Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010643

Physical Location & Seq

Genomic Coordinates Reverse (-)

678157 .. 686017

Gene Structure 7861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2610 bp

ATGGAAGCCAGTGCCGGACTTGTTGCCGGTTCTCACAACCGGAATGAACTCGTCGTCATTCATGGTCACGAAGAGCACAAGCCTTTGAGGAACTTGGACGGCCAGGTTTGCGAGATATGTGGAGACGAGGTTGGACTGACGGTGGATGGAGACTTGTTTGTGGCTTGCAATGAGTGTGGATTCCCTGTGTGCAGGCCTTGCTATGAGTATGAGAGGAGAGAAGGCTCTCAGAACTGCCCTCAGTGCAAAACCAGGTACAAGCGTCTCAAAGGAAGCCCCAGGGTGGAGGGAGACGATGACGAAGAGGATGTGGATGATATTGAGCATGAATTTAACATGAATGAAGATGATCAACACAATAAGGGTATCAAAAACAATGAGCAAATCGCGGAAGCAATGCTCCATGGAAAGATGAGCTATGGAAGAGGACCAGATGATGAGGAGAATTCCCAATTCCCACCAGTTATTGCTGGTGTCAGATCCCGCCCGGTTAGCGGCGAGCTCACATACTTATCTCATGGTTATGGAGATAAGCCTTCTCCGTTGCATAAACGAGTTCATCCATATCCACCTTCTGAGCCTGGAAGTGAAAAATGGGATGAGAAGAAAGATGGAGGGTGGAAGGAAAGAATGGAAGATTGGAAATTGCAGCAAGGCAACTTGGGAGGGCCTGAACCTGATGACATGAACGACACAGACATGTCAATGATTGATGAAGCTAGGCAGCCACTGTCAAGGAAAGTATCAATTGCATCTAGCAAGATCAACCCTTATCGAATGATCATTGTGGCTCGGCTGTTTATTTTGGCTGCATTCCTCCGGTATAGACTCATGAATCCGGTTCATGATGCACTTGGTCTCTGGTTAACTTCTGTCATTTGTGAGATATGGTTTGCAATTTCATGGATCCTTGATCAGTTCCCTAAGTGGTACCCTATTGAGCGCGAGACCTACCTTGATCGCCTTTCACTAAGGTATGAGAGGGAGGGTGAACCAAATATGCTATCCCCAGTAGATGTATTTGTGAGTACTGTGGATCCCATGAAGGAACCTCCACTTAATACAGCAAATACAGTCCTTTCAATCTTGGCCATGGACTATCCTGTTGAAAAAATCTCATGCTACATTTCTGATGATGGAGCTTCCATGCTCACCTTTGAGGCCTTGTCTGAAACAGCAGAATTTGCAAGGAAATGGGTACCCTTTTGCAAGAAATTTTCTATTGAGCCTAGAGCCCCCGAGATGTACTTCTGTGAGAAGATTGATTACCTAAAGGACAAAGTTCAGCCAACATTTGTCAAGGAACGTCGAGCTATGAAGAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAAAGGTTCCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATGGCCTGGAAACAATACTAAGGACCACCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGCCTTGATACTGAAGGAAATGAGCTCCCTCGTCTTGTTTATGTGTCTCGTGAGAAGAGGCCAGGCTTTTCACATCACAAGAAGGCTGGTGCCATGAATGCCTTGGTCCGCGTCTCTGGAGTGCTCACCAATGCTCCTTTCATGCTCAACTTGGATTGTGATCATTATGTTAACAACAGTAAGGCTGCAAGAGAAGCCATGTGTTTCTTGATGGACCCTCAAATTGGAAGGAAAGTTTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGAAATGATCGTTATGCCAACAGGAACACAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTCCGGTGTATGTGGGCACAGGATGTGTTTTCAGAAGGCAAGCTTTGTATGGATATAATCCTCCAAGGGGTCCTAAGCGCCCAAAGATGGTAAGCTGTGACTGCTGCCCATGTTTTGGACGCCGCAAGAAGCTTCCAAAGTATTCCAAGAATGATGCAAATGGAGATGGTGCAAACCTCCAACTACAAGGAATGGATGATGACAAAGAGCTATTGATGTCCCAAATGAATTTTGAAAAGACATTCGGACAGTCAGCTATTTTCGTGACTTCAACTTTAATGGAACAAGGAGGTGTCCCTCCTTCCTCAAGCCCTGCTGCCATGCTTAAGGAAGCCATTCATGTTATCAGTTGTGGTTATGAAGACAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTACGGATCTATCACAGAGGATATCTTGACAGGGTTCAAAATGCATTGCCGTGGTTGGAGGTCTATTTACTGTATGCCAAAGAGACCTGCATTCAAGGGTACAGCACCCATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCGCCACAGTCCCCTCTTGTATGGCTACAAGGGAGGGAAGCTCAAGTGGCTTGAGAGATTCGCTTATGTCAACACTACTATCTACCCTTTCACCTCTCTTCCTCTTCTTGCCTATTGTATGCTCCCTGCCGTCTGCTTGCTCACCGATAAATTCATCATGCCACCGGTAACAATTTTTAGTAATATTTTACATTCAATCATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

