Rmu_sc0010132.1_g000001

PHD finger protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010132.1
Physical Location & Seq
Forward (+)
646 .. 5910
5265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010132.1_g000001.1.cds

Sequence Viewer

Length: 1764 bp
atggacactctaggatggagtggtcatccagtttgcgggaaacgttatcattttattattaaggctgatggtaattccattggtgggtatcacaagccttgtatgtgctgtggagatgttgtgcatatctacgaatccaagtgcaaatcttgcaaccttgatgctagtacagatgatgttgaagattgggtgtacaaccaattagagaacacaacccatcttctgcatggagtggtccattcaaatggttttggacaccttcttagggtcaatggaagggaaggtggctcgaggatgctttctggatgtcatatcatggacttttgggaccggctctgtaaagtgcttggagtgagaatggtcagtgtgatggatgtgtcaaagaagtatgggctggaatatcggctacttcatgcaattatcaaaggacatccctggtatggtgactggggttatgaatttgctactggtagttttgctctcactcttgatgcctataatttggctgttgaaaaactctctaccctacccctgtccacctttcttgctcaacgtcgatttccatcttgcatccgtgacatcatcttgcgataccagtccctatcagaacgtgagcttttgaatataagagatctctttggtttcttgattaaattgctccatgatgctcccaagtgttcttcaagggttgatgatgccatgagcaagaagcgacgtgcttccggagttttgtattcatggaccaagagtgatgttgaatgtgtagaagaggccatggtcaaggtgctgcgtgcagttactgggtcaaattgggtaaatcagcgtaatcttaggaaagccatatacaaggggcaaccatctgatctcctggattattgcctgaacgaacttggagggaaaacggtagcagatgggatctttgttagttcgagacgcaatgctgatggtgattttgagtacagacttgaggctggaagtagtgcatcaaactgctcttccacctctagaagcctatcagaagaaagtctcgtactggacatgcgcttcttatatgagtccatgctccacccccaaactatgatgaaagatttgcctcaggaaacaagggatcttgcaatcagctgtgctgaaaagctacttgactgcaagcagtttgtgaaagactacaggcccgaaaggatgtcaattaatgacccatctgttacatgtctcttatgtagagttgaatttacagacgagtctgaagaatatgcctccctggatccccctccagaactgattgtgctatccaatgctactgtatctgatctcaagcttgcagcatcaaaagcttttcaagatgtgtatttgacgttgaagaggtttcaagctgaagagttggttgactatggcagtgttgatgaatccacccaggttaagaagttgttagggttagcagaatatgttcgagtgagagggcggtgcaatgcaaagagcggatggagtaagtttagcatggagagggggattgagaggtggacagtggagtgcagctgtggggcaaaggatgatgatggagagagaatgttggcttgtgatgtttgtggtgtgtggcggcacactcgatgttctggaatcccagactctgattcggttcctacaaattttgtttgtcaaggatgtaaaagctcagtttcagtaacaaaaaatgctgggccttgcaaggatgaggcggttgctaaggttgctggagaaagtttgactgcccctcctggcgctcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

65.56

Weight (kDa)

6.3

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1476
AccIII TCCGGA 1 cut(s) 722
AciI CCGC 5 cut(s) 36, 1459, 1476, 1594, 1712
AclI AACGTT 1 cut(s) 43
AclWI GGATC 4 cut(s) 923, 1116, 1256, 1269
AcsI RAATTY 3 cut(s) 458, 1226, 1642
AcuI CTGAAG 2 cut(s) 1263, 1392
AfaI GTAC 4 cut(s) 169, 194, 959, 1032
AfiI CCNNNNNNNGG 4 cut(s) 35, 84, 265, 440
AflIII ACRYGT 1 cut(s) 1205
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 5 cut(s) 434, 867, 1257, 1410, 1750
