Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005169

Physical Location & Seq

Genomic Coordinates Reverse (-)

30033510 .. 30040288

Gene Structure 6779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGTGGTGAACGAGCGACCTCAGAAGCGGATGAAGCGGCGGATTACGGCGGATCTCAACGACTTCTTCACCTTCCCCTCGTCCTCGTCGCCGCCGGCCGCCACCGGCCCCTTCAGGACCGCCGTCAGGGATTTTCTCTCTAACCATGCGCTGGTTCCTCCGCCGTCGTCCCTCTTCCCTCACCTCATGACGTGGCAGATCCTCTTCAGGGTCGGCGATGCGGATCAGCTCCCGACCACTGCCGCGACGGACGGTCCGGATTCGTTCCCTCCGCCCGTCGTGTGTCTCGATATCGTCGAGGAGGACGTCGCCAGATCTCGAAACGTCTATTGTGATCAGTGCCGAGTTGTCGGATGGAGTGGTCATCCAGTTTGCGGGAAACGTTATCATTTTATTATTAAGGCTGATGGTAATTCCATTGGTGGGTATCACAAGCCTTGTATGTGCTGTGGAGATGTTGTGCATATCTACGAATCCAAGTGCAAATCTTGCAACCTTGATGCTAGTACAGATGATGTTGAAGATTGGGTGTACAACCAATTAGAGAACACAACCCATCTTCTGCATGGAGTGGTCCATTCAAATGGTTTTGGACACCTTCTTAGGGTCAATGGAAGGGAAGGTGGCTCGAGGATGCTTTCTGGATGTCATATCATGGACTTTTGGGACCGGCTCTGTAAAGTGCTTGGAGTGAGAATGGTCAGTGTGATGGATGTGTCAAAGAAGTATGGGCTGGAATATCGGCTACTTCATGCAATTATCAAAGGACATCCCTGGTATGGTGACTGGGGTTATGAATTTGCTACTGGTAGTTTTGCTCTCACTCTTGATGCCTATAATTTGGCTGTTGAAAAACTCTCTACCCTACCCCTGTCCACCTTTCTTGCTCAACGTCGATTTCCATCTTGCATCCGTGACATCATCTTGCGATACCAGTCCCTATCAGAACGTGAGCTTTTGAATATAAGAGATCTCTTTGGTTTCTTGATTAAATTGCTCCATGATGCTCCCAAGTGTTCTTCAAGGGTTGATGATGCCATGAGCAAGAAGCGACGTGCTTCCGGAGTTTTGTATTCATGGACCAAGAGTGATGTTGAATGTGTAGAAGAGGCCATGGTCAAGGTGCTGCGTGCAGTTACTGGGTCAAATTGGGTAAATCAGCGTAATCTTAGGAAAGCCATATACAAGGGGCAACCATCTGATCTCCTGGATTATTGCCTGAACGAACTTGGAGGGAAAACGGTTGCAGATGGGATCTTTGTTAGTTCTAGACGCAATGCTGATGGTGATTTTGAGTACAGACTTGAGGCTGGAAGTAGTGCATCAAACTGCTCTTCCACCTCTAGAAGCCTATCAGAAGAAAGTCTCGTACTGGACATGCGCTTCTTATATGAGTCCATGCTCCACCCCCAAACTATGATGAAAGATTTGCCTCAGGAAACAAGGGATCTTGCAATCAGCTGTGCTGAAAAGCTACTTGACTGCAAGCAGTTTGTGAAAGACTACAGGCCCGAAAGGATGTCAATTAATGACCCATCTGTTACATGTCTCTTATGTAGAGTTGAATTTACAGACGAGTCTGAAGAATATGCCTCCCTGGATCCCCCTCCAGAACTGATTGTGCTATCCAATGCTACTGTATCTGATCTCAAGCTTGCAGCATCAAAAGCTTTTCAAGATGTGTATTTGACGTTGAAGAGGTTTCAAGCTGAAGAGTTGGTTGACTATGGCAGTGTTGATGAATCCACCCAGGTTAAGAAGTTGTTAGGGTTAGCAGAATATGTTCGAGTGAGAGGGCGGTGCAATGCAAAGAGCGGATGGAGTAAGTTTAGCATGGAGAGAGGGATTGAGAGGTGGACAGTGGAGTGCAGCTGTGGGGCAAAGGATGATGATGGAGAGAGAATGTTGGCTTGTGATGTTTGTGGTGTGTGGCGGCACACTCGATGTTCTGGAATCCCAGACTCTGATTCGGTTCCTACAAATTTTGTTTGTCAAGGATGTAAAAGCTCAGTTTCAGTAACAAAAAATGCTGGGCCTTGCAAGGATGAGGCGGTTGCTAAGGTTGCTGGAGAAAGTTTGACTGCCCCTCCTGGCGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

700

Amino Acids

78.13

Weight (kDa)

6.38

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	360 - 436	9.7e-07	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	512 - 601	8.6e-28	At1g33420-like, ubiquitin-like domain
