Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010643

Physical Location & Seq

Genomic Coordinates Reverse (-)

605217 .. 610005

Gene Structure 4789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3150 bp

ATGGAAGCCAGTGCCGGACTTGTTGCCGGTTCTCACAACCGGAATGAACTCGTAGTCATTCATGGTCACGAAGAGCACAAGCCTTTGAGGAACTTGGACGGCCAGGTTTGCGAGATATGTGGAGACGAGGTTGGACTGACGGTGGATGGAGACTTGTTTGTGGCTTGCAATGAGTGTGGATTCCCTGTGTGCAGGCCTTGCTATGAGTATGAGAGGAGAGAAGGCTCTCAGAACTGCCCTCAGTGCAAAACCAGGTACAAGCGTCTCAAAGGAAGCCCCAGGGTGGAGGGAGACGATGACGAAGAGGATGTGGATGATATTGAGCATGAATTTAACATGAATGAAGATGATCAACACAATAAGGGTATCAAAAACAATGAGCAAATCGCGGAAGCAATGCTCCATGGAAAGATGAGCTATGGAAGAGGACCAGATGATGAGGAGAATTCCCAATTCCCACCAGTTATTGCTGGTGTCAGATCCCGCCCGGTTAGCGGCGAGCTCACATACTTATCTCATGGTTATGGAGATAAGCCTTCTCCGTTGCATAAACGAGTTCATCCATATCCACCTTCTGAGCCTGGAAGTGAAAAATGGGATGAGAAGAAAGATGGAGGGTGGAAGGAAAGAATGGATGATTGGAAATTGCAGCAAGGCAACTTGGGAGGGCCTGAACCTGATGACATGAACGACACAGACATGTCAATGATTGATGAAGCTAGGCAGCCACTGTCAAGGAAAGTATCAATTGCATCTAGCAAGATCAACCCTTATCGAATGATCATTGTGGCTCGGCTGTTTATTTTGGCTGCATTCCTCCGGTATAGACTCATGAATCCGGTTCATGATGCACTTGGTCTCTGGTTAACTTCTGTCATTTGTGAGATATGGTTTGCAATTTCATGGATCCTTGATCAGTTCCCTAAGTGGTACCCTATTGAGCGCGAGACCTACCTTGATCGCCTTTCACTAAGGTATGAGAGGGAGGGTGAACCAAATATGCTATCCCCAGTAGATGTATTTGTGAGTACTGTGGATCCCATGAAGGAACCTCCACTTAATACAGCAAATACAGTCCTTTCAATCTTGGCCATGGACTATCCTGTTGAAAAAATCTCATGCTACATTTCTGATGATGGAGCTTCCATGCTCACCTTTGAGGCCTTGTCTGAAACAGCAGAATTTGCAAGGAAATGGGTACCCTTTTGCAAGAAATTTTCTATTGAGCCTAGAGCCCCCGAGATGTACTTCTGTGAGAAGATTGATTACCTAAAGGACAAAGTTCAGCCAACATTTGTCAAGGAACGTCGAGCTATGAAGAGAGAATATGAAGAGTTCAAGGTTAGGATAAATGCGCTTGTGGCCAAAGCCACAAAGGTTCCTCCAGAAGGGTGGATTATGCAAGATGGGACACCATGGCCTGGAAACAATACTAAGGACCACCCTGGTATGATTCAGGTCTTTCTTGGTCACAGTGGAGGCCTTGATACTGAAGGAAATGAGCTCCCTCGTCTTGTTTATGTGTCTCGTGAGAAGAGGCCAGGCTTTTCACATCACAAGAAGGCTGGTGCCATGAATGCCTTGGTCCGCGTCTCTGGAGTGCTCACCAATGCTCCTTTCATGCTCAACTTGGATTGTGATCATTATGTTAACAACAGTAAGGCTGCAAGAGAAGCCATGTGTTTCTTGATGGACCCTCAAATTGGAAGGAAAGTTTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGAAATGATCGTTATGCCAACAGGAACACAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTCCGGTGTATGTGGGCACAGGATGTGTTTTCAGAAGGCAAGCTTTGTATGGATATAATCCTCCAAGGGGTCCTAAGCGCCCAAAGATGGTAAGCTGTGACTGCTGCCCATGTTTTGGACGCCGCAAGAAGCTTCCAAAGTATTCCAAGAATGATGCAAATGGAGATGGTGCAAACCTCCAACTACAAGGAATGGATGATGACAAAGAGCTATTGATGTCCCAAATGAATTTTGAAAAGACATTCGGACAGTCAGCTATTTTCGTGACTTCAACTTTAATGGAACAAGGAGGTGTCCCTCCTTCCTCAAGCCCTGCTGCCATGCTTAAGGAAGCCATTCATGTTATCAGTTGTGGTTATGAAGACAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTACGGATCTATCACAGAGGATATCTTGACAGGGTTCAAAATGCATTGCCGTGGTTGGAGGTCTATTTACTGTATGCCAAAGAGACCTGCATTCAAGGGTACAGCACCCATