGAACCTTGTTTGGTTCGGCAAGTTCTTGAGGTGATAGCTGGCTGTAAAGGAATCAGTGATGTAGGTCAGCTGAGCAGGACACTGTACCAGAACACTTGCAGGGTTTTCTTTCCTCAAGACTTGGATTCTGCTGCAGATTCTTTACTTGCTGGGCACGACCCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

319

Amino Acids

35.54

Weight (kDa)

6.16

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 30 - 300 2.3e-51 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 4 cut(s) 13, 136, 261, 787
AclWI GGATC 3 cut(s) 163, 260, 273
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 3 cut(s) 248, 387, 719
AcuI CTGAAG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 217, 878
AfiI CCNNNNNNNGG 4 cut(s) 117, 118, 309, 689
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 5 cut(s) 55, 392, 419, 613, 671
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 6 cut(s) 179, 439, 467, 565, 830, 862
AluI AGCT 6 cut(s) 179, 439, 467, 565, 830, 862
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 91
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 3 cut(s) 163, 260, 273
Ama87I CYCGRG 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 3 cut(s) 300, 525, 737
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 5 cut(s) 122, 439, 464, 467, 923
ApoI RAATTY 3 cut(s) 248, 387, 719
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 526
AsuC2I CCSGG 2 cut(s) 112, 113
AsuHPI GGTGA 2 cut(s) 353, 835
AvaI CYCGRG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 231, 948
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 5 cut(s) 109, 426, 454, 476, 910
BccI CCATC 2 cut(s) 38, 581
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 2 cut(s) 112, 113
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 290
BisI GCNGC 5 cut(s) 123, 440, 465, 468, 924
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 5 cut(s) 124, 441, 466, 469, 925
Bme1390I CCNGG 2 cut(s) 112, 113
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 526
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 112, 113
BmsI GCATC 3 cut(s) 147, 190, 230
BpiI GAAGAC 1 cut(s) 620
Bpu1102I GCTNAGC 1 cut(s) 863
BpuEI CTTGAG 4 cut(s) 182, 456, 839, 891
BpuMI CCSGG 2 cut(s) 112, 113
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 118, 309, 689
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 154, 357
Bse3DI GCAATG 1 cut(s) 796
BseAI TCCGGA 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 4 cut(s) 117, 118, 309, 689
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 2 cut(s) 612, 854
BseNI ACTGG 2 cut(s) 154, 357
BseSI GKGCMC 2 cut(s) 231, 948
BseXI GCAGC 5 cut(s) 109, 426, 454, 476, 910
BseYI CCCAGC 3 cut(s) 518, 710, 941
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 3 cut(s) 302, 527, 739
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 112, 126, 383
BslI CCNNNNNNNGG 4 cut(s) 117, 118, 309, 689
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 645
BsnI GGCC 3 cut(s) 302, 527, 739
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 231, 948
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 155, 265, 763
Bsp1720I GCTNAGC 1 cut(s) 863
BspACI CCGC 4 cut(s) 13, 136, 261, 787
BspANI GGCC 3 cut(s) 302, 527, 739
BspCNI CTCAG 2 cut(s) 613, 855
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 928
BspPI GGATC 3 cut(s) 163, 260, 273
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 796
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 2 cut(s) 154, 357
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 155, 265, 763
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 5 cut(s) 10, 103, 220, 704, 876
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 127, 462, 832
BstDEI CTNAG 5 cut(s) 435, 621, 744, 863, 954
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 3 cut(s) 158, 268, 766
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 155, 265, 763
BstMWI GCNNNNNNNGC 3 cut(s) 122, 135, 524
BstNSI RCATGY 2 cut(s) 431, 586
BstSCI CCNGG 2 cut(s) 110, 111
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 2 cut(s) 231, 948
BstV1I GCAGC 5 cut(s) 109, 426, 454, 476, 910
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 3 cut(s) 302, 527, 739
BtrI CACGTC 1 cut(s) 85
BtsI GCAGTG 2 cut(s) 83, 513
BtsIMutI CAGTG 5 cut(s) 83, 147, 513, 853, 872
Cac8I GCNNGC 3 cut(s) 127, 462, 832
CfoI GCGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 526
Cfr9I CCCGGG 1 cut(s) 111
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 216, 877
CviAII CATG 6 cut(s) 16, 428, 445, 583, 707, 735
CviQI GTAC 2 cut(s) 216, 877
DdeI CTNAG 5 cut(s) 435, 621, 744, 863, 954
DpnI GATC 3 cut(s) 157, 267, 765
DpnII GATC 3 cut(s) 155, 265, 763
EaeI YGGCCR 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 6 cut(s) 19, 431, 448, 586, 710, 738
FatI CATG 6 cut(s) 15, 427, 444, 582, 706, 734