AluBI AGCT 8 cut(s) 616, 1122, 1135, 1315, 1331, 1370, 1533, 1668
AluI AGCT 8 cut(s) 616, 1122, 1135, 1315, 1331, 1370, 1533, 1668
Alw26I GTCTC 3 cut(s) 925, 1031, 1214
AlwI GGATC 4 cut(s) 923, 1116, 1256, 1269
AlwNI CAGNNNCTG 2 cut(s) 800, 1625
Ama87I CYCGRG 1 cut(s) 289
Aor13HI TCCGGA 1 cut(s) 722
AoxI GGCC 3 cut(s) 771, 1169, 1694
ApeKI GCWGC 3 cut(s) 787, 1319, 1530
ApoI RAATTY 3 cut(s) 458, 1226, 1642
AseI ATTAAT 1 cut(s) 1188
Asp700I GAANNNNTTC 1 cut(s) 1443
AspLEI GCGC 2 cut(s) 1044, 1757
AspS9I GGNCC 5 cut(s) 235, 328, 741, 1170, 1694
AsuHPI GGTGA 2 cut(s) 455, 959
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 3 cut(s) 235, 328, 741
AxyI CCTNAGG 1 cut(s) 1095
BamHI GGATCC 1 cut(s) 1261
BbvI GCAGC 3 cut(s) 774, 1331, 1542
BciT130I CCWGG 5 cut(s) 436, 869, 1259, 1412, 1752
BcoDI GTCTC 3 cut(s) 925, 1031, 1214
BfaI CTAG 3 cut(s) 11, 165, 1005
BfmI CTRYAG 1 cut(s) 1165
BfoI RGCGCY 1 cut(s) 1758
BglII AGATCT 1 cut(s) 631
BisI GCNGC 4 cut(s) 788, 1320, 1531, 1595
BlsI GCNGC 4 cut(s) 789, 1321, 1532, 1596
Bme1390I CCNGG 5 cut(s) 436, 869, 1259, 1412, 1752
Bme18I GGWCC 3 cut(s) 235, 328, 741
BmeT110I CYCGRG 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 5 cut(s) 235, 328, 741, 1170, 1694
BmiI GGNNCC 3 cut(s) 329, 1263, 1635
BmrFI CCNGG 5 cut(s) 436, 869, 1259, 1412, 1752
BmrI ACTGGG 2 cut(s) 457, 810
BmsI GCATC 8 cut(s) 151, 285, 481, 579, 655, 685, 992, 1331
BmuI ACTGGG 2 cut(s) 457, 810
BpmI CTGGAG 2 cut(s) 1254, 1749
Bpu10I CCTNAGC 1 cut(s) 1719
BpuEI CTTGAG 2 cut(s) 986, 1295
BsaBI GATNNNNATC 1 cut(s) 562
BsaJI CCNNGG 4 cut(s) 434, 774, 1257, 1410
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 1732, 1762
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 84, 265, 440
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 6 cut(s) 29, 452, 472, 595, 805, 1038
Bse21I CCTNAGG 1 cut(s) 1095
Bse3DI GCAATG 2 cut(s) 943, 1471
Bse8I GATNNNNATC 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 722
BseBI CCWGG 5 cut(s) 436, 869, 1259, 1412, 1752
BseDI CCNNGG 4 cut(s) 434, 774, 1257, 1410
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 4 cut(s) 35, 84, 265, 440
BseMI GCAATG 2 cut(s) 943, 1471
BseMII CTCAG 2 cut(s) 1109, 1683
BseNI ACTGG 6 cut(s) 29, 452, 472, 595, 805, 1038
BseXI GCAGC 3 cut(s) 774, 1331, 1542
BseYI CCCAGC 1 cut(s) 1691
BsgI GTGCAG 2 cut(s) 813, 1549
BshFI GGCC 3 cut(s) 773, 1171, 1696
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 331, 723
BslFI GGGAC 2 cut(s) 341, 583
BslI CCNNNNNNNGG 4 cut(s) 35, 84, 265, 440