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCGCTTGGTTCCATTGAGATTTTCTTCAGTCGCCACAGTCCCCTCTTGTATGGCTACAAGGGAGGGAAGCTCAAGTGGCTTGAGAGATTCGCTTATGTCAACACTACTATCTACCCTTTCACCTCTCTTCCTCTTCTTGCCTATTGTATGCTCCCTGCCGTCTGCTTGCTCACCGATAAATTCATCATGCCACCGATAAGCACTTTCGCAAGTCTCTTCTTCATTGCTCTGTTCCTTTCAATCTTTGGTACTGGCATTCTTGAGCTGAGATGGAGTGGAGTGAGTATTGAAGAATGGTGGAGAAATGAGCAATTCTGGGTGATTGGCGGTGTGTCAGCTCACCTCTACGCTGTTATCCAAGGTCTTCTGAAGGTCTTGGCTGGAATTGACACCAGCTTCACTGTCACAGCCAAGTCTGCAGATGATGAGGATTTTGGAGAGTTGTACGCCTTTAAATGGACAACTCTCCTAATCCCTCCAACCACTATCTTAATCATTAACCTTGTTGGAGTAGTTGCTGGGATTTCAGATGCCATAAACAATGGGTACGAATCATGGGGACCTCTATTTGGAAAGCTCTTCTTTGCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTCTGATGGGGAGGCAGAACCGTACGCCAACAATTGTTGTCATATGGTCCGTGCTCCTGGCTTCTATTTTCTCCTTACTCTGGGTTCGAATCGACCCATTTGTGTTGAAAACCAAGGGACCTACCACAAAGCAATGTGGAATCAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009664 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0010330 GO:0010393 GO:0010395 GO:0010400 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0017144 GO:0022402 GO:0030243 GO:0030244 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0052546 GO:0061640 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1049

Amino Acids

118.71

Weight (kDa)

6.22

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	27 - 104	1.7e-42	Zinc-binding RING-finger
Cellulose_synt	PF03552	338 - 1043	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	736 - 845	6.4e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17420
fragaria_vesca	FvH4_1g00670
malus_domestica	MD02G1005600.v1.1 MD15G1150200.v1.1 MD15G1150300.v1.1
prunus_persica	Prupe.7G265400_v2.0.a1
pyrus_communis	pycom02g00450 pycom15g13420 pycom15g13430 pycom15g13440
rosa_chinensis	RchiOBHm_Chr2g0085301 RchiOBHm_Chr2g0175181
rosa_laevigata	RLG00000015676
rosa_multiflora	Rmu_sc0008510.1_g000012
rosa_rugosa	Rorug01G0459400
rosa_samantha	Rh2AG007700 Rh2BG008400 Rh2CG009100 Rh2DG009600
rosa_wichuraiana	Rw2G000740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2320
Acc65I	GGTACC	2 cut(s)	930, 1198
AccB1I	GGYRCC	3 cut(s)	930, 1198, 1568
AccB7I	CCANNNNNTGG	2 cut(s)	1421, 1943
AccII	CGCG	3 cut(s)	389, 945, 1590
AciI	CCGC	6 cut(s)	389, 484, 495, 1588, 1951, 2700
AclWI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
AcoI	YGGCCR	3 cut(s)	100, 1089, 1362
AcsI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
AcuI	CTGAAG	3 cut(s)	1512, 2383, 2762
AcyI	GRCGYC	1 cut(s)	1948
AflII	CTTAAG	1 cut(s)	2153
AflIII	ACRYGT	1 cut(s)	699
AjnI	CCWGG	9 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358, 3054
AjuI	GAANNNNNNNTTGG	4 cut(s)	622, 654, 1601, 1633