PHD	PF00628	623 - 667	2.7e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980
malus_domestica	MD15G1141000.v1.1
prunus_persica	Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1
pyrus_communis	pycom15g12740
rosa_chinensis	RchiOBHm_Chr3g0485271
rosa_laevigata	RLG00000023161
rosa_multiflora	Rmu_sc0001136.1_g000035 Rmu_sc0010132.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397140
rosa_rugosa	Rorug03G0217200 Rorug03G0217300 Rorug03G0217400
rosa_samantha	Rh3AG266600 Rh3BG302300 Rh3CG300300 Rh3DG296500
rosa_wichuraiana	Rw3G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	1815
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	2 cut(s)	256, 1061
AclI	AACGTT	1 cut(s)	382
AclWI	GGATC	7 cut(s)	60, 193, 231, 1262, 1455, 1595, 1608
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	797, 1565, 1981
AcuI	CTGAAG	4 cut(s)	97, 190, 1602, 1731
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	4 cut(s)	508, 533, 1298, 1371
AfiI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 374, 423, 604, 779
AflIII	ACRYGT	1 cut(s)	1544
AhdI	GACNNNNNGTC	1 cut(s)	252
AjiI	CACGTC	2 cut(s)	192, 1055
AjnI	CCWGG	5 cut(s)	773, 1206, 1596, 1749, 2089
AluBI	AGCT	9 cut(s)	229, 955, 1461, 1474, 1654, 1670, 1709, 1872, 2007
AluI	AGCT	9 cut(s)	229, 955, 1461, 1474, 1654, 1670, 1709, 1872, 2007
Alw26I	GTCTC	3 cut(s)	290, 1370, 1553
AlwI	GGATC	7 cut(s)	60, 193, 231, 1262, 1455, 1595, 1608
AlwNI	CAGNNNCTG	2 cut(s)	1139, 1964
Ama87I	CYCGRG	1 cut(s)	628
Aor13HI	TCCGGA	2 cut(s)	256, 1061
AoxI	GGCC	5 cut(s)	96, 106, 1110, 1508, 2033
ApeKI	GCWGC	3 cut(s)	1126, 1658, 1869
ApoI	RAATTY	3 cut(s)	797, 1565, 1981
AseI	ATTAAT	1 cut(s)	1527
Asp700I	GAANNNNTTC	1 cut(s)	1782
AspLEI	GCGC	3 cut(s)	151, 1383, 2096
AspS9I	GGNCC	8 cut(s)	107, 117, 254, 574, 667, 1080, 1509, 2033
AsuHPI	GGTGA	5 cut(s)	19, 61, 173, 794, 1298
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	5 cut(s)	117, 254, 574, 667, 1080
AxyI	CCTNAGG	1 cut(s)	1434
BamHI	GGATCC	1 cut(s)	1600
BbvI	GCAGC	3 cut(s)	1113, 1670, 1881
BceAI	ACGGC	3 cut(s)	63, 107, 148
BciT130I	CCWGG	5 cut(s)	775, 1208, 1598, 1751, 2091
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	290, 1370, 1553
BfaI	CTAG	3 cut(s)	504, 1269, 1344
BfmI	CTRYAG	1 cut(s)	1504
BfoI	RGCGCY	1 cut(s)	2097
BglII	AGATCT	2 cut(s)	314, 970
BisI	GCNGC	8 cut(s)	38, 92, 99, 243, 1127, 1659, 1870, 1934
BlsI	GCNGC	8 cut(s)	39, 93, 100, 244, 1128, 1660, 1871, 1935
Bme1390I	CCNGG	5 cut(s)	775, 1208, 1598, 1751, 2091
Bme18I	GGWCC	5 cut(s)	117, 254, 574, 667, 1080
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	628
BmgBI	CACGTC	2 cut(s)	192, 1055
BmgT120I	GGNCC	8 cut(s)	107, 117, 254, 574, 667, 1080, 1509, 2033
