Rmu_sc0001136.1_g000035

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001136.1
OG0005169
Physical Location & Seq
Forward (+)
159286 .. 159669
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001136.1_g000035.1.cds

Sequence Viewer

Length: 384 bp
atggtggtgaacgagcgacctcagaagcggatgaagcggcggattacggcggatctcaacgacttcttcaccttcccctcgtcctcgtcgccggcggcggccaccggccccttcaggaccgccgtcagggattttctttctaaccatgcgctggttcctccgccgtcgtccctcttccctcacctcatgacgtggcagatcctcttcagggtcggcgatgcggatcagctcccgaccactgccgcgacggacggtccggattcgttccctccgcccgtcgtgtgtctcgatatcgtcgaggaggacgtcgccagatctcgaaacgtctattgtgatcagtgccgagttgtcggtgagttgactcaccgagtcctttgcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

6.26

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccB7I CCANNNNNTGG 1 cut(s) 151
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 3 cut(s) 60, 193, 231
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 97, 190
AcyI GRCGYC 1 cut(s) 306
AfiI CCNNNNNNNGG 3 cut(s) 126, 151, 208
AhdI GACNNNNNGTC 1 cut(s) 252
AjiI CACGTC 1 cut(s) 192
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 3 cut(s) 60, 193, 231
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 99, 106
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 107, 117, 254
AsuHPI GGTGA 5 cut(s) 19, 61, 173, 356, 365
AvaII GGWCC 2 cut(s) 117, 254
BceAI ACGGC 3 cut(s) 63, 107, 148
BcgI CGANNNNNNTGC 1 cut(s) 357
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 290
BglII AGATCT 1 cut(s) 314
BisI GCNGC 4 cut(s) 38, 96, 99, 243
BlsI GCNGC 4 cut(s) 39, 97, 100, 244
Bme18I GGWCC 2 cut(s) 117, 254
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 107, 117, 254
BmiI GGNNCC 2 cut(s) 109, 156
BmsI GCATC 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 151, 208
Bse118I RCCGGY 2 cut(s) 91, 104
Bse8I GATNNNNATC 1 cut(s) 222
BseAI TCCGGA 1 cut(s) 256
BseGI GGATG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 126, 151, 208
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 101, 108
BsiSI CCGG 3 cut(s) 92, 105, 257
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 126, 151, 208
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 101, 108
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 5 cut(s) 52, 198, 223, 314, 334
BspANI GGCC 2 cut(s) 101, 108
BspCNI CTCAG 1 cut(s) 34
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 109, 156
BspPI GGATC 3 cut(s) 60, 193, 231
BsrFI RCCGGY 2 cut(s) 91, 104
BssAI RCCGGY 2 cut(s) 91, 104
BssMI GATC 5 cut(s) 52, 198, 223, 314, 334
BssNI GRCGYC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 179, 209
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 5 cut(s) 55, 201, 226, 317, 337
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 5 cut(s) 52, 198, 223, 314, 334
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstPAI GACNNNNGTC 1 cut(s) 122
BstUI CGCG 1 cut(s) 245
BstX2I RGATCY 3 cut(s) 52, 198, 314
BstYI RGATCY 3 cut(s) 52, 198, 314
BsuRI GGCC 2 cut(s) 101, 108
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 344
Cac8I GCNNGC 1 cut(s) 93
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 2 cut(s) 91, 104
Cfr13I GGNCC 3 cut(s) 107, 117, 254
CpoI CGGWCCG 1 cut(s) 254
CspI CGGWCCG 1 cut(s) 254
CviAII CATG 2 cut(s) 146, 187
CviJI RGCY 3 cut(s) 101, 108, 229
CviKI_1 RGCY 3 cut(s) 101, 108, 229
DdeI CTNAG 1 cut(s) 21
DpnI GATC 5 cut(s) 54, 200, 225, 316, 336
DpnII GATC 5 cut(s) 52, 198, 223, 314, 334
DriI GACNNNNNGTC 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 179, 209
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 2 cut(s) 179, 209
EciI GGCGGA 4 cut(s) 55, 65, 150, 261
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 117, 254
Eco57I CTGAAG 2 cut(s) 97, 190
EcoRV GATATC 1 cut(s) 292
FaeI CATG 2 cut(s) 149, 190
FaiI YATR 2 cut(s) 147, 188
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 145, 186
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 4 cut(s) 38, 96, 99, 243
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 38, 96, 99, 243
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 38, 96, 99, 243
HaeIII GGCC 2 cut(s) 101, 108
HapII CCGG 3 cut(s) 92, 105, 257
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 149, 190
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 3 cut(s) 260, 361, 369
HpaII CCGG 3 cut(s) 92, 105, 257
HphI GGTGA 5 cut(s) 19, 61, 173, 356, 365
Hpy166II GTNNAC 2 cut(s) 10, 360
Hpy188I TCNGA 2 cut(s) 24, 383
Hpy188III TCNNGA 6 cut(s) 115, 187, 232, 257, 287, 318
Hpy8I GTNNAC 2 cut(s) 10, 360
Hpy99I CGWCG 6 cut(s) 91, 169, 250, 281, 299, 311
HpyAV CCTTC 2 cut(s) 82, 121
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 191, 306, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 3 cut(s) 191, 306, 324
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 149, 190
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 256
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 52, 198, 223, 314, 334
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 8 cut(s) 100, 105, 112, 118, 137, 193, 270, 325
LweI GCATC 1 cut(s) 208
MaeII ACGT 3 cut(s) 191, 306, 324
MalI GATC 5 cut(s) 54, 200, 225, 316, 336
MboI GATC 5 cut(s) 52, 198, 223, 314, 334
MboII GAAGA 3 cut(s) 58, 166, 196
MflI RGATCY 3 cut(s) 52, 198, 314
MlyI GAGTC 2 cut(s) 355, 378
MreI CGCCGGCG 1 cut(s) 91
MroI TCCGGA 1 cut(s) 256
MroNI GCCGGC 1 cut(s) 91
MspI CCGG 3 cut(s) 92, 105, 257
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 34
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 5 cut(s) 52, 198, 223, 314, 334
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 149, 190
NlaIV GGNNCC 2 cut(s) 109, 156
NmeAIII GCCGAG 1 cut(s) 368
PagI TCATGA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 3 cut(s) 285, 294, 303
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 4 cut(s) 39, 97, 100, 244
PleI GAGTC 2 cut(s) 355, 377
PpsI GAGTC 2 cut(s) 355, 377
PshAI GACNNNNGTC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 109, 156
PspPI GGNCC 3 cut(s) 107, 117, 254
PsuI RGATCY 3 cut(s) 52, 198, 314
Rsr2I CGGWCCG 1 cut(s) 254
RsrII CGGWCCG 1 cut(s) 254
SatI GCNGC 4 cut(s) 38, 96, 99, 243
Sau3AI GATC 5 cut(s) 52, 198, 223, 314, 334
Sau96I GGNCC 3 cut(s) 107, 117, 254
SchI GAGTC 2 cut(s) 355, 378
SetI ASST 7 cut(s) 22, 74, 186, 194, 231, 309, 327
SfaNI GCATC 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 91
SinI GGWCC 2 cut(s) 117, 254
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 194, 309, 327
TaqI TCGA 3 cut(s) 288, 297, 319
TauI GCSGC 4 cut(s) 40, 98, 101, 245
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 244, 344
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 244, 344
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 117, 254
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.