Alw21I	GWGCWC	5 cut(s)	78, 504, 1506, 1605, 3054
AlwI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
AlwNI	CAGNNNCTG	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	1238
AoxI	GGCC	9 cut(s)	100, 194, 668, 1089, 1161, 1362, 1418, 1480, 1538
ApeKI	GCWGC	6 cut(s)	649, 724, 809, 1664, 1932, 2144
ApoI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
Asp700I	GAANNNNTTC	1 cut(s)	2163
Asp718I	GGTACC	2 cut(s)	930, 1198
AspLEI	GCGC	4 cut(s)	945, 1357, 1908, 2377
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	8 cut(s)	1001, 1144, 1597, 2485, 2536, 2704, 2705, 2980
AsuII	TTCGAA	1 cut(s)	3085
AvaI	CYCGRG	1 cut(s)	1238
AvaII	GGWCC	9 cut(s)	428, 1438, 1585, 1693, 1829, 1898, 2933, 3045, 3116
BaeGI	GKGCMC	1 cut(s)	1847
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BalI	TGGCCA	2 cut(s)	1091, 1364
BamHI	GGATCC	2 cut(s)	906, 1036
BanI	GGYRCC	3 cut(s)	930, 1198, 1568
BanII	GRGCYC	3 cut(s)	504, 1237, 1506
BarI	GAAGNNNNNNTAC	2 cut(s)	1250, 1282
BauI	CACGAG	1 cut(s)	1527
BbsI	GAAGAC	3 cut(s)	1780, 2196, 2729
Bbv12I	GWGCWC	5 cut(s)	78, 504, 1506, 1605, 3054
BbvI	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BceAI	ACGGC	3 cut(s)	115, 2259, 2516
BciT130I	CCWGG	9 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360, 3056
BclI	TGATCA	4 cut(s)	349, 780, 913, 1639
BcnI	CCSGG	1 cut(s)	488
BfaI	CTAG	3 cut(s)	720, 756, 1230
BfmI	CTRYAG	1 cut(s)	2790
BfoI	RGCGCY	2 cut(s)	1909, 2378
BfrI	CTTAAG	1 cut(s)	2153
BfuAI	ACCTGC	1 cut(s)	2320
BisI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
BlsI	GCNGC	8 cut(s)	497, 651, 726, 811, 1666, 1934, 1952, 2146
BmcAI	AGTACT	1 cut(s)	1030
Bme18I	GGWCC	9 cut(s)	428, 1438, 1585, 1693, 1829, 1898, 2933, 3045, 3116
BmeT110I	CYCGRG	1 cut(s)	1238
BmrI	ACTGGG	1 cut(s)	1004
BmsI	GCATC	4 cut(s)	761, 838, 1972, 2893
BmuI	ACTGGG	1 cut(s)	1004
BpiI	GAAGAC	3 cut(s)	1780, 2196, 2729
BplI	GAGNNNNNCTC	2 cut(s)	2427, 2459
BpmI	CTGGAG	2 cut(s)	1368, 1617
Bpu10I	CCTNAGC	1 cut(s)	1902
Bpu14I	TTCGAA	1 cut(s)	3085
BpuEI	CTTGAG	4 cut(s)	2119, 2429, 2474, 2654
BpuMI	CCSGG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaHI	GRCGYC	1 cut(s)	1948
BsaI	GGTCTC	3 cut(s)	863, 941, 2302
BsaWI	WCCGGW	4 cut(s)	39, 819, 838, 1831
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 1597, 1627
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	5 cut(s)	9, 461, 1010, 1726, 2629
Bse3DI	GCAATG	5 cut(s)	175, 402, 2269, 2595, 3137
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	9 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360, 3056
BseGI	GGATG	9 cut(s)	151, 313, 319, 559, 604, 640, 1822, 1856, 2029