BmiI	GGNNCC	5 cut(s)	109, 156, 668, 1602, 1974
BmrFI	CCNGG	5 cut(s)	775, 1208, 1598, 1751, 2091
BmrI	ACTGGG	2 cut(s)	796, 1149
BmsI	GCATC	9 cut(s)	208, 490, 624, 820, 918, 994, 1024, 1331, 1670
BmuI	ACTGGG	2 cut(s)	796, 1149
BoxI	GACNNNNGTC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	1593, 2088
Bpu10I	CCTNAGC	1 cut(s)	2058
BpuEI	CTTGAG	2 cut(s)	1325, 1634
BsaBI	GATNNNNATC	2 cut(s)	222, 901
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	773, 1113, 1596, 1749
BsaWI	WCCGGW	2 cut(s)	256, 1061
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 2071, 2101
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 374, 423, 604, 779
Bse118I	RCCGGY	3 cut(s)	94, 104, 669
Bse1I	ACTGG	6 cut(s)	368, 791, 811, 934, 1144, 1377
Bse21I	CCTNAGG	1 cut(s)	1434
Bse3DI	GCAATG	2 cut(s)	1282, 1810
Bse8I	GATNNNNATC	2 cut(s)	222, 901
BseAI	TCCGGA	2 cut(s)	256, 1061
BseBI	CCWGG	5 cut(s)	775, 1208, 1598, 1751, 2091
BseDI	CCNNGG	4 cut(s)	773, 1113, 1596, 1749
BseJI	GATNNNNATC	2 cut(s)	222, 901
BseLI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 374, 423, 604, 779
BseMI	GCAATG	2 cut(s)	1282, 1810
BseMII	CTCAG	3 cut(s)	35, 1448, 2022
BseNI	ACTGG	6 cut(s)	368, 791, 811, 934, 1144, 1377
BseRI	GAGGAG	1 cut(s)	314
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	1113, 1670, 1881
BseYI	CCCAGC	1 cut(s)	2030
BsgI	GTGCAG	2 cut(s)	1152, 1888
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	98, 108, 1112, 1510, 2035
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	5 cut(s)	95, 105, 257, 670, 1062
BslFI	GGGAC	3 cut(s)	154, 680, 922
BslI	CCNNNNNNNGG	7 cut(s)	126, 151, 208, 374, 423, 604, 779
BsmAI	GTCTC	3 cut(s)	290, 1370, 1553
BsmFI	GGGAC	3 cut(s)	154, 680, 922
BsnI	GGCC	5 cut(s)	98, 108, 1112, 1510, 2035
BsoBI	CYCGRG	1 cut(s)	628
Bsp13I	TCCGGA	2 cut(s)	256, 1061
Bsp1407I	TGTACA	1 cut(s)	531
Bsp19I	CCATGG	1 cut(s)	1113
BspANI	GGCC	5 cut(s)	98, 108, 1112, 1510, 2035
BspCNI	CTCAG	3 cut(s)	34, 1447, 2021
BspEI	TCCGGA	2 cut(s)	256, 1061
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	5 cut(s)	109, 156, 668, 1602, 1974
BspPI	GGATC	7 cut(s)	60, 193, 231, 1262, 1455, 1595, 1608
BspQI	GCTCTTC	1 cut(s)	1339
BsrBI	CCGCTC	1 cut(s)	1815
BsrDI	GCAATG	2 cut(s)	1282, 1810
BsrFI	RCCGGY	3 cut(s)	94, 104, 669
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	6 cut(s)	368, 791, 811, 934, 1144, 1377
BssAI	RCCGGY	3 cut(s)	94, 104, 669
BssECI	CCNNGG	4 cut(s)	773, 1113, 1596, 1749
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	1113
Bst2UI	CCWGG	5 cut(s)	775, 1208, 1598, 1751, 2091
Bst4CI	ACNGT	4 cut(s)	254, 1243, 1639, 1861
Bst6I	CTCTTC	6 cut(s)	179, 209, 1101, 1339, 1691, 1707