FauI CCCGC 1 cut(s) 254
FauNDI CATATG 1 cut(s) 456
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 5 cut(s) 123, 440, 465, 468, 924
Fsp4HI GCNGC 5 cut(s) 123, 440, 465, 468, 924
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 288
GluI GCNGC 5 cut(s) 123, 440, 465, 468, 924
GsaI CCCAGC 3 cut(s) 522, 714, 945
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 3 cut(s) 302, 527, 739
HapII CCGG 3 cut(s) 112, 126, 383
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 6 cut(s) 19, 431, 448, 586, 710, 738
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 2 cut(s) 34, 655
HindII GTYRAC 2 cut(s) 34, 655
HindIII AAGCTT 2 cut(s) 177, 563
HinfI GANTC 9 cut(s) 60, 167, 510, 625, 677, 693, 843, 917, 929
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 3 cut(s) 112, 126, 383
HphI GGTGA 2 cut(s) 353, 835
Hpy166II GTNNAC 6 cut(s) 34, 133, 229, 350, 655, 732
Hpy188I TCNGA 2 cut(s) 91, 550
Hpy188III TCNNGA 8 cut(s) 269, 383, 473, 629, 697, 767, 818, 908
Hpy8I GTNNAC 6 cut(s) 34, 133, 229, 350, 655, 732
HpyAV CCTTC 2 cut(s) 319, 750
HpyCH4III ACNGT 5 cut(s) 10, 103, 220, 704, 876
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 135, 524
HpyF3I CTNAG 5 cut(s) 435, 621, 744, 863, 954
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 6 cut(s) 19, 431, 448, 586, 710, 738
HspAI GCGC 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 382
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 763
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 155, 265, 763
Lsp1109I GCAGC 5 cut(s) 109, 426, 454, 476, 910
LweI GCATC 3 cut(s) 147, 190, 230
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 157, 267, 765
MbiI CCGCTC 1 cut(s) 261
MboI GATC 3 cut(s) 155, 265, 763
MboII GAAGA 2 cut(s) 625, 760
MfeI CAATTG 2 cut(s) 186, 336
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 231, 948
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 7 cut(s) 186, 248, 336, 387, 419, 486, 719
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 6 cut(s) 157, 301, 390, 633, 814, 915
Mox20I TGGCCA 1 cut(s) 302
MroI TCCGGA 1 cut(s) 382
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 302
MseI TTAA 4 cut(s) 33, 182, 717, 780
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 2 cut(s) 467, 862
MspI CCGG 3 cut(s) 112, 126, 383
MspR9I CCNGG 2 cut(s) 112, 113
MunI CAATTG 2 cut(s) 186, 336
Mva1269I GAATGC 1 cut(s) 645
MwoI GCNNNNNNNGC 3 cut(s) 122, 135, 524
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 2 cut(s) 112, 113
NdeI CATATG 1 cut(s) 456
NdeII GATC 3 cut(s) 155, 265, 763
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 6 cut(s) 19, 431, 448, 586, 710, 738
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 2 cut(s) 431, 586
PciI ACATGT 1 cut(s) 582
PctI GAATGC 1 cut(s) 645
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 8 cut(s) 167, 510, 625, 677, 693, 843, 917, 929
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 5 cut(s) 124, 441, 466, 469, 925
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 1 cut(s) 582
PspFI CCCAGC 3 cut(s) 518, 710, 941
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 526
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 467, 862
RsaI GTAC 2 cut(s) 217, 878
RsaNI GTAC 2 cut(s) 216, 877
RseI CAYNNNNRTG 1 cut(s) 459
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 4 cut(s) 33, 182, 717, 780
SatI GCNGC 5 cut(s) 123, 440, 465, 468, 924
Sau3AI GATC 3 cut(s) 155, 265, 763
Sau96I GGNCC 1 cut(s) 526
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 112, 113
SduI GDGCHC 2 cut(s) 231, 948
SfaNI GCATC 3 cut(s) 147, 190, 230
SfcI CTRYAG 1 cut(s) 924
SmaI CCCGGG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 4 cut(s) 161, 471, 818, 906
SmoI CTYRAG 4 cut(s) 161, 471, 818, 906
Sse9I AATT 7 cut(s) 186, 248, 336, 387, 419, 486, 719
SsiI CCGC 4 cut(s) 13, 136, 261, 787
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 110, 111
TaaI ACNGT 5 cut(s) 10, 103, 220, 704, 876
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 654
TasI AATT 7 cut(s) 186, 248, 336, 387, 419, 486, 719
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 8 cut(s) 167, 510, 625, 677, 693, 843, 917, 929
Tru1I TTAA 4 cut(s) 33, 182, 717, 780
Tru9I TTAA 4 cut(s) 33, 182, 717, 780
TscAI CASTG 5 cut(s) 83, 154, 520, 853, 879
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 5 cut(s) 122, 439, 464, 467, 923
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 522, 807
TspMI CCCGGG 1 cut(s) 111
TspRI CASTG 5 cut(s) 83, 154, 520, 853, 879
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 227
XapI RAATTY 3 cut(s) 248, 387, 719
XceI RCATGY 2 cut(s) 431, 586
XmaI CCCGGG 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.