Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005169

Physical Location & Seq

Genomic Coordinates Forward (+)

19808953 .. 19811000

Gene Structure 2048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAACGACTTGTTATCCCCCAAGTCCTTCTCCCAGGGCTCGCCGGACCACCATGTCATCGAGATGACCCCCTCCGATGCCTCCAGCGACCTCAAGAAGTTCTTCGAGGACGTCGACTTGATCCAAACCGAGCTCAATGACTTGCAGAAGCTCAACACCAGCCTCAGGAGCGCACACGAGCAGAGCAAGACCCTCCACAAGGCCAAGGAAGTCAAGGACCTCCGGACACGGATGGACGCTGACGTTAACCATGCCCTTAAGGCCGTCAAGCTCCTTAAGGTTCGGTTGGAGGCACTGGACCGGTCCAACGCCTCCAGCAGGAGCTTGCCTGGGTGCGGTCCAGGGTCGTCCTCGGACCGGACGAGGACGTCTGTGGTGAGTGGGTTGAGGAAGAAGCTTAAGGATTCTATGGAGAGCTTTAATGACTTGAGACAGAAGATTTCCTCCGAGTACAAGGAGACCGTTCAGAGAAGGTACTTTACGGTGACCGGAGAGAAACCGGACGACAAAACCATTGACCTTCTCATATCTACTGGCGAAAGTGAGACATTTATGCAGAAGGCAATCCAAGAGCAAGGAAGAGGCCAAGTCCTAGACACTATAAACGAGATCCAAGAGAGGCACAATGGTGTAAAAGCCATGGAGAGGAATCTGAACGAGTTGCACCAGGTGTTTCTGGACATGGCAGTCCTGGTTCAAGCTCAGGGTGAGCAGATCGACGACATCGAGCGTCACGTAGATCGAGCTAGTTCGTTCGTGCAACAAGGCACCCAGCAGTTGCAGAAGGCCAGATTCTTGCAGAAAAACACACGCAAATGGACCTGTTATGGTATCCTAATCTTGCTCATCATCACCGGAATCATATTGGCCTCCACGCTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

294

Amino Acids

33.22

Weight (kDa)