BsmAI GTCTC 3 cut(s) 925, 1031, 1214
BsmBI CGTCTC 1 cut(s) 925
BsmFI GGGAC 2 cut(s) 341, 583
BsnI GGCC 3 cut(s) 773, 1171, 1696
BsoBI CYCGRG 1 cut(s) 289
Bsp13I TCCGGA 1 cut(s) 722
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 5 cut(s) 36, 1459, 1476, 1594, 1712
BspANI GGCC 3 cut(s) 773, 1171, 1696
BspCNI CTCAG 2 cut(s) 1108, 1682
BspEI TCCGGA 1 cut(s) 722
BspLI GGNNCC 3 cut(s) 329, 1263, 1635
BspPI GGATC 4 cut(s) 923, 1116, 1256, 1269
BspQI GCTCTTC 1 cut(s) 1000
BsrBI CCGCTC 1 cut(s) 1476
BsrDI GCAATG 2 cut(s) 943, 1471
BsrFI RCCGGY 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 6 cut(s) 29, 452, 472, 595, 805, 1038
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 4 cut(s) 434, 774, 1257, 1410
BssMI GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 5 cut(s) 436, 869, 1259, 1412, 1752
Bst4CI ACNGT 3 cut(s) 904, 1300, 1522
Bst6I CTCTTC 4 cut(s) 762, 1000, 1352, 1368
BstAPI GCANNNNNTGC 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 792, 1148, 1317, 1759
BstDEI CTNAG 5 cut(s) 263, 830, 1095, 1669, 1719
BstDSI CCRYGG 1 cut(s) 774
BstH2I RGCGCY 1 cut(s) 1758
BstHHI GCGC 2 cut(s) 1044, 1757
BstKTI GATC 6 cut(s) 634, 865, 918, 1111, 1264, 1309
BstMAI GTCTC 3 cut(s) 925, 1031, 1214
BstMBI GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
BstMWI GCNNNNNNNGC 3 cut(s) 150, 1328, 1724
BstNI CCWGG 5 cut(s) 436, 869, 1259, 1412, 1752
BstNSI RCATGY 2 cut(s) 1042, 1209
BstSCI CCNGG 5 cut(s) 434, 867, 1257, 1410, 1750
BstSFI CTRYAG 1 cut(s) 1165
BstV1I GCAGC 3 cut(s) 774, 1331, 1542
BstX2I RGATCY 4 cut(s) 631, 915, 1108, 1261
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 4 cut(s) 631, 915, 1108, 1261
Bsu36I CCTNAGG 1 cut(s) 1095
BsuRI GGCC 3 cut(s) 773, 1171, 1696
BtgI CCRYGG 1 cut(s) 774
BtrI CACGTC 1 cut(s) 716
BtsI GCAGTG 1 cut(s) 1399
BtsIMutI CAGTG 3 cut(s) 370, 1399, 1527
Cac8I GCNNGC 4 cut(s) 792, 1148, 1317, 1759
CaiI CAGNNNCTG 2 cut(s) 800, 1625
CfoI GCGC 2 cut(s) 1044, 1757
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 5 cut(s) 235, 328, 741, 1170, 1694
CseI GACGC 1 cut(s) 942
Csp6I GTAC 4 cut(s) 168, 193, 958, 1031
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviQI GTAC 4 cut(s) 168, 193, 958, 1031
DdeI CTNAG 5 cut(s) 263, 830, 1095, 1669, 1719
DpnI GATC 6 cut(s) 633, 864, 917, 1110, 1263, 1308
DpnII GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
Eam1104I CTCTTC 4 cut(s) 762, 1000, 1352, 1368
EarI CTCTTC 4 cut(s) 762, 1000, 1352, 1368
Eco130I CCWWGG 1 cut(s) 774
Eco47I GGWCC 3 cut(s) 235, 328, 741
