pycom15g13440

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
9156553 .. 9158449
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1425 bp
ATGTCCAGTTCCCTCAAAGATTTGACGGCATTGACAGAAATCGATCGTTACGCGAACAGAAATACAGTCTTCTTTGATATTAACATGAAAGGTCTGGATGGAATTCAAGGTCCAGTGTATGTGGGCACAGGATGTGTGTTCAGAAGGCAAGCTTTATATGACTACGATCCTCCGAAGGGTCCTAAGCGCCCGAAGATGGTAAGCTGTGACTGTTGCCCGTGTTTTGGACGCCGCAAGAAGCTTCCAAAGTACTCCAAGCATGAAGCAAATGAAAATGCTGCAATCCTACAAGGAACGCATGATGACAAAGAGCTACTGATGTCCCAAATGAATTTTGAAAAGAAATTCGGACAGTCTGCAATTTTCGTGACTTCAACAATGATGGAACAAGGCGGTGTCCCTCCTTCCTCAAGCCCAGCAGCGATGCTTAAAGAAGCCATTCATGTGATCAGTTGCGGTTATGAAGACAAAACCGAATGGGGTTTAGAGCTAGGTTGGATTTACGGATCTATCACAGAGGACATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCAATTTACTGTATGCCAGATAGACCTGCATTCAAGGGTACAGCTCCCATCAACTTGTCAGATCGGCTCAACCAGGTTCTTCGTTGGGCACTTGGTTCCATTGAGATCTTTTTCAGTCGCCACAGTCCACTCTGGTATGGCTACAAGGGAGGGAAGCTCAAGTGGCTAGAGCGATTTGCTTATGTCAACACTACTGTCTACCCTTTCACCTCCCTTCCTCTTCTTGCGTATTGTATCCTCCCCGCTGTCTGCTTGCTCACTGACAAATTCATAATGCCACAGATAAGTACCTTTGCAAGTCTCTTCTTCATCGCGCTGTTTCTCTCAATCTTTGGAACCGGCATTCTTGAGCTGAGATGGAGTGGAGTGAGCATCGAAGAATGGTGGAGAAACGAGCAGTTCTGGGTGATTGGTGGTGTCTCATCTCACCTCTTCGCTGTTGTGCAAGGTCTTCTCAAGGTTTTAGCAGGCATTGACACCAACTTCACGGTCACAGCCAAGTCATCAGATGATGAGGATTTCGGAGAATTATATGCGTTTAAATGGACAACCCTCCTCATCCCTCCGACCACAATCTTAGTCATCAACCTTGTTGGAGTCGTTGCTGGGGTTTCGGACGCCATAAACAATGGGTACCAATCATGGGGGCCTCTGTTTGGGAAGCTCTTCTTTGCTTTTTGGGTGATTGTCCACCTCTATCCCTTCCTTAAAGGTCTTATGGGGAGACAGAACCGGACGCCAACCATTGTCGTCATTTGGTCAATTCTCCTGGCCTCCATCTTCTCGTTACTCTGGGTCCGAATCGATCCATTTGTGTTGAAAACCAAGGGACCTAACACGAAACAATGCGGAATCAATTGCTGA

Protein Analysis

475

Amino Acids

53.36

Weight (kDa)