7.79

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	29 - 189	1.4e-50	Syntaxin
SNARE	PF05739	237 - 289	1.8e-18	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980 FvH4_1g25980
malus_domestica	MD15G1141000.v1.1
prunus_persica	Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1 Prupe.4G288800_v2.0.a1
pyrus_communis	pycom15g12740
rosa_chinensis	RchiOBHm_Chr3g0485271
rosa_laevigata	RLG00000023161
rosa_multiflora	Rmu_sc0001136.1_g000035 Rmu_sc0010132.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397140
rosa_rugosa	Rorug03G0217200 Rorug03G0217300 Rorug03G0217400
rosa_samantha	Rh3AG266600 Rh3BG302300 Rh3CG300300 Rh3DG296500
rosa_wichuraiana	Rw3G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	53, 367, 686
AatII	GACGTC	2 cut(s)	114, 371
AccB1I	GGYRCC	1 cut(s)	767
AccI	GTMKAC	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	115, 604
AcyI	GRCGYC	2 cut(s)	111, 368
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	452, 476
AfiI	CCNNNNNNNGG	6 cut(s)	165, 199, 318, 335, 357, 645
AflII	CTTAAG	3 cut(s)	257, 275, 398
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	698
AjnI	CCWGG	5 cut(s)	33, 328, 340, 666, 690
AleI	CACNNNNGTG	1 cut(s)	627
AluBI	AGCT	8 cut(s)	133, 151, 271, 324, 397, 417, 701, 746
AluI	AGCT	8 cut(s)	133, 151, 271, 324, 397, 417, 701, 746
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	3 cut(s)	424, 452, 539
AlwI	GGATC	2 cut(s)	115, 604
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	5 cut(s)	201, 261, 583, 786, 867
AsiGI	ACCGGT	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
AsuHPI	GGTGA	4 cut(s)	388, 496, 719, 844
AvaII	GGWCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
AxyI	CCTNAGG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	767
BanII	GRGCYC	2 cut(s)	41, 135
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	5 cut(s)	35, 330, 342, 668, 692
BciVI	GTATCC	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	424, 452, 539
BfaI	CTAG	2 cut(s)	593, 747
BfrI	CTTAAG	3 cut(s)	257, 275, 398
BfuI	GTATCC	1 cut(s)	842
BglI	GCCNNNNNGGC	1 cut(s)	260
Bme1390I	CCNGG	5 cut(s)	35, 330, 342, 668, 692
Bme18I	GGWCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
BmgT120I	GGNCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	5 cut(s)	35, 330, 342, 668, 692
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	67, 298
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	77, 448
BsaAI	YACGTR	1 cut(s)	736
BsaHI	GRCGYC	2 cut(s)	111, 368
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	7 cut(s)	33, 34, 204, 329, 341, 351, 639
BsaWI	WCCGGW	6 cut(s)	222, 300, 357, 488, 499, 854
Bsc4I	CCNNNNNNNGG	6 cut(s)	165, 199, 318, 335, 357, 645
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	300, 538
Bse21I	CCTNAGG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	5 cut(s)	35, 330, 342, 668, 692
BseDI	CCNNGG	7 cut(s)	33, 34, 204, 329, 341, 351, 639
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	6 cut(s)	165, 199, 318, 335, 357, 645
BseMII	CTCAG	2 cut(s)	178, 716
BseNI	ACTGG	2 cut(s)	300, 538
BseYI	CCCAGC	1 cut(s)	771
BshFI	GGCC	5 cut(s)	203, 263, 585, 788, 869
BshNI	GGYRCC	1 cut(s)	767
BshTI	ACCGGT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	7 cut(s)	44, 223, 301, 358, 489, 500, 855
BslI	CCNNNNNNNGG	6 cut(s)	165, 199, 318, 335, 357, 645
BsmAI	GTCTC	3 cut(s)	424, 452, 539
BsnI	GGCC	5 cut(s)	203, 263, 585, 788, 869
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	41, 135
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	120, 609, 714, 739
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	5 cut(s)	203, 263, 585, 788, 869
BspCNI	CTCAG	2 cut(s)	177, 715
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	2 cut(s)	115, 604
BspT107I	GGYRCC	1 cut(s)	767
BspTI	CTTAAG	3 cut(s)	257, 275, 398
BspTNI	GGTCTC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	300, 538
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	7 cut(s)	33, 34, 204, 329, 341, 351, 639
BssMI	GATC	4 cut(s)	120, 609, 714, 739
BssNI	GRCGYC	2 cut(s)	111, 368
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	204, 639
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	5 cut(s)	35, 330, 342, 668, 692
Bst4CI	ACNGT	2 cut(s)	463, 484
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	2 cut(s)	111, 368
BstAFI	CTTAAG	3 cut(s)	257, 275, 398
BstBAI	YACGTR	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	41, 326
BstDEI	CTNAG	2 cut(s)	164, 702
BstDSI	CCRYGG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	484
BstENI	CCTNNNNNAGG	2 cut(s)	197, 316
BstF5I	GGATG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	123, 612, 717, 742
BstMAI	GTCTC	3 cut(s)	424, 452, 539
BstMBI	GATC	4 cut(s)	120, 609, 714, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 260
BstNI	CCWGG	5 cut(s)	35, 330, 342, 668, 692
BstPI	GGTNACC	1 cut(s)	484
BstSCI	CCNGG	5 cut(s)	33, 328, 340, 666, 690
BstX2I	RGATCY	1 cut(s)	609
BstYI	RGATCY	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	5 cut(s)	203, 263, 585, 788, 869
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	41, 326
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
CpoI	CGGWCCG	1 cut(s)	355
CseI	GACGC	2 cut(s)	245, 719
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	451, 475
CspAI	ACCGGT	1 cut(s)	300