Eco57I CTGAAG 2 cut(s) 1263, 1392
Eco81I CCTNAGG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 5 cut(s) 434, 867, 1257, 1410, 1750
EcoT14I CCWWGG 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 925
FaqI GGGAC 2 cut(s) 341, 583
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 788, 1320, 1531, 1595
Fsp4HI GCNGC 4 cut(s) 788, 1320, 1531, 1595
FspBI CTAG 3 cut(s) 11, 165, 1005
GlaI GCGC 2 cut(s) 1043, 1756
GluI GCNGC 4 cut(s) 788, 1320, 1531, 1595
GsaI CCCAGC 1 cut(s) 1695
GsuI CTGGAG 2 cut(s) 1254, 1749
HaeII RGCGCY 1 cut(s) 1758
HaeIII GGCC 3 cut(s) 773, 1171, 1696
HapII CCGG 2 cut(s) 331, 723
HgaI GACGC 1 cut(s) 942
HhaI GCGC 2 cut(s) 1044, 1757
Hin6I GCGC 2 cut(s) 1042, 1755
HinP1I GCGC 2 cut(s) 1042, 1755
HincII GTYRAC 1 cut(s) 1384
HindII GTYRAC 1 cut(s) 1384
HindIII AAGCTT 2 cut(s) 1313, 1329
HinfI GANTC 7 cut(s) 134, 1055, 1238, 1403, 1614, 1622, 1628
HpaII CCGG 2 cut(s) 331, 723
HphI GGTGA 2 cut(s) 455, 959
Hpy166II GTNNAC 4 cut(s) 193, 537, 1384, 1518
Hpy188I TCNGA 6 cut(s) 607, 862, 1018, 1243, 1306, 1627
Hpy8I GTNNAC 4 cut(s) 193, 537, 1384, 1518
Hpy99I CGWCG 2 cut(s) 558, 717
HpyAV CCTTC 3 cut(s) 269, 270, 275
HpyCH4III ACNGT 3 cut(s) 904, 1300, 1522
HpyCH4IV ACGT 5 cut(s) 43, 553, 610, 715, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 1328, 1724
HpyF3I CTNAG 5 cut(s) 263, 830, 1095, 1669, 1719
HpySE526I ACGT 5 cut(s) 43, 553, 610, 715, 1352
HspAI GCGC 2 cut(s) 1042, 1755
Kpn2I TCCGGA 1 cut(s) 722
Kzo9I GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
LguI GCTCTTC 1 cut(s) 1000
LmnI GCTCC 3 cut(s) 663, 673, 1068
Lsp1109I GCAGC 3 cut(s) 774, 1331, 1542
LweI GCATC 8 cut(s) 151, 285, 481, 579, 655, 685, 992, 1331
MaeI CTAG 3 cut(s) 11, 165, 1005
MaeII ACGT 5 cut(s) 43, 553, 610, 715, 1352
MaeIII GTNAC 5 cut(s) 443, 575, 796, 1201, 1678
MalI GATC 6 cut(s) 633, 864, 917, 1110, 1263, 1308
MbiI CCGCTC 1 cut(s) 1476
MboI GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
MboII GAAGA 9 cut(s) 194, 212, 672, 779, 987, 1031, 1256, 1369, 1385
MflI RGATCY 4 cut(s) 631, 915, 1108, 1261
MlyI GAGTC 3 cut(s) 1064, 1247, 1616
MroI TCCGGA 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 1443
MseI TTAA 4 cut(s) 60, 651, 1188, 1416
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 1122, 1533
MspI CCGG 2 cut(s) 331, 723
MspR9I CCNGG 5 cut(s) 436, 869, 1259, 1412, 1752
MvaI CCWGG 5 cut(s) 436, 869, 1259, 1412, 1752
MwoI GCNNNNNNNGC 3 cut(s) 150, 1328, 1724
NcoI CCATGG 1 cut(s) 774
NdeII GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
NlaIV GGNNCC 3 cut(s) 329, 1263, 1635