869

Amino Acids

98.68

Weight (kDa)

6.12

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	27 - 104	1.3e-42	Zinc-binding RING-finger
Cellulose_synt	PF03552	338 - 864	4.3e-295	Cellulose synthase
Glyco_trans_2_3	PF13632	736 - 845	9.1e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17420
fragaria_vesca	FvH4_1g00670
malus_domestica	MD02G1005600.v1.1 MD15G1150200.v1.1 MD15G1150300.v1.1
prunus_persica	Prupe.7G265400_v2.0.a1
pyrus_communis	pycom02g00450 pycom15g13420 pycom15g13430 pycom15g13440
rosa_chinensis	RchiOBHm_Chr2g0085301 RchiOBHm_Chr2g0175181
rosa_laevigata	RLG00000015676
rosa_multiflora	Rmu_sc0008510.1_g000012
rosa_rugosa	Rorug01G0459400
rosa_samantha	Rh2AG007700 Rh2BG008400 Rh2CG009100 Rh2DG009600
rosa_wichuraiana	Rw2G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2320
Acc65I	GGTACC	2 cut(s)	930, 1198
AccB1I	GGYRCC	3 cut(s)	930, 1198, 1568
AccB7I	CCANNNNNTGG	2 cut(s)	1421, 1943
AccII	CGCG	3 cut(s)	389, 945, 1590
AciI	CCGC	5 cut(s)	389, 484, 495, 1588, 1951
AclWI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
AcoI	YGGCCR	3 cut(s)	100, 1089, 1362
AcsI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
AcuI	CTGAAG	2 cut(s)	1512, 2383
AcyI	GRCGYC	1 cut(s)	1948
AfaI	GTAC	6 cut(s)	257, 932, 1030, 1200, 1247, 2326
AfiI	CCNNNNNNNGG	8 cut(s)	283, 494, 1388, 1421, 1703, 1895, 1915, 1943
AflII	CTTAAG	1 cut(s)	2153
AflIII	ACRYGT	1 cut(s)	699
AgeI	ACCGGT	1 cut(s)	2566
AgsI	TTSAA	9 cut(s)	1083, 1109, 1339, 1826, 2063, 2100, 2263, 2320, 2598
AjnI	CCWGG	8 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358
AjuI	GAANNNNNNNTTGG	4 cut(s)	622, 654, 1601, 1633
Alw21I	GWGCWC	4 cut(s)	78, 504, 1506, 1605
Alw26I	GTCTC	9 cut(s)	117, 144, 269, 285, 863, 941, 1530, 1597, 2302
AlwI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
AlwNI	CAGNNNCTG	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	1238
AoxI	GGCC	9 cut(s)	100, 194, 668, 1089, 1161, 1362, 1418, 1480, 1538
ApeKI	GCWGC	6 cut(s)	649, 724, 809, 1664, 1932, 2144
ApoI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
AsiGI	ACCGGT	1 cut(s)	2566
Asp700I	GAANNNNTTC	1 cut(s)	2163
Asp718I	GGTACC	2 cut(s)	930, 1198
AspLEI	GCGC	3 cut(s)	945, 1357, 1908
AspS9I	GGNCC	7 cut(s)	428, 668, 1438, 1585, 1693, 1829, 1898
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	5 cut(s)	1001, 1144, 1597, 2485, 2536
AvaI	CYCGRG	1 cut(s)	1238