8.78

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 12 - 468 6.3e-241 Cellulose synthase
Glyco_trans_2_3 PF13632 151 - 270 3.7e-07 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
Acc65I GGTACC 1 cut(s) 1194
AccB1I GGYRCC 1 cut(s) 1194
AccI GTMKAC 1 cut(s) 759
AccII CGCG 2 cut(s) 53, 875
AciI CCGC 5 cut(s) 232, 393, 456, 804, 1410
AclWI GGATC 3 cut(s) 161, 514, 1361
AcsI RAATTY 4 cut(s) 102, 331, 344, 827
AcyI GRCGYC 3 cut(s) 229, 1179, 1298
AfaI GTAC 4 cut(s) 251, 601, 850, 1196
AfiI CCNNNNNNNGG 5 cut(s) 176, 196, 224, 1204, 1217
AgsI TTSAA 6 cut(s) 107, 338, 375, 538, 595, 1381
AjnI CCWGG 2 cut(s) 633, 1329
AluBI AGCT 9 cut(s) 152, 204, 241, 313, 490, 605, 718, 913, 1225
AluI AGCT 9 cut(s) 152, 204, 241, 313, 490, 605, 718, 913, 1225
Alw26I GTCTC 3 cut(s) 866, 985, 1279
AlwI GGATC 3 cut(s) 161, 514, 1361
AoxI GGCC 2 cut(s) 1208, 1332
ApeKI GCWGC 2 cut(s) 278, 419
ApoI RAATTY 4 cut(s) 102, 331, 344, 827
Asp700I GAANNNNTTC 2 cut(s) 438, 1226
Asp718I GGTACC 1 cut(s) 1194
AspLEI GCGC 2 cut(s) 189, 877
AspS9I GGNCC 5 cut(s) 110, 179, 1208, 1357, 1391
AsuHPI GGTGA 4 cut(s) 760, 979, 980, 1255
AvaII GGWCC 4 cut(s) 110, 179, 1357, 1391
BaeGI GKGCMC 2 cut(s) 128, 652
BanI GGYRCC 1 cut(s) 1194
BbsI GAAGAC 3 cut(s) 61, 471, 1004
BbvI GCAGC 2 cut(s) 265, 431
BccI CCATC 6 cut(s) 92, 190, 376, 617, 912, 1346
BceAI ACGGC 2 cut(s) 42, 534
BciT130I CCWGG 2 cut(s) 635, 1331
BciVI GTATCC 1 cut(s) 806
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 866, 985, 1279
BfaI CTAG 2 cut(s) 491, 728
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 595
BfuI GTATCC 1 cut(s) 806
BglII AGATCT 1 cut(s) 666
BisI GCNGC 3 cut(s) 232, 279, 420
BlsI GCNGC 3 cut(s) 233, 280, 421
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 635, 1331
Bme18I GGWCC 4 cut(s) 110, 179, 1357, 1391
BmgT120I GGNCC 5 cut(s) 110, 179, 1208, 1357, 1391
BmiI GGNNCC 7 cut(s) 180, 658, 898, 1196, 1209, 1358, 1392
BmrFI CCNGG 2 cut(s) 635, 1331
BmsI GCATC 3 cut(s) 414, 531, 942
BpiI GAAGAC 3 cut(s) 61, 471, 1004
BplI GAGNNNNNCTC 2 cut(s) 702, 734
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 4 cut(s) 394, 704, 929, 1001
Bsa29I ATCGAT 2 cut(s) 42, 1365
BsaHI GRCGYC 3 cut(s) 229, 1179, 1298
BsaJI CCNNGG 2 cut(s) 550, 1386
BsaWI WCCGGW 1 cut(s) 1293
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 196, 224, 1204, 1217
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 2 cut(s) 6, 113
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 635, 1331
BseCI ATCGAT 2 cut(s) 42, 1365
BseDI CCNNGG 2 cut(s) 550, 1386
BseGI GGATG 4 cut(s) 103, 137, 522, 1119
BseLI CCNNNNNNNGG 5 cut(s) 176, 196, 224, 1204, 1217
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 905
BseNI ACTGG 2 cut(s) 6, 113
BseRI GAGGAG 1 cut(s) 1106
BseSI GKGCMC 2 cut(s) 128, 652
BseXI GCAGC 2 cut(s) 265, 431
BseYI CCCAGC 2 cut(s) 415, 1166
Bsh1236I CGCG 2 cut(s) 53, 875
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 1210, 1334
BshNI GGYRCC 1 cut(s) 1194
BshVI ATCGAT 2 cut(s) 42, 1365
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 900, 1294
BslFI GGGAC 3 cut(s) 307, 383, 1404
BslI CCNNNNNNNGG 5 cut(s) 176, 196, 224, 1204, 1217
BsmAI GTCTC 3 cut(s) 866, 985, 1279
BsmFI GGGAC 3 cut(s) 307, 383, 1404
BsmI GAATGC 2 cut(s) 590, 903
BsnI GGCC 2 cut(s) 1210, 1334
Bsp1286I GDGCHC 2 cut(s) 128, 652