NmuCI GTSAC 2 cut(s) 443, 575
NspI RCATGY 2 cut(s) 1042, 1209
PaeR7I CTCGAG 1 cut(s) 289
PciI ACATGT 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 1000
PdmI GAANNNNTTC 1 cut(s) 1443
PfeI GAWTC 4 cut(s) 134, 1403, 1614, 1628
PfoI TCCNGGA 1 cut(s) 867
PkrI GCNGC 4 cut(s) 789, 1321, 1532, 1596
PleI GAGTC 3 cut(s) 1063, 1246, 1616
PpsI GAGTC 3 cut(s) 1063, 1246, 1616
PscI ACATGT 1 cut(s) 1205
PshBI ATTAAT 1 cut(s) 1188
Psp1406I AACGTT 1 cut(s) 43
Psp6I CCWGG 5 cut(s) 434, 867, 1257, 1410, 1750
PspFI CCCAGC 1 cut(s) 1691
PspGI CCWGG 5 cut(s) 434, 867, 1257, 1410, 1750
PspN4I GGNNCC 3 cut(s) 329, 1263, 1635
PspPI GGNCC 5 cut(s) 235, 328, 741, 1170, 1694
PspXI VCTCGAGB 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 800, 1625
PsuI RGATCY 4 cut(s) 631, 915, 1108, 1261
PvuII CAGCTG 2 cut(s) 1122, 1533
RsaI GTAC 4 cut(s) 169, 194, 959, 1032
RsaNI GTAC 4 cut(s) 168, 193, 958, 1031
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 1000
SaqAI TTAA 4 cut(s) 60, 651, 1188, 1416
SatI GCNGC 4 cut(s) 788, 1320, 1531, 1595
Sau3AI GATC 6 cut(s) 631, 862, 915, 1108, 1261, 1306
Sau96I GGNCC 5 cut(s) 235, 328, 741, 1170, 1694
SchI GAGTC 3 cut(s) 1064, 1247, 1616
ScrFI CCNGG 5 cut(s) 436, 869, 1259, 1412, 1752
SfaNI GCATC 8 cut(s) 151, 285, 481, 579, 655, 685, 992, 1331
SfcI CTRYAG 1 cut(s) 1165
Sfr274I CTCGAG 1 cut(s) 289
SinI GGWCC 3 cut(s) 235, 328, 741
SlaI CTCGAG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 289, 965, 1310
SmoI CTYRAG 3 cut(s) 289, 965, 1310
SsiI CCGC 5 cut(s) 36, 1459, 1476, 1594, 1712
SspMI CTAG 3 cut(s) 11, 165, 1005
StyD4I CCNGG 5 cut(s) 434, 867, 1257, 1410, 1750
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 3 cut(s) 904, 1300, 1522
TaiI ACGT 5 cut(s) 46, 556, 613, 718, 1355
TaqI TCGA 5 cut(s) 290, 556, 929, 1447, 1603
TatI WGTACW 3 cut(s) 167, 192, 957
TauI GCSGC 1 cut(s) 1597
TfiI GAWTC 4 cut(s) 134, 1403, 1614, 1628
Tru1I TTAA 4 cut(s) 60, 651, 1188, 1416
Tru9I TTAA 4 cut(s) 60, 651, 1188, 1416
TscAI CASTG 3 cut(s) 370, 1399, 1527
TseFI GTSAC 2 cut(s) 443, 575
TseI GCWGC 3 cut(s) 787, 1319, 1530
Tsp45I GTSAC 2 cut(s) 443, 575
TspDTI ATGAA 5 cut(s) 401, 471, 726, 1097, 1416
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 3 cut(s) 370, 1399, 1527
VpaK11BI GGWCC 3 cut(s) 235, 328, 741
VspI ATTAAT 1 cut(s) 1188
XapI RAATTY 3 cut(s) 458, 1226, 1642
XbaI TCTAGA 1 cut(s) 1004
XceI RCATGY 2 cut(s) 1042, 1209
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 1443
XspI CTAG 3 cut(s) 11, 165, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.