AvaII	GGWCC	6 cut(s)	428, 1438, 1585, 1693, 1829, 1898
BaeGI	GKGCMC	2 cut(s)	1847, 2377
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BalI	TGGCCA	2 cut(s)	1091, 1364
BamHI	GGATCC	2 cut(s)	906, 1036
BanI	GGYRCC	3 cut(s)	930, 1198, 1568
BanII	GRGCYC	3 cut(s)	504, 1237, 1506
BarI	GAAGNNNNNNTAC	2 cut(s)	1250, 1282
BauI	CACGAG	1 cut(s)	1527
BbsI	GAAGAC	2 cut(s)	1780, 2196
Bbv12I	GWGCWC	4 cut(s)	78, 504, 1506, 1605
BbvI	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BceAI	ACGGC	3 cut(s)	115, 2259, 2516
BciT130I	CCWGG	8 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360
BclI	TGATCA	4 cut(s)	349, 780, 913, 1639
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	9 cut(s)	117, 144, 269, 285, 863, 941, 1530, 1597, 2302
BfaI	CTAG	3 cut(s)	720, 756, 1230
BfoI	RGCGCY	1 cut(s)	1909
BfrI	CTTAAG	1 cut(s)	2153
BfuAI	ACCTGC	1 cut(s)	2320
BisI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
BlsI	GCNGC	8 cut(s)	497, 651, 726, 811, 1666, 1934, 1952, 2146
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	9 cut(s)	104, 253, 280, 488, 582, 1422, 1446, 1542, 2360
Bme18I	GGWCC	6 cut(s)	428, 1438, 1585, 1693, 1829, 1898
BmeT110I	CYCGRG	1 cut(s)	1238
BmgT120I	GGNCC	7 cut(s)	428, 668, 1438, 1585, 1693, 1829, 1898
BmrFI	CCNGG	9 cut(s)	104, 253, 280, 488, 582, 1422, 1446, 1542, 2360
BmrI	ACTGGG	1 cut(s)	1004
BmsI	GCATC	3 cut(s)	761, 838, 1972
BmuI	ACTGGG	1 cut(s)	1004
BpiI	GAAGAC	2 cut(s)	1780, 2196
BplI	GAGNNNNNCTC	2 cut(s)	2427, 2459
BpmI	CTGGAG	2 cut(s)	1368, 1617
Bpu10I	CCTNAGC	1 cut(s)	1902
BpuEI	CTTGAG	3 cut(s)	2119, 2429, 2474
BpuMI	CCSGG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaHI	GRCGYC	1 cut(s)	1948
BsaI	GGTCTC	3 cut(s)	863, 941, 2302
BsaJI	CCNNGG	9 cut(s)	278, 279, 403, 1092, 1415, 1444, 1581, 1892, 2275
BsaWI	WCCGGW	5 cut(s)	39, 819, 838, 1831, 2566
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 1597, 1627
Bsc4I	CCNNNNNNNGG	8 cut(s)	283, 494, 1388, 1421, 1703, 1895, 1915, 1943
Bse118I	RCCGGY	2 cut(s)	26, 2566
Bse1I	ACTGG	4 cut(s)	9, 461, 1010, 1726
Bse3DI	GCAATG	3 cut(s)	175, 402, 2269
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	8 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360
BseDI	CCNNGG	9 cut(s)	278, 279, 403, 1092, 1415, 1444, 1581, 1892, 2275
BseGI	GGATG	8 cut(s)	151, 313, 319, 559, 604, 1822, 1856, 2029
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	8 cut(s)	283, 494, 1388, 1421, 1703, 1895, 1915, 1943
BseMI	GCAATG	3 cut(s)	175, 402, 2269
BseMII	CTCAG	3 cut(s)	242, 254, 567
BseNI	ACTGG	4 cut(s)	9, 461, 1010, 1726
BseRI	GAGGAG	2 cut(s)	229, 455
BseSI	GKGCMC	2 cut(s)	1847, 2377
BseXI	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BseYI	CCCAGC	1 cut(s)	2215