Bsp143I GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
BspACI CCGC 5 cut(s) 232, 393, 456, 804, 1410
BspANI GGCC 2 cut(s) 1210, 1334
BspCNI CTCAG 1 cut(s) 906
BspDI ATCGAT 2 cut(s) 42, 1365
BspFNI CGCG 2 cut(s) 53, 875
BspLI GGNNCC 7 cut(s) 180, 658, 898, 1196, 1209, 1358, 1392
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 3 cut(s) 161, 514, 1361
BspQI GCTCTTC 1 cut(s) 1232
BspT107I GGYRCC 1 cut(s) 1194
BsrDI GCAATG 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 2 cut(s) 6, 113
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 2 cut(s) 550, 1386
BssMI GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
BssNI GRCGYC 3 cut(s) 229, 1179, 1298
BssT1I CCWWGG 1 cut(s) 1386
Bst2UI CCWGG 2 cut(s) 635, 1331
Bst4CI ACNGT 7 cut(s) 67, 212, 354, 572, 686, 757, 1051
Bst6I CTCTTC 4 cut(s) 786, 869, 998, 1232
BstACI GRCGYC 3 cut(s) 229, 1179, 1298
BstC8I GCNNGC 3 cut(s) 150, 815, 1030
BstDEI CTNAG 3 cut(s) 183, 914, 1138
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 4 cut(s) 103, 137, 522, 1119
BstFNI CGCG 2 cut(s) 53, 875
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 2 cut(s) 189, 877
BstKTI GATC 7 cut(s) 46, 169, 450, 509, 625, 669, 1369
BstMAI GTCTC 3 cut(s) 866, 985, 1279
BstMBI GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 724
BstNI CCWGG 2 cut(s) 635, 1331
BstSCI CCNGG 2 cut(s) 633, 1329
BstSLI GKGCMC 2 cut(s) 128, 652
BstUI CGCG 2 cut(s) 53, 875
BstV1I GCAGC 2 cut(s) 265, 431
BstV2I GAAGAC 3 cut(s) 61, 471, 1004
BstX2I RGATCY 2 cut(s) 506, 666
BstYI RGATCY 2 cut(s) 506, 666
Bsu15I ATCGAT 2 cut(s) 42, 1365
BsuI GTATCC 1 cut(s) 806
BsuRI GGCC 2 cut(s) 1210, 1334
BsuTUI ATCGAT 2 cut(s) 42, 1365
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 2 cut(s) 437, 856
BtsCI GGATG 4 cut(s) 103, 137, 522, 1119
BtsIMutI CAGTG 2 cut(s) 120, 819
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 150, 815, 1030
CfoI GCGC 2 cut(s) 189, 877
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 5 cut(s) 110, 179, 1208, 1357, 1391
ClaI ATCGAT 2 cut(s) 42, 1365
CseI GACGC 3 cut(s) 237, 1187, 1306
CsiI ACCWGGT 1 cut(s) 633
Csp6I GTAC 4 cut(s) 250, 600, 849, 1195
CviAII CATG 5 cut(s) 85, 260, 299, 443, 1203
CviQI GTAC 4 cut(s) 250, 600, 849, 1195
DdeI CTNAG 3 cut(s) 183, 914, 1138
DpnI GATC 7 cut(s) 45, 168, 449, 508, 624, 668, 1368
DpnII GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
DraI TTTAAA 1 cut(s) 1102
Eam1104I CTCTTC 4 cut(s) 786, 869, 998, 1232
EarI CTCTTC 4 cut(s) 786, 869, 998, 1232
Eco130I CCWWGG 1 cut(s) 1386
Eco47I GGWCC 4 cut(s) 110, 179, 1357, 1391
EcoO109I RGGNCCY 3 cut(s) 179, 1208, 1391
EcoRI GAATTC 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 633, 1329
EcoT14I CCWWGG 1 cut(s) 1386
EcoT22I ATGCAT 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 1386
FaeI CATG 5 cut(s) 88, 263, 302, 446, 1206
FalI AAGNNNNNCTT 4 cut(s) 136, 168, 1214, 1246
FaqI GGGAC 3 cut(s) 307, 383, 1404
FatI CATG 5 cut(s) 84, 259, 298, 442, 1202
FauI CCCGC 1 cut(s) 811
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 3 cut(s) 232, 279, 420
FokI GGATG 4 cut(s) 110, 144, 509, 1106
Fsp4HI GCNGC 3 cut(s) 232, 279, 420
FspBI CTAG 2 cut(s) 491, 728
GlaI GCGC 2 cut(s) 188, 876
GluI GCNGC 3 cut(s) 232, 279, 420
GsaI CCCAGC 2 cut(s) 419, 1170
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 1210, 1334