BseJI	GATNNNNATC	1 cut(s)	1638
BseMI	GCAATG	5 cut(s)	175, 402, 2269, 2595, 3137
BseMII	CTCAG	4 cut(s)	242, 254, 567, 2630
BseNI	ACTGG	5 cut(s)	9, 461, 1010, 1726, 2629
BseRI	GAGGAG	2 cut(s)	229, 455
BseSI	GKGCMC	1 cut(s)	1847
BseXI	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BseYI	CCCAGC	2 cut(s)	2215, 2891
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	3 cut(s)	389, 945, 1590
BshFI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BshNI	GGYRCC	3 cut(s)	930, 1198, 1568
BsiHKAI	GWGCWC	5 cut(s)	78, 504, 1506, 1605, 3054
BsiHKCI	CYCGRG	1 cut(s)	1238
BsiSI	CCGG	7 cut(s)	15, 27, 40, 488, 820, 839, 1832
BsiWI	CGTACG	1 cut(s)	3020
BslFI	GGGAC	6 cut(s)	1423, 2032, 2108, 2397, 2946, 3129
BsmBI	CGTCTC	4 cut(s)	117, 269, 285, 1597
BsmFI	GGGAC	6 cut(s)	1423, 2032, 2108, 2397, 2946, 3129
BsmI	GAATGC	4 cut(s)	812, 1582, 2315, 2628
BsnI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
Bso31I	GGTCTC	3 cut(s)	863, 941, 2302
BsoBI	CYCGRG	1 cut(s)	1238
Bsp119I	TTCGAA	1 cut(s)	3085
Bsp1286I	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 3054
Bsp19I	CCATGG	3 cut(s)	403, 1092, 1415
BspACI	CCGC	6 cut(s)	389, 484, 495, 1588, 1951, 2700
BspANI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BspCNI	CTCAG	4 cut(s)	241, 253, 568, 2631
BspFNI	CGCG	3 cut(s)	389, 945, 1590
BspHI	TCATGA	2 cut(s)	831, 844
BspMAI	CTGCAG	1 cut(s)	2794
BspMI	ACCTGC	1 cut(s)	2320
BspPI	GGATC	6 cut(s)	474, 901, 914, 1031, 1044, 2239
BspQI	GCTCTTC	2 cut(s)	66, 2957
BspT104I	TTCGAA	1 cut(s)	3085
BspT107I	GGYRCC	3 cut(s)	930, 1198, 1568
BspTI	CTTAAG	1 cut(s)	2153
BspTNI	GGTCTC	3 cut(s)	863, 941, 2302
BsrDI	GCAATG	5 cut(s)	175, 402, 2269, 2595, 3137
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	5 cut(s)	9, 461, 1010, 1726, 2629
BssAI	RCCGGY	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	1948
BssSI	CACGAG	1 cut(s)	1527
BssT1I	CCWWGG	7 cut(s)	403, 1092, 1415, 1581, 1892, 2731, 3111
Bst2BI	CACGAG	1 cut(s)	1527
Bst2UI	CCWGG	9 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360, 3056
BstACI	GRCGYC	1 cut(s)	1948
BstAFI	CTTAAG	1 cut(s)	2153
BstAPI	GCANNNNNTGC	2 cut(s)	198, 1184
BstBI	TTCGAA	1 cut(s)	3085
BstC8I	GCNNGC	5 cut(s)	166, 194, 500, 1869, 2540
BstDEI	CTNAG	8 cut(s)	228, 240, 576, 924, 971, 1434, 1902, 2639
BstDSI	CCRYGG	4 cut(s)	403, 1092, 1415, 2275
BstENI	CCTNNNNNAGG	1 cut(s)	1386
BstF5I	GGATG	9 cut(s)	151, 313, 319, 559, 604, 640, 1822, 1856, 2029
BstFNI	CGCG	3 cut(s)	389, 945, 1590
BstH2I	RGCGCY	2 cut(s)	1909, 2378
BstHHI	GCGC	4 cut(s)	945, 1357, 1908, 2377
BstNI	CCWGG	9 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360, 3056