CspI	CGGWCCG	1 cut(s)	355
CviAII	CATG	4 cut(s)	53, 251, 640, 682
CviQI	GTAC	2 cut(s)	451, 475
DdeI	CTNAG	2 cut(s)	164, 702
DpnI	GATC	4 cut(s)	122, 611, 716, 741
DpnII	GATC	4 cut(s)	120, 609, 714, 739
DraIII	CACNNNGTG	1 cut(s)	670
DrdI	GACNNNNNNGTC	3 cut(s)	53, 367, 686
DseDI	GACNNNNNNGTC	3 cut(s)	53, 367, 686
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	204, 639
Eco24I	GRGCYC	2 cut(s)	41, 135
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
Eco53kI	GAGCTC	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	2 cut(s)	197, 316
EcoO109I	RGGNCCY	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	484
EcoRII	CCWGG	5 cut(s)	33, 328, 340, 666, 690
EcoT14I	CCWWGG	2 cut(s)	204, 639
EcoT38I	GRGCYC	2 cut(s)	41, 135
ErhI	CCWWGG	2 cut(s)	204, 639
FaeI	CATG	4 cut(s)	56, 254, 643, 685
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	4 cut(s)	52, 250, 639, 681
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	41, 135
FspBI	CTAG	2 cut(s)	593, 747
GlaI	GCGC	1 cut(s)	172
GsaI	CCCAGC	1 cut(s)	775
GsuI	CTGGAG	2 cut(s)	67, 298
HaeIII	GGCC	5 cut(s)	203, 263, 585, 788, 869
HapII	CCGG	7 cut(s)	44, 223, 301, 358, 489, 500, 855
HgaI	GACGC	2 cut(s)	245, 719
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	2 cut(s)	111, 368
Hin1II	CATG	4 cut(s)	56, 254, 643, 685
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	2 cut(s)	115, 247
HindII	GTYRAC	2 cut(s)	115, 247
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	404, 649, 792, 858
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	7 cut(s)	44, 223, 301, 358, 489, 500, 855
HphI	GGTGA	4 cut(s)	388, 496, 719, 844
Hpy166II	GTNNAC	2 cut(s)	115, 247
Hpy188I	TCNGA	5 cut(s)	76, 355, 448, 468, 654
Hpy188III	TCNNGA	5 cut(s)	61, 94, 166, 223, 677
Hpy8I	GTNNAC	2 cut(s)	115, 247
Hpy99I	CGWCG	2 cut(s)	116, 722
HpyAV	CCTTC	5 cut(s)	37, 465, 530, 553, 778
HpyCH4III	ACNGT	2 cut(s)	463, 484
HpyCH4IV	ACGT	4 cut(s)	111, 243, 368, 735
HpyCH4V	TGCA	6 cut(s)	145, 556, 664, 760, 781, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 260
HpyF3I	CTNAG	2 cut(s)	164, 702
HpySE526I	ACGT	4 cut(s)	111, 243, 368, 735
Hsp92I	GRCGYC	2 cut(s)	111, 368
Hsp92II	CATG	4 cut(s)	56, 254, 643, 685
HspAI	GCGC	1 cut(s)	171
Kpn2I	TCCGGA	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	120, 609, 714, 739
LmnI	GCTCC	3 cut(s)	168, 276, 321
LweI	GCATC	1 cut(s)	67
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	2 cut(s)	593, 747
MaeII	ACGT	4 cut(s)	111, 243, 368, 735
MaeIII	GTNAC	2 cut(s)	484, 731
MalI	GATC	4 cut(s)	122, 611, 716, 741
MboI	GATC	4 cut(s)	120, 609, 714, 739
MboII	GAAGA	4 cut(s)	94, 403, 448, 591
MflI	RGATCY	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	41, 135
MmeI	TCCRAC	2 cut(s)	267, 330
MroI	TCCGGA	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	6 cut(s)	246, 258, 276, 399, 420, 883
MslI	CAYNNNNRTG	3 cut(s)	62, 627, 814
MspCI	CTTAAG	3 cut(s)	257, 275, 398
MspI	CCGG	7 cut(s)	44, 223, 301, 358, 489, 500, 855
MspR9I	CCNGG	5 cut(s)	35, 330, 342, 668, 692
MvaI	CCWGG	5 cut(s)	35, 330, 342, 668, 692
MwoI	GCNNNNNNNGC	2 cut(s)	168, 260
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	4 cut(s)	120, 609, 714, 739
NlaIII	CATG	4 cut(s)	56, 254, 643, 685
NlaIV	GGNNCC	1 cut(s)	769
NmuCI	GTSAC	2 cut(s)	484, 731
OliI	CACNNNNGTG	1 cut(s)	627
PasI	CCCWGGG	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	4 cut(s)	111, 359, 723, 732
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	4 cut(s)	404, 649, 792, 858
PinAI	ACCGGT	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	5 cut(s)	33, 328, 340, 666, 690
PspEI	GGTNACC	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	771
PspGI	CCWGG	5 cut(s)	33, 328, 340, 666, 690
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	609
RsaI	GTAC	2 cut(s)	452, 476
RsaNI	GTAC	2 cut(s)	451, 475
RseI	CAYNNNNRTG	3 cut(s)	62, 627, 814
Rsr2I	CGGWCCG	1 cut(s)	355
RsrII	CGGWCCG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	6 cut(s)	246, 258, 276, 399, 420, 883
Sau3AI	GATC	4 cut(s)	120, 609, 714, 739
Sau96I	GGNCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
ScrFI	CCNGG	5 cut(s)	35, 330, 342, 668, 692
SduI	GDGCHC	2 cut(s)	41, 135
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
SmiMI	CAYNNNNRTG	3 cut(s)	62, 627, 814
SmlI	CTYRAG	5 cut(s)	92, 257, 275, 398, 427
SmoI	CTYRAG	5 cut(s)	92, 257, 275, 398, 427
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	593, 747
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	5 cut(s)	33, 328, 340, 666, 690
StyI	CCWWGG	2 cut(s)	204, 639
TaaI	ACNGT	2 cut(s)	463, 484
TaiI	ACGT	4 cut(s)	114, 246, 371, 738
TaqI	TCGA	6 cut(s)	60, 105, 114, 717, 726, 742
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	4 cut(s)	404, 649, 792, 858
Tru1I	TTAA	6 cut(s)	246, 258, 276, 399, 420, 883
Tru9I	TTAA	6 cut(s)	246, 258, 276, 399, 420, 883
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	484, 731
Tsp45I	GTSAC	2 cut(s)	484, 731
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	300
Vha464I	CTTAAG	3 cut(s)	257, 275, 398
VpaK11BI	GGWCC	7 cut(s)	46, 217, 298, 303, 338, 355, 819
XagI	CCTNNNNNAGG	2 cut(s)	197, 316
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	593, 747
ZraI	GACGTC	2 cut(s)	112, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.