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	3 cut(s)	389, 945, 1590
BshFI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BshNI	GGYRCC	3 cut(s)	930, 1198, 1568
BshTI	ACCGGT	1 cut(s)	2566
BsiHKAI	GWGCWC	4 cut(s)	78, 504, 1506, 1605
BsiHKCI	CYCGRG	1 cut(s)	1238
BsiSI	CCGG	8 cut(s)	15, 27, 40, 488, 820, 839, 1832, 2567
BslFI	GGGAC	4 cut(s)	1423, 2032, 2108, 2397
BslI	CCNNNNNNNGG	8 cut(s)	283, 494, 1388, 1421, 1703, 1895, 1915, 1943
BsmAI	GTCTC	9 cut(s)	117, 144, 269, 285, 863, 941, 1530, 1597, 2302
BsmBI	CGTCTC	4 cut(s)	117, 269, 285, 1597
BsmFI	GGGAC	4 cut(s)	1423, 2032, 2108, 2397
BsmI	GAATGC	3 cut(s)	812, 1582, 2315
BsnI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
Bso31I	GGTCTC	3 cut(s)	863, 941, 2302
BsoBI	CYCGRG	1 cut(s)	1238
Bsp1286I	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 2377
Bsp19I	CCATGG	3 cut(s)	403, 1092, 1415
BspACI	CCGC	5 cut(s)	389, 484, 495, 1588, 1951
BspANI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BspCNI	CTCAG	3 cut(s)	241, 253, 568
BspFNI	CGCG	3 cut(s)	389, 945, 1590
BspHI	TCATGA	2 cut(s)	831, 844
BspMI	ACCTGC	1 cut(s)	2320
BspPI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	3 cut(s)	930, 1198, 1568
BspTI	CTTAAG	1 cut(s)	2153
BspTNI	GGTCTC	3 cut(s)	863, 941, 2302
BsrDI	GCAATG	3 cut(s)	175, 402, 2269
BsrFI	RCCGGY	2 cut(s)	26, 2566
BsrI	ACTGG	4 cut(s)	9, 461, 1010, 1726
BssAI	RCCGGY	2 cut(s)	26, 2566
BssECI	CCNNGG	9 cut(s)	278, 279, 403, 1092, 1415, 1444, 1581, 1892, 2275
BssNI	GRCGYC	1 cut(s)	1948
BssSI	CACGAG	1 cut(s)	1527
BssT1I	CCWWGG	5 cut(s)	403, 1092, 1415, 1581, 1892
Bst2BI	CACGAG	1 cut(s)	1527
Bst2UI	CCWGG	8 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360
Bst6I	CTCTTC	8 cut(s)	66, 297, 418, 1313, 1326, 1529, 2505, 2511
BstACI	GRCGYC	1 cut(s)	1948
BstAFI	CTTAAG	1 cut(s)	2153
BstAPI	GCANNNNNTGC	2 cut(s)	198, 1184
BstC8I	GCNNGC	5 cut(s)	166, 194, 500, 1869, 2540
BstDEI	CTNAG	7 cut(s)	228, 240, 576, 924, 971, 1434, 1902
BstDSI	CCRYGG	4 cut(s)	403, 1092, 1415, 2275
BstENI	CCTNNNNNAGG	1 cut(s)	1386
BstF5I	GGATG	8 cut(s)	151, 313, 319, 559, 604, 1822, 1856, 2029
BstFNI	CGCG	3 cut(s)	389, 945, 1590
BstH2I	RGCGCY	1 cut(s)	1909
BstHHI	GCGC	3 cut(s)	945, 1357, 1908
BstMAI	GTCTC	9 cut(s)	117, 144, 269, 285, 863, 941, 1530, 1597, 2302
BstNI	CCWGG	8 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	9 cut(s)	102, 251, 278, 486, 580, 1420, 1444, 1540, 2358
BstSLI	GKGCMC	2 cut(s)	1847, 2377
BstUI	CGCG	3 cut(s)	389, 945, 1590
BstV1I	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BstV2I	GAAGAC	2 cut(s)	1780, 2196
BstX2I	RGATCY	4 cut(s)	479, 906, 1036, 2231
BstXI	CCANNNNNNTGG	1 cut(s)	1392