BstNSI	RCATGY	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	2790
BstSLI	GKGCMC	1 cut(s)	1847
BstUI	CGCG	3 cut(s)	389, 945, 1590
BstV1I	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
BstV2I	GAAGAC	3 cut(s)	1780, 2196, 2729
BstX2I	RGATCY	4 cut(s)	479, 906, 1036, 2231
BstXI	CCANNNNNNTGG	1 cut(s)	1392
BstYI	RGATCY	4 cut(s)	479, 906, 1036, 2231
BsuRI	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
BtgI	CCRYGG	4 cut(s)	403, 1092, 1415, 2275
BtsCI	GGATG	9 cut(s)	151, 313, 319, 559, 604, 640, 1822, 1856, 2029
BtsIMutI	CAGTG	5 cut(s)	16, 248, 728, 1480, 2772
BveI	ACCTGC	1 cut(s)	2320
Cac8I	GCNNGC	5 cut(s)	166, 194, 500, 1869, 2540
CaiI	CAGNNNCTG	1 cut(s)	730
CciI	TCATGA	2 cut(s)	831, 844
CfoI	GCGC	4 cut(s)	945, 1357, 1908, 2377
Cfr10I	RCCGGY	1 cut(s)	26
CseI	GACGC	3 cut(s)	251, 1579, 1956
CsiI	ACCWGGT	2 cut(s)	251, 2358
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
DdeI	CTNAG	8 cut(s)	228, 240, 576, 924, 971, 1434, 1902, 2639
DraI	TTTAAA	1 cut(s)	2827
EaeI	YGGCCR	3 cut(s)	100, 1089, 1362
Ecl136II	GAGCTC	2 cut(s)	502, 1504
Eco130I	CCWWGG	7 cut(s)	403, 1092, 1415, 1581, 1892, 2731, 3111
Eco147I	AGGCCT	3 cut(s)	196, 1163, 1482
Eco24I	GRGCYC	3 cut(s)	504, 1237, 1506
Eco31I	GGTCTC	3 cut(s)	863, 941, 2302
Eco32I	GATATC	1 cut(s)	2248
Eco47I	GGWCC	9 cut(s)	428, 1438, 1585, 1693, 1829, 1898, 2933, 3045, 3116
Eco53kI	GAGCTC	2 cut(s)	502, 1504
Eco57I	CTGAAG	3 cut(s)	1512, 2383, 2762
Eco88I	CYCGRG	1 cut(s)	1238
EcoICRI	GAGCTC	2 cut(s)	502, 1504
EcoNI	CCTNNNNNAGG	1 cut(s)	1386
EcoO109I	RGGNCCY	4 cut(s)	668, 1898, 2933, 3116
EcoRI	GAATTC	2 cut(s)	445, 1821
EcoRII	CCWGG	9 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358, 3054
EcoRV	GATATC	1 cut(s)	2248
EcoT14I	CCWWGG	7 cut(s)	403, 1092, 1415, 1581, 1892, 2731, 3111
EcoT22I	ATGCAT	1 cut(s)	2271
EcoT38I	GRGCYC	3 cut(s)	504, 1237, 1506
ErhI	CCWWGG	7 cut(s)	403, 1092, 1415, 1581, 1892, 2731, 3111
Esp3I	CGTCTC	4 cut(s)	117, 269, 285, 1597
FalI	AAGNNNNNCTT	4 cut(s)	1855, 1887, 2939, 2971
FaqI	GGGAC	6 cut(s)	1423, 2032, 2108, 2397, 2946, 3129
FauI	CCCGC	1 cut(s)	491
FauNDI	CATATG	1 cut(s)	3041
FbaI	TGATCA	4 cut(s)	349, 780, 913, 1639
Fnu4HI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
FokI	GGATG	9 cut(s)	158, 320, 326, 546, 611, 647, 1829, 1863, 2036
FriOI	GRGCYC	3 cut(s)	504, 1237, 1506
Fsp4HI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
FspBI	CTAG	3 cut(s)	720, 756, 1230
GlaI	GCGC	4 cut(s)	944, 1356, 1907, 2376
GluI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
GsaI	CCCAGC	2 cut(s)	2219, 2895
GsuI	CTGGAG	2 cut(s)	1368, 1617
HaeII	RGCGCY	2 cut(s)	1909, 2378
HaeIII	GGCC	9 cut(s)	102, 196, 670, 1091, 1163, 1364, 1420, 1482, 1540
