Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010643

Physical Location & Seq

Genomic Coordinates Reverse (-)

9152026 .. 9153630

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAAGCCAGCGCCGGACTTGTTGCAGGGTCTCACAACCGCAATGAACTCGTCGTCATTCATGGCCATGAAGAGCACAAGCCATCGAGGAACTTGGACGTACACGTGTGCGAGATATGCGGCGATGGCGTGGGGTTGACGGTGGACGGAAACTTGTTCGTGGCGTGCAACGATTGTGGCTTCCCAGTGTGCAGGCCTTGCTACGAGTACGAGCGGAGGGAAGGCTCCCAGAACTGCCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGCCCCCGAATCGAAGGAGACGACGACGAAGAGGACATTGATGACATTGAACACGAATTCAACATTAATCACGATCATGCGGAAGATGATCACGATCAGATTAACGGCAACAACGCCGCCAGATCACCCTATTATAAGACTAACAATAAGCAGCTGGCTGAAGCCAGGCTCCGTGGAACGAAGAGCTATGGAAGAGGCCCTGATGATCCTGATCGGGAGTCACATTTCCCACCCGTAATCGCCGGAGTCAGATCCCACCCGGTAATGCAGCAGGGCAACCTTGGCGGCAGTGATCAACCTGATGGCTTGAATGATGCCGACATGGCCATTTTTTGTACGGGAGAAGGAAAGGAAAAAGATATATCCGTTGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

217

Amino Acids

23.9

Weight (kDa)