BstACI	GRCGYC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	5 cut(s)	96, 1131, 1487, 1656, 2098
BstDEI	CTNAG	6 cut(s)	21, 602, 1169, 1434, 2008, 2058
BstDSI	CCRYGG	1 cut(s)	1113
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	2097
BstHHI	GCGC	3 cut(s)	151, 1383, 2096
BstMAI	GTCTC	3 cut(s)	290, 1370, 1553
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 489, 1667, 2063
BstNI	CCWGG	5 cut(s)	775, 1208, 1598, 1751, 2091
BstNSI	RCATGY	2 cut(s)	1381, 1548
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	5 cut(s)	773, 1206, 1596, 1749, 2089
BstSFI	CTRYAG	1 cut(s)	1504
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	1113, 1670, 1881
BstX2I	RGATCY	7 cut(s)	52, 198, 314, 970, 1254, 1447, 1600
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	7 cut(s)	52, 198, 314, 970, 1254, 1447, 1600
BstZI	CGGCCG	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	1434
BsuRI	GGCC	5 cut(s)	98, 108, 1112, 1510, 2035
BtgI	CCRYGG	1 cut(s)	1113
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	2 cut(s)	192, 1055
BtsI	GCAGTG	2 cut(s)	237, 1738
BtsIMutI	CAGTG	5 cut(s)	237, 344, 709, 1738, 1866
Cac8I	GCNNGC	5 cut(s)	96, 1131, 1487, 1656, 2098
CaiI	CAGNNNCTG	2 cut(s)	1139, 1964
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	3 cut(s)	151, 1383, 2096
Cfr10I	RCCGGY	3 cut(s)	94, 104, 669
Cfr13I	GGNCC	8 cut(s)	107, 117, 254, 574, 667, 1080, 1509, 2033
CpoI	CGGWCCG	1 cut(s)	254
CseI	GACGC	1 cut(s)	1281
Csp6I	GTAC	4 cut(s)	507, 532, 1297, 1370
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CspI	CGGWCCG	1 cut(s)	254
CviQI	GTAC	4 cut(s)	507, 532, 1297, 1370
DdeI	CTNAG	6 cut(s)	21, 602, 1169, 1434, 2008, 2058
DriI	GACNNNNNGTC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	6 cut(s)	179, 209, 1101, 1339, 1691, 1707
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	6 cut(s)	179, 209, 1101, 1339, 1691, 1707
EciI	GGCGGA	4 cut(s)	55, 65, 150, 261
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	1113
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	5 cut(s)	117, 254, 574, 667, 1080
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	4 cut(s)	97, 190, 1602, 1731
Eco81I	CCTNAGG	1 cut(s)	1434
Eco88I	CYCGRG	1 cut(s)	628
EcoRII	CCWGG	5 cut(s)	773, 1206, 1596, 1749, 2089
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	1113
ErhI	CCWWGG	1 cut(s)	1113
FaqI	GGGAC	3 cut(s)	154, 680, 922
FauI	CCCGC	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	8 cut(s)	38, 92, 99, 243, 1127, 1659, 1870, 1934
Fsp4HI	GCNGC	8 cut(s)	38, 92, 99, 243, 1127, 1659, 1870, 1934
FspBI	CTAG	3 cut(s)	504, 1269, 1344
GlaI	GCGC	3 cut(s)	150, 1382, 2095
GluI	GCNGC	8 cut(s)	38, 92, 99, 243, 1127, 1659, 1870, 1934