BstYI	RGATCY	4 cut(s)	479, 906, 1036, 2231
BsuRI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BtgI	CCRYGG	4 cut(s)	403, 1092, 1415, 2275
BtsCI	GGATG	8 cut(s)	151, 313, 319, 559, 604, 1822, 1856, 2029
BtsIMutI	CAGTG	4 cut(s)	16, 248, 728, 1480
BveI	ACCTGC	1 cut(s)	2320
Cac8I	GCNNGC	5 cut(s)	166, 194, 500, 1869, 2540
CaiI	CAGNNNCTG	1 cut(s)	730
CciI	TCATGA	2 cut(s)	831, 844
CfoI	GCGC	3 cut(s)	945, 1357, 1908
Cfr10I	RCCGGY	2 cut(s)	26, 2566
Cfr13I	GGNCC	7 cut(s)	428, 668, 1438, 1585, 1693, 1829, 1898
CseI	GACGC	3 cut(s)	251, 1579, 1956
CsiI	ACCWGGT	2 cut(s)	251, 2358
Csp6I	GTAC	6 cut(s)	256, 931, 1029, 1199, 1246, 2325
CspAI	ACCGGT	1 cut(s)	2566
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviQI	GTAC	6 cut(s)	256, 931, 1029, 1199, 1246, 2325
DdeI	CTNAG	7 cut(s)	228, 240, 576, 924, 971, 1434, 1902
EaeI	YGGCCR	3 cut(s)	100, 1089, 1362
Eam1104I	CTCTTC	8 cut(s)	66, 297, 418, 1313, 1326, 1529, 2505, 2511
EarI	CTCTTC	8 cut(s)	66, 297, 418, 1313, 1326, 1529, 2505, 2511
Ecl136II	GAGCTC	2 cut(s)	502, 1504
Eco130I	CCWWGG	5 cut(s)	403, 1092, 1415, 1581, 1892
Eco147I	AGGCCT	3 cut(s)	196, 1163, 1482
Eco24I	GRGCYC	3 cut(s)	504, 1237, 1506
Eco31I	GGTCTC	3 cut(s)	863, 941, 2302
Eco32I	GATATC	1 cut(s)	2248
Eco47I	GGWCC	6 cut(s)	428, 1438, 1585, 1693, 1829, 1898
Eco53kI	GAGCTC	2 cut(s)	502, 1504
Eco57I	CTGAAG	2 cut(s)	1512, 2383
Eco88I	CYCGRG	1 cut(s)	1238
EcoICRI	GAGCTC	2 cut(s)	502, 1504
EcoNI	CCTNNNNNAGG	1 cut(s)	1386
EcoO109I	RGGNCCY	2 cut(s)	668, 1898
EcoRI	GAATTC	2 cut(s)	445, 1821
EcoRII	CCWGG	8 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358
EcoRV	GATATC	1 cut(s)	2248
EcoT14I	CCWWGG	5 cut(s)	403, 1092, 1415, 1581, 1892
EcoT22I	ATGCAT	1 cut(s)	2271
EcoT38I	GRGCYC	3 cut(s)	504, 1237, 1506
ErhI	CCWWGG	5 cut(s)	403, 1092, 1415, 1581, 1892
Esp3I	CGTCTC	4 cut(s)	117, 269, 285, 1597
FalI	AAGNNNNNCTT	2 cut(s)	1855, 1887
FaqI	GGGAC	4 cut(s)	1423, 2032, 2108, 2397
FauI	CCCGC	1 cut(s)	491
FbaI	TGATCA	4 cut(s)	349, 780, 913, 1639
Fnu4HI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
FokI	GGATG	8 cut(s)	158, 320, 326, 546, 611, 1829, 1863, 2036
FriOI	GRGCYC	3 cut(s)	504, 1237, 1506
Fsp4HI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
FspBI	CTAG	3 cut(s)	720, 756, 1230
GlaI	GCGC	3 cut(s)	944, 1356, 1907
GluI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
GsaI	CCCAGC	1 cut(s)	2219
GsuI	CTGGAG	2 cut(s)	1368, 1617
HaeII	RGCGCY	1 cut(s)	1909
HaeIII	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
HapII	CCGG	8 cut(s)	15, 27, 40, 488, 820, 839, 1832, 2567
HgaI	GACGC	3 cut(s)	251, 1579, 1956
HhaI	GCGC	3 cut(s)	945, 1357, 1908
Hin1I	GRCGYC	1 cut(s)	1948
Hin6I	GCGC	3 cut(s)	943, 1355, 1906