HapII	CCGG	7 cut(s)	15, 27, 40, 488, 820, 839, 1832
HgaI	GACGC	3 cut(s)	251, 1579, 1956
HhaI	GCGC	4 cut(s)	945, 1357, 1908, 2377
Hin1I	GRCGYC	1 cut(s)	1948
Hin6I	GCGC	4 cut(s)	943, 1355, 1906, 2375
HinP1I	GCGC	4 cut(s)	943, 1355, 1906, 2375
HincII	GTYRAC	3 cut(s)	867, 1651, 2473
HindII	GTYRAC	3 cut(s)	867, 1651, 2473
HindIII	AAGCTT	2 cut(s)	1869, 1958
HinfI	GANTC	8 cut(s)	180, 828, 835, 1453, 2460, 2924, 3087, 3138
HpaI	GTTAAC	2 cut(s)	867, 1651
HpaII	CCGG	7 cut(s)	15, 27, 40, 488, 820, 839, 1832
HphI	GGTGA	8 cut(s)	1001, 1144, 1597, 2485, 2536, 2704, 2705, 2980
Hpy166II	GTNNAC	4 cut(s)	867, 992, 1651, 2473
Hpy8I	GTNNAC	4 cut(s)	867, 992, 1651, 2473
Hpy99I	CGWCG	1 cut(s)	1311
HpyCH4IV	ACGT	1 cut(s)	1306
HpyF3I	CTNAG	8 cut(s)	228, 240, 576, 924, 971, 1434, 1902, 2639
HpySE526I	ACGT	1 cut(s)	1306
Hsp92I	GRCGYC	1 cut(s)	1948
HspAI	GCGC	4 cut(s)	943, 1355, 1906, 2375
KpnI	GGTACC	2 cut(s)	934, 1202
Ksp22I	TGATCA	4 cut(s)	349, 780, 913, 1639
KspAI	GTTAAC	2 cut(s)	867, 1651
LguI	GCTCTTC	2 cut(s)	66, 2957
LmnI	GCTCC	6 cut(s)	405, 1139, 1509, 1618, 2529, 3057
Lsp1109I	GCAGC	6 cut(s)	661, 736, 796, 1651, 1919, 2131
LweI	GCATC	4 cut(s)	761, 838, 1972, 2893
MabI	ACCWGGT	2 cut(s)	251, 2358
MaeI	CTAG	3 cut(s)	720, 756, 1230
MaeII	ACGT	1 cut(s)	1306
MaeIII	GTNAC	5 cut(s)	65, 1469, 1925, 2092, 2776
MfeI	CAATTG	3 cut(s)	747, 3030, 3142
MflI	RGATCY	4 cut(s)	479, 906, 1036, 2231
MhlI	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 3054
MlsI	TGGCCA	2 cut(s)	1091, 1364
MluNI	TGGCCA	2 cut(s)	1091, 1364
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	6 cut(s)	112, 2032, 2201, 2261, 2860, 2876
Mox20I	TGGCCA	2 cut(s)	1091, 1364
Mph1103I	ATGCAT	1 cut(s)	2271
MroXI	GAANNNNTTC	1 cut(s)	2163
MscI	TGGCCA	2 cut(s)	1091, 1364
MslI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
Msp20I	TGGCCA	2 cut(s)	1091, 1364
MspCI	CTTAAG	1 cut(s)	2153
MspI	CCGG	7 cut(s)	15, 27, 40, 488, 820, 839, 1832
MunI	CAATTG	3 cut(s)	747, 3030, 3142
Mva1269I	GAATGC	4 cut(s)	812, 1582, 2315, 2628
MvaI	CCWGG	9 cut(s)	104, 253, 280, 582, 1422, 1446, 1542, 2360, 3056
MvnI	CGCG	3 cut(s)	389, 945, 1590
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	3 cut(s)	403, 1092, 1415
NdeI	CATATG	1 cut(s)	3041
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	5 cut(s)	65, 1469, 1925, 2092, 2776
NsiI	ATGCAT	1 cut(s)	2271
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	3085
PagI	TCATGA	2 cut(s)	831, 844
PasI	CCCWGGG	1 cut(s)	279
PceI	AGGCCT	3 cut(s)	196, 1163, 1482
PciI	ACATGT	1 cut(s)	699
PciSI	GCTCTTC	2 cut(s)	66, 2957
PctI	GAATGC	4 cut(s)	812, 1582, 2315, 2628