GsaI	CCCAGC	1 cut(s)	2034
GsuI	CTGGAG	2 cut(s)	1593, 2088
HaeII	RGCGCY	1 cut(s)	2097
HaeIII	GGCC	5 cut(s)	98, 108, 1112, 1510, 2035
HapII	CCGG	5 cut(s)	95, 105, 257, 670, 1062
HgaI	GACGC	1 cut(s)	1281
HhaI	GCGC	3 cut(s)	151, 1383, 2096
Hin1I	GRCGYC	1 cut(s)	306
Hin6I	GCGC	3 cut(s)	149, 1381, 2094
HinP1I	GCGC	3 cut(s)	149, 1381, 2094
HincII	GTYRAC	1 cut(s)	1723
HindII	GTYRAC	1 cut(s)	1723
HindIII	AAGCTT	2 cut(s)	1652, 1668
HinfI	GANTC	8 cut(s)	260, 473, 1394, 1577, 1742, 1953, 1961, 1967
HpaII	CCGG	5 cut(s)	95, 105, 257, 670, 1062
HphI	GGTGA	5 cut(s)	19, 61, 173, 794, 1298
Hpy166II	GTNNAC	5 cut(s)	10, 532, 876, 1723, 1857
Hpy188I	TCNGA	8 cut(s)	24, 353, 946, 1201, 1357, 1582, 1645, 1966
Hpy8I	GTNNAC	5 cut(s)	10, 532, 876, 1723, 1857
Hpy99I	CGWCG	8 cut(s)	91, 169, 250, 281, 299, 311, 897, 1056
HpyAV	CCTTC	5 cut(s)	82, 121, 608, 609, 614
HpyCH4III	ACNGT	4 cut(s)	254, 1243, 1639, 1861
HpyCH4IV	ACGT	8 cut(s)	191, 306, 324, 382, 892, 949, 1054, 1691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 489, 1667, 2063
HpyF3I	CTNAG	6 cut(s)	21, 602, 1169, 1434, 2008, 2058
HpySE526I	ACGT	8 cut(s)	191, 306, 324, 382, 892, 949, 1054, 1691
Hsp92I	GRCGYC	1 cut(s)	306
HspAI	GCGC	3 cut(s)	149, 1381, 2094
Kpn2I	TCCGGA	2 cut(s)	256, 1061
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	1339
LmnI	GCTCC	4 cut(s)	234, 1002, 1012, 1407
Lsp1109I	GCAGC	3 cut(s)	1113, 1670, 1881
LweI	GCATC	9 cut(s)	208, 490, 624, 820, 918, 994, 1024, 1331, 1670
MaeI	CTAG	3 cut(s)	504, 1269, 1344
MaeII	ACGT	8 cut(s)	191, 306, 324, 382, 892, 949, 1054, 1691
MaeIII	GTNAC	5 cut(s)	782, 914, 1135, 1540, 2017
MbiI	CCGCTC	1 cut(s)	1815
MflI	RGATCY	7 cut(s)	52, 198, 314, 970, 1254, 1447, 1600
MlyI	GAGTC	3 cut(s)	1403, 1586, 1955
MmeI	TCCRAC	1 cut(s)	331
MroI	TCCGGA	2 cut(s)	256, 1061
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	1782
MseI	TTAA	4 cut(s)	399, 990, 1527, 1755
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	1461, 1872
MspI	CCGG	5 cut(s)	95, 105, 257, 670, 1062
MspR9I	CCNGG	5 cut(s)	775, 1208, 1598, 1751, 2091
MvaI	CCWGG	5 cut(s)	775, 1208, 1598, 1751, 2091
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	34, 489, 1667, 2063
NaeI	GCCGGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	1113
NgoMIV	GCCGGC	1 cut(s)	94
NlaIV	GGNNCC	5 cut(s)	109, 156, 668, 1602, 1974
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	782, 914
NspI	RCATGY	2 cut(s)	1381, 1548
PaeR7I	CTCGAG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	1544
PciSI	GCTCTTC	1 cut(s)	1339
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 294, 303
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	1782