HinP1I	GCGC	3 cut(s)	943, 1355, 1906
HincII	GTYRAC	3 cut(s)	867, 1651, 2473
HindII	GTYRAC	3 cut(s)	867, 1651, 2473
HindIII	AAGCTT	2 cut(s)	1869, 1958
HinfI	GANTC	5 cut(s)	180, 828, 835, 1453, 2460
HpaI	GTTAAC	2 cut(s)	867, 1651
HpaII	CCGG	8 cut(s)	15, 27, 40, 488, 820, 839, 1832, 2567
HphI	GGTGA	5 cut(s)	1001, 1144, 1597, 2485, 2536
Hpy166II	GTNNAC	4 cut(s)	867, 992, 1651, 2473
Hpy188I	TCNGA	8 cut(s)	231, 479, 577, 1132, 1171, 1862, 2075, 2347
Hpy8I	GTNNAC	4 cut(s)	867, 992, 1651, 2473
Hpy99I	CGWCG	2 cut(s)	56, 1311
HpyCH4IV	ACGT	1 cut(s)	1306
HpyF3I	CTNAG	7 cut(s)	228, 240, 576, 924, 971, 1434, 1902
HpySE526I	ACGT	1 cut(s)	1306
Hsp92I	GRCGYC	1 cut(s)	1948
HspAI	GCGC	3 cut(s)	943, 1355, 1906
KpnI	GGTACC	2 cut(s)	934, 1202
Ksp22I	TGATCA	4 cut(s)	349, 780, 913, 1639
KspAI	GTTAAC	2 cut(s)	867, 1651
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	5 cut(s)	405, 1139, 1509, 1618, 2529
Lsp1109I	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
LweI	GCATC	3 cut(s)	761, 838, 1972
MabI	ACCWGGT	2 cut(s)	251, 2358
MaeI	CTAG	3 cut(s)	720, 756, 1230
MaeII	ACGT	1 cut(s)	1306
MaeIII	GTNAC	5 cut(s)	65, 1469, 1925, 2092, 2569
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	4 cut(s)	479, 906, 1036, 2231
MhlI	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 2377
MlsI	TGGCCA	2 cut(s)	1091, 1364
MluNI	TGGCCA	2 cut(s)	1091, 1364
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	4 cut(s)	112, 2032, 2201, 2261
Mox20I	TGGCCA	2 cut(s)	1091, 1364
Mph1103I	ATGCAT	1 cut(s)	2271
MroXI	GAANNNNTTC	1 cut(s)	2163
MscI	TGGCCA	2 cut(s)	1091, 1364
MseI	TTAA	7 cut(s)	333, 866, 1059, 1650, 1800, 2105, 2154
MslI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
Msp20I	TGGCCA	2 cut(s)	1091, 1364
MspCI	CTTAAG	1 cut(s)	2153
MspI	CCGG	8 cut(s)	15, 27, 40, 488, 820, 839, 1832, 2567
MspR9I	CCNGG	9 cut(s)	104, 253, 280, 488, 582, 1422, 1446, 1542, 2360
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	3 cut(s)	812, 1582, 2315
MvaI	CCWGG	8 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360
MvnI	CGCG	3 cut(s)	389, 945, 1590
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	3 cut(s)	403, 1092, 1415
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	4 cut(s)	65, 1469, 1925, 2092
NsiI	ATGCAT	1 cut(s)	2271
NspI	RCATGY	1 cut(s)	703
PagI	TCATGA	2 cut(s)	831, 844
PasI	CCCWGGG	1 cut(s)	279
PceI	AGGCCT	3 cut(s)	196, 1163, 1482
PciI	ACATGT	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	66
PctI	GAATGC	3 cut(s)	812, 1582, 2315
PdmI	GAANNNNTTC	1 cut(s)	2163
PfeI	GAWTC	4 cut(s)	180, 835, 1453, 2460
PflMI	CCANNNNNTGG	2 cut(s)	1421, 1943
PinAI	ACCGGT	1 cut(s)	2566
PkrI	GCNGC	8 cut(s)	497, 651, 726, 811, 1666, 1934, 1952, 2146