4.89

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	27 - 103	5.8e-41	Zinc-binding RING-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17420
fragaria_vesca	FvH4_1g00670
malus_domestica	MD02G1005600.v1.1 MD15G1150200.v1.1 MD15G1150300.v1.1
prunus_persica	Prupe.7G265400_v2.0.a1
pyrus_communis	pycom02g00450 pycom15g13420 pycom15g13430 pycom15g13440
rosa_chinensis	RchiOBHm_Chr2g0085301 RchiOBHm_Chr2g0175181
rosa_laevigata	RLG00000015676
rosa_multiflora	Rmu_sc0008510.1_g000012
rosa_rugosa	Rorug01G0459400
rosa_samantha	Rh2AG007700 Rh2BG008400 Rh2CG009100 Rh2DG009600
rosa_wichuraiana	Rw2G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	6 cut(s)	40, 120, 214, 353, 390, 558
AclWI	GGATC	2 cut(s)	473, 519
AcoI	YGGCCR	2 cut(s)	64, 597
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	453
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	3 cut(s)	102, 209, 610
AflIII	ACRYGT	2 cut(s)	103, 105
AgsI	TTSAA	4 cut(s)	323, 334, 583, 644
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	427, 459
AluI	AGCT	2 cut(s)	427, 459
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	3 cut(s)	36, 269, 285
AlwI	GGATC	2 cut(s)	473, 519
AoxI	GGCC	4 cut(s)	64, 194, 469, 597
ApeKI	GCWGC	3 cut(s)	273, 424, 541
ApoI	RAATTY	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	390
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BalI	TGGCCA	2 cut(s)	66, 599
BbrPI	CACGTG	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	285, 436, 553
BccI	CCATC	3 cut(s)	91, 119, 569
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	439
BclI	TGATCA	2 cut(s)	361, 565
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	3 cut(s)	36, 269, 285
BfoI	RGCGCY	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	6 cut(s)	121, 274, 390, 425, 542, 559
BlsI	GCNGC	6 cut(s)	122, 275, 391, 426, 543, 560
Bme1390I	CCNGG	2 cut(s)	439, 533
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	226, 443
BmrFI	CCNGG	2 cut(s)	439, 533
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	106
BsaBI	GATNNNNATC	2 cut(s)	366, 483
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	445, 553
Bse1I	ACTGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	2 cut(s)	366, 483
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	445, 553
BseJI	GATNNNNATC	2 cut(s)	366, 483
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	285, 436, 553
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	4 cut(s)	66, 196, 471, 599
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	15, 516, 533
BsmAI	GTCTC	3 cut(s)	36, 269, 285
BsmBI	CGTCTC	2 cut(s)	269, 285
BsnI	GGCC	4 cut(s)	66, 196, 471, 599
Bso31I	GGTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
BspACI	CCGC	6 cut(s)	40, 120, 214, 353, 390, 558
BspANI	GGCC	4 cut(s)	66, 196, 471, 599
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	226, 443
BspPI	GGATC	2 cut(s)	473, 519
BspQI	GCTCTTC	2 cut(s)	66, 449
BspTNI	GGTCTC	1 cut(s)	36
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	445, 553
BssMI	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	4 cut(s)	66, 297, 449, 460
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	10, 166, 194, 429
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	8 cut(s)	349, 364, 370, 398, 481, 487, 527, 568
BstMAI	GTCTC	3 cut(s)	36, 269, 285
BstMBI	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 126, 198, 243, 555, 596
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	437, 531
BstV1I	GCAGC	3 cut(s)	285, 436, 553
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	66, 196, 471, 599
BtgI	CCRYGG	1 cut(s)	445
BtgZI	GCGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	192, 248, 568
Cac8I	GCNNGC	4 cut(s)	10, 166, 194, 429
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	101, 208, 609
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	62, 68, 350, 595
CviQI	GTAC	3 cut(s)	101, 208, 609
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	8 cut(s)	348, 363, 369, 397, 480, 486, 526, 567
DpnII	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
EaeI	YGGCCR	2 cut(s)	64, 597
Eam1104I	CTCTTC	4 cut(s)	66, 297, 449, 460
EarI	CTCTTC	4 cut(s)	66, 297, 449, 460
Eco130I	CCWWGG	1 cut(s)	553
Eco147I	AGGCCT	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	453
Eco72I	CACGTG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	2 cut(s)	269, 285
FaeI	CATG	4 cut(s)	65, 71, 353, 598
FaiI	YATR	8 cut(s)	63, 69, 118, 351, 408, 462, 596, 635
FatI	CATG	4 cut(s)	61, 67, 349, 594
FbaI	TGATCA	2 cut(s)	361, 565
Fnu4HI	GCNGC	6 cut(s)	121, 274, 390, 425, 542, 559
Fsp4HI	GCNGC	6 cut(s)	121, 274, 390, 425, 542, 559
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	6 cut(s)	121, 274, 390, 425, 542, 559
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	66, 196, 471, 599
HapII	CCGG	3 cut(s)	15, 516, 533
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	65, 71, 353, 598
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	282, 491, 519
HpaII	CCGG	3 cut(s)	15, 516, 533
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	3 cut(s)	103, 138, 145
Hpy188I	TCNGA	2 cut(s)	372, 524
Hpy188III	TCNNGA	4 cut(s)	344, 365, 482, 488
Hpy8I	GTNNAC	3 cut(s)	103, 138, 145
Hpy99I	CGWCG	3 cut(s)	56, 299, 302
HpyAV	CCTTC	3 cut(s)	215, 281, 611
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	99, 105
HpyCH4V	TGCA	5 cut(s)	26, 168, 192, 246, 541
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 126, 198, 243, 555, 596
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	99, 105
Hsp92II	CATG	4 cut(s)	65, 71, 353, 598
HspAI	GCGC	1 cut(s)	12
Ksp22I	TGATCA	2 cut(s)	361, 565
Kzo9I	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
LguI	GCTCTTC	2 cut(s)	66, 449
LmnI	GCTCC	2 cut(s)	230, 447
Lsp1109I	GCAGC	3 cut(s)	285, 436, 553
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	2 cut(s)	99, 105
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	8 cut(s)	348, 363, 369, 397, 480, 486, 526, 567
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
MboII	GAAGA	5 cut(s)	83, 314, 368, 466, 477
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	2 cut(s)	66, 599
MluCI	AATT	2 cut(s)	329, 646
MluNI	TGGCCA	2 cut(s)	66, 599
MlyI	GAGTC	2 cut(s)	500, 528
MnlI	CCTC	5 cut(s)	81, 210, 249, 298, 461
Mox20I	TGGCCA	2 cut(s)	66, 599
MscI	TGGCCA	2 cut(s)	66, 599
MseI	TTAA	2 cut(s)	339, 375
MslI	CAYNNNNRTG	2 cut(s)	66, 348
Msp20I	TGGCCA	2 cut(s)	66, 599
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	3 cut(s)	15, 516, 533
MspR9I	CCNGG	2 cut(s)	439, 533
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	6 cut(s)	117, 126, 198, 243, 555, 596
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
NlaIII	CATG	4 cut(s)	65, 71, 353, 598
NlaIV	GGNNCC	2 cut(s)	226, 443
NmuCI	GTSAC	1 cut(s)	492
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	2 cut(s)	66, 449
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	6 cut(s)	122, 275, 391, 426, 543, 560
PleI	GAGTC	2 cut(s)	499, 527
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
PpsI	GAGTC	2 cut(s)	499, 527
Ppu21I	YACGTR	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	437
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	226, 443
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	3 cut(s)	102, 209, 610
RsaNI	GTAC	3 cut(s)	101, 208, 609
RseI	CAYNNNNRTG	2 cut(s)	66, 348
SapI	GCTCTTC	2 cut(s)	66, 449
SaqAI	TTAA	2 cut(s)	339, 375
SatI	GCNGC	6 cut(s)	121, 274, 390, 425, 542, 559
Sau3AI	GATC	8 cut(s)	346, 361, 367, 395, 478, 484, 524, 565
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	500, 528
ScrFI	CCNGG	2 cut(s)	439, 533
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	6 cut(s)	102, 108, 429, 461, 555, 574
SfaNI	GCATC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	66, 348
Sse9I	AATT	2 cut(s)	329, 646
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	6 cut(s)	40, 120, 214, 353, 390, 558
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	437, 531
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	102, 108
TaqI	TCGA	2 cut(s)	86, 285
TasI	AATT	2 cut(s)	329, 646
TauI	GCSGC	3 cut(s)	123, 392, 561
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	339, 375
Tru9I	TTAA	2 cut(s)	339, 375
TscAI	CASTG	3 cut(s)	192, 248, 568
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	3 cut(s)	273, 424, 541
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	50, 60, 84
TspGWI	ACGGA	3 cut(s)	162, 434, 628
TspRI	CASTG	3 cut(s)	192, 248, 568
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.