PdmI	GAANNNNTTC	1 cut(s)	2163
PfeI	GAWTC	7 cut(s)	180, 835, 1453, 2460, 2924, 3087, 3138
Pfl23II	CGTACG	1 cut(s)	3020
PflMI	CCANNNNNTGG	2 cut(s)	1421, 1943
PkrI	GCNGC	8 cut(s)	497, 651, 726, 811, 1666, 1934, 1952, 2146
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PpuMI	RGGWCCY	3 cut(s)	1898, 2933, 3116
PscI	ACATGT	1 cut(s)	699
Psp124BI	GAGCTC	2 cut(s)	504, 1506
Psp5II	RGGWCCY	3 cut(s)	1898, 2933, 3116
Psp6I	CCWGG	9 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358, 3054
PspFI	CCCAGC	2 cut(s)	2215, 2891
PspGI	CCWGG	9 cut(s)	102, 251, 278, 580, 1420, 1444, 1540, 2358, 3054
PspLI	CGTACG	1 cut(s)	3020
PspPPI	RGGWCCY	3 cut(s)	1898, 2933, 3116
PstI	CTGCAG	1 cut(s)	2794
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	4 cut(s)	479, 906, 1036, 2231
RseI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
SacI	GAGCTC	2 cut(s)	504, 1506
SapI	GCTCTTC	2 cut(s)	66, 2957
SatI	GCNGC	8 cut(s)	496, 650, 725, 810, 1665, 1933, 1951, 2145
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	822
SduI	GDGCHC	7 cut(s)	78, 504, 1237, 1506, 1605, 1847, 3054
SexAI	ACCWGGT	2 cut(s)	251, 2358
SfaNI	GCATC	4 cut(s)	761, 838, 1972, 2893
SfcI	CTRYAG	1 cut(s)	2790
SfuI	TTCGAA	1 cut(s)	3085
SinI	GGWCC	9 cut(s)	428, 1438, 1585, 1693, 1829, 1898, 2933, 3045, 3116
SmiMI	CAYNNNNRTG	4 cut(s)	522, 698, 704, 2274
SmlI	CTYRAG	5 cut(s)	2134, 2153, 2444, 2453, 2633
SmoI	CTYRAG	5 cut(s)	2134, 2153, 2444, 2453, 2633
SseBI	AGGCCT	3 cut(s)	196, 1163, 1482
SsiI	CCGC	6 cut(s)	389, 484, 495, 1588, 1951, 2700
SspMI	CTAG	3 cut(s)	720, 756, 1230
SstI	GAGCTC	2 cut(s)	504, 1506
StuI	AGGCCT	3 cut(s)	196, 1163, 1482
StyI	CCWWGG	7 cut(s)	403, 1092, 1415, 1581, 1892, 2731, 3111
TaiI	ACGT	1 cut(s)	1309
TaqI	TCGA	4 cut(s)	775, 1309, 3085, 3090
TatI	WGTACW	2 cut(s)	1028, 1245
TauI	GCSGC	2 cut(s)	498, 1953
TfiI	GAWTC	7 cut(s)	180, 835, 1453, 2460, 2924, 3087, 3138
TscAI	CASTG	5 cut(s)	16, 248, 735, 1480, 2779
TseFI	GTSAC	5 cut(s)	65, 1469, 1925, 2092, 2776
TseI	GCWGC	6 cut(s)	649, 724, 809, 1664, 1932, 2144
Tsp45I	GTSAC	5 cut(s)	65, 1469, 1925, 2092, 2776
TspGWI	ACGGA	3 cut(s)	531, 2244, 3037
TspRI	CASTG	5 cut(s)	16, 248, 735, 1480, 2779
Van91I	CCANNNNNTGG	2 cut(s)	1421, 1943
Vha464I	CTTAAG	1 cut(s)	2153
VpaK11BI	GGWCC	9 cut(s)	428, 1438, 1585, 1693, 1829, 1898, 2933, 3045, 3116
XagI	CCTNNNNNAGG	1 cut(s)	1386
XapI	RAATTY	7 cut(s)	329, 445, 1181, 1214, 1821, 2056, 2552
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1579
XmnI	GAANNNNTTC	1 cut(s)	2163
XspI	CTAG	3 cut(s)	720, 756, 1230
ZrmI	AGTACT	1 cut(s)	1030
Zsp2I	ATGCAT	1 cut(s)	2271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.