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PpuMI	RGGWCCY	1 cut(s)	1898
PscI	ACATGT	1 cut(s)	699
Psp124BI	GAGCTC	2 cut(s)	504, 1506
Psp5II	RGGWCCY	1 cut(s)	1898
Psp6I	CCWGG	8 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358
PspFI	CCCAGC	1 cut(s)	2215
PspGI	CCWGG	8 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358
PspPI	GGNCC	7 cut(s)	428, 668, 1438, 1585, 1693, 1829, 1898
PspPPI	RGGWCCY	1 cut(s)	1898
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	4 cut(s)	479, 906, 1036, 2231
RsaI	GTAC	6 cut(s)	257, 932, 1030, 1200, 1247, 2326
RsaNI	GTAC	6 cut(s)	256, 931, 1029, 1199, 1246, 2325
RseI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
SacI	GAGCTC	2 cut(s)	504, 1506
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	7 cut(s)	333, 866, 1059, 1650, 1800, 2105, 2154
SatI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
Sau96I	GGNCC	7 cut(s)	428, 668, 1438, 1585, 1693, 1829, 1898
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	9 cut(s)	104, 253, 280, 488, 582, 1422, 1446, 1542, 2360
SduI	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 2377
SexAI	ACCWGGT	2 cut(s)	251, 2358
SfaNI	GCATC	3 cut(s)	761, 838, 1972
SinI	GGWCC	6 cut(s)	428, 1438, 1585, 1693, 1829, 1898
SmiMI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
SmlI	CTYRAG	4 cut(s)	2134, 2153, 2444, 2453
SmoI	CTYRAG	4 cut(s)	2134, 2153, 2444, 2453
SseBI	AGGCCT	3 cut(s)	196, 1163, 1482
SsiI	CCGC	5 cut(s)	389, 484, 495, 1588, 1951
SspI	AATATT	1 cut(s)	2587
SspMI	CTAG	3 cut(s)	720, 756, 1230
SstI	GAGCTC	2 cut(s)	504, 1506
StuI	AGGCCT	3 cut(s)	196, 1163, 1482
StyD4I	CCNGG	9 cut(s)	102, 251, 278, 486, 580, 1420, 1444, 1540, 2358
StyI	CCWWGG	5 cut(s)	403, 1092, 1415, 1581, 1892
TaiI	ACGT	1 cut(s)	1309
TaqI	TCGA	2 cut(s)	775, 1309
TatI	WGTACW	2 cut(s)	1028, 1245
TauI	GCSGC	2 cut(s)	498, 1953
TfiI	GAWTC	4 cut(s)	180, 835, 1453, 2460
Tru1I	TTAA	7 cut(s)	333, 866, 1059, 1650, 1800, 2105, 2154
Tru9I	TTAA	7 cut(s)	333, 866, 1059, 1650, 1800, 2105, 2154
TscAI	CASTG	4 cut(s)	16, 248, 735, 1480
TseFI	GTSAC	4 cut(s)	65, 1469, 1925, 2092
TseI	GCWGC	6 cut(s)	649, 724, 809, 1664, 1932, 2144
Tsp45I	GTSAC	4 cut(s)	65, 1469, 1925, 2092
TspGWI	ACGGA	2 cut(s)	531, 2244
TspRI	CASTG	4 cut(s)	16, 248, 735, 1480
Van91I	CCANNNNNTGG	2 cut(s)	1421, 1943
Vha464I	CTTAAG	1 cut(s)	2153
VpaK11BI	GGWCC	6 cut(s)	428, 1438, 1585, 1693, 1829, 1898
XagI	CCTNNNNNAGG	1 cut(s)	1386
XapI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1579
XmnI	GAANNNNTTC	1 cut(s)	2163
XspI	CTAG	3 cut(s)	720, 756, 1230
ZrmI	AGTACT	1 cut(s)	1030
Zsp2I	ATGCAT	1 cut(s)	2271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.