PfeI	GAWTC	5 cut(s)	260, 473, 1742, 1953, 1967
PflMI	CCANNNNNTGG	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	1206
PkrI	GCNGC	8 cut(s)	39, 93, 100, 244, 1128, 1660, 1871, 1935
PleI	GAGTC	3 cut(s)	1402, 1585, 1955
PpsI	GAGTC	3 cut(s)	1402, 1585, 1955
PscI	ACATGT	1 cut(s)	1544
PshAI	GACNNNNGTC	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	1527
Psp1406I	AACGTT	1 cut(s)	382
Psp6I	CCWGG	5 cut(s)	773, 1206, 1596, 1749, 2089
PspFI	CCCAGC	1 cut(s)	2030
PspGI	CCWGG	5 cut(s)	773, 1206, 1596, 1749, 2089
PspN4I	GGNNCC	5 cut(s)	109, 156, 668, 1602, 1974
PspPI	GGNCC	8 cut(s)	107, 117, 254, 574, 667, 1080, 1509, 2033
PspXI	VCTCGAGB	1 cut(s)	628
PstNI	CAGNNNCTG	2 cut(s)	1139, 1964
PsuI	RGATCY	7 cut(s)	52, 198, 314, 970, 1254, 1447, 1600
PvuII	CAGCTG	2 cut(s)	1461, 1872
RsaI	GTAC	4 cut(s)	508, 533, 1298, 1371
RsaNI	GTAC	4 cut(s)	507, 532, 1297, 1370
RseI	CAYNNNNRTG	1 cut(s)	582
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	1339
SaqAI	TTAA	4 cut(s)	399, 990, 1527, 1755
SatI	GCNGC	8 cut(s)	38, 92, 99, 243, 1127, 1659, 1870, 1934
Sau96I	GGNCC	8 cut(s)	107, 117, 254, 574, 667, 1080, 1509, 2033
SchI	GAGTC	3 cut(s)	1403, 1586, 1955
ScrFI	CCNGG	5 cut(s)	775, 1208, 1598, 1751, 2091
SfaNI	GCATC	9 cut(s)	208, 490, 624, 820, 918, 994, 1024, 1331, 1670
SfcI	CTRYAG	1 cut(s)	1504
Sfr274I	CTCGAG	1 cut(s)	628
SinI	GGWCC	5 cut(s)	117, 254, 574, 667, 1080
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	3 cut(s)	628, 1304, 1649
SmoI	CTYRAG	3 cut(s)	628, 1304, 1649
SspMI	CTAG	3 cut(s)	504, 1269, 1344
StyD4I	CCNGG	5 cut(s)	773, 1206, 1596, 1749, 2089
StyI	CCWWGG	1 cut(s)	1113
TaaI	ACNGT	4 cut(s)	254, 1243, 1639, 1861
TaiI	ACGT	8 cut(s)	194, 309, 327, 385, 895, 952, 1057, 1694
TaqI	TCGA	7 cut(s)	288, 297, 319, 629, 895, 1786, 1942
TatI	WGTACW	3 cut(s)	506, 531, 1296
TauI	GCSGC	5 cut(s)	40, 94, 101, 245, 1936
TfiI	GAWTC	5 cut(s)	260, 473, 1742, 1953, 1967
Tru1I	TTAA	4 cut(s)	399, 990, 1527, 1755
Tru9I	TTAA	4 cut(s)	399, 990, 1527, 1755
TscAI	CASTG	5 cut(s)	244, 344, 709, 1738, 1866
TseFI	GTSAC	2 cut(s)	782, 914
TseI	GCWGC	3 cut(s)	1126, 1658, 1869
Tsp45I	GTSAC	2 cut(s)	782, 914
TspDTI	ATGAA	6 cut(s)	47, 740, 810, 1065, 1436, 1755
TspGWI	ACGGA	2 cut(s)	263, 902
TspRI	CASTG	5 cut(s)	244, 344, 709, 1738, 1866
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	5 cut(s)	117, 254, 574, 667, 1080
VspI	ATTAAT	1 cut(s)	1527
XapI	RAATTY	3 cut(s)	797, 1565, 1981
XbaI	TCTAGA	2 cut(s)	1268, 1343
XceI	RCATGY	2 cut(s)	1381, 1548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	1782
XspI	CTAG	3 cut(s)	504, 1269, 1344
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.