HapII CCGG 2 cut(s) 900, 1294
HgaI GACGC 3 cut(s) 237, 1187, 1306
HhaI GCGC 2 cut(s) 189, 877
Hin1I GRCGYC 3 cut(s) 229, 1179, 1298
Hin1II CATG 5 cut(s) 88, 263, 302, 446, 1206
Hin6I GCGC 2 cut(s) 187, 875
HinP1I GCGC 2 cut(s) 187, 875
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HindIII AAGCTT 2 cut(s) 150, 239
HinfI GANTC 3 cut(s) 1158, 1362, 1413
HpaII CCGG 2 cut(s) 900, 1294
HphI GGTGA 4 cut(s) 760, 979, 980, 1255
Hpy166II GTNNAC 4 cut(s) 689, 748, 760, 1252
Hpy188I TCNGA 9 cut(s) 143, 174, 350, 622, 1069, 1085, 1128, 1177, 1361
Hpy188III TCNNGA 4 cut(s) 95, 367, 538, 908
Hpy8I GTNNAC 4 cut(s) 689, 748, 760, 1252
HpyAV CCTTC 5 cut(s) 138, 169, 414, 785, 1273
HpyCH4III ACNGT 7 cut(s) 67, 212, 354, 572, 686, 757, 1051
HpyCH4V TGCA 6 cut(s) 281, 359, 544, 590, 857, 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 724
HpyF3I CTNAG 3 cut(s) 183, 914, 1138
Hsp92I GRCGYC 3 cut(s) 229, 1179, 1298
Hsp92II CATG 5 cut(s) 88, 263, 302, 446, 1206
HspAI GCGC 2 cut(s) 187, 875
KpnI GGTACC 1 cut(s) 1198
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
LguI GCTCTTC 1 cut(s) 1232
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 2 cut(s) 265, 431
LweI GCATC 3 cut(s) 414, 531, 942
MabI ACCWGGT 1 cut(s) 633
MaeI CTAG 2 cut(s) 491, 728
MaeIII GTNAC 5 cut(s) 47, 206, 367, 1051, 1347
MalI GATC 7 cut(s) 45, 168, 449, 508, 624, 668, 1368
MboI GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
MfeI CAATTG 1 cut(s) 1417
MflI RGATCY 2 cut(s) 506, 666
MhlI GDGCHC 2 cut(s) 128, 652
MluCI AATT 9 cut(s) 102, 331, 344, 360, 564, 827, 1088, 1323, 1417
MlyI GAGTC 1 cut(s) 1167
MmeI TCCRAC 4 cut(s) 476, 536, 1135, 1151
Mph1103I ATGCAT 1 cut(s) 546
MroXI GAANNNNTTC 2 cut(s) 438, 1226
MseI TTAA 4 cut(s) 81, 429, 1101, 1269
MslI CAYNNNNRTG 2 cut(s) 443, 549
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 2 cut(s) 900, 1294
MspR9I CCNGG 2 cut(s) 635, 1331
MunI CAATTG 1 cut(s) 1417
Mva1269I GAATGC 2 cut(s) 590, 903
MvaI CCWGG 2 cut(s) 635, 1331
MvnI CGCG 2 cut(s) 53, 875
MwoI GCNNNNNNNGC 1 cut(s) 724
NdeII GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
NlaIII CATG 5 cut(s) 88, 263, 302, 446, 1206
NlaIV GGNNCC 7 cut(s) 180, 658, 898, 1196, 1209, 1358, 1392
NmuCI GTSAC 3 cut(s) 206, 367, 1051
NsiI ATGCAT 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 1232
PctI GAATGC 2 cut(s) 590, 903
PdmI GAANNNNTTC 2 cut(s) 438, 1226
PfeI GAWTC 2 cut(s) 1362, 1413
PkrI GCNGC 3 cut(s) 233, 280, 421
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 1 cut(s) 1166
PpsI GAGTC 1 cut(s) 1166
PpuMI RGGWCCY 2 cut(s) 179, 1391
Psp5II RGGWCCY 2 cut(s) 179, 1391
Psp6I CCWGG 2 cut(s) 633, 1329
PspFI CCCAGC 2 cut(s) 415, 1166
PspGI CCWGG 2 cut(s) 633, 1329
PspN4I GGNNCC 7 cut(s) 180, 658, 898, 1196, 1209, 1358, 1392
PspPI GGNCC 5 cut(s) 110, 179, 1208, 1357, 1391
PspPPI RGGWCCY 2 cut(s) 179, 1391
PsuI RGATCY 2 cut(s) 506, 666
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 4 cut(s) 251, 601, 850, 1196
RsaNI GTAC 4 cut(s) 250, 600, 849, 1195
RseI CAYNNNNRTG 2 cut(s) 443, 549
SapI GCTCTTC 1 cut(s) 1232
SaqAI TTAA 4 cut(s) 81, 429, 1101, 1269
SatI GCNGC 3 cut(s) 232, 279, 420
Sau3AI GATC 7 cut(s) 43, 166, 447, 506, 622, 666, 1366
Sau96I GGNCC 5 cut(s) 110, 179, 1208, 1357, 1391
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 1 cut(s) 1167
ScrFI CCNGG 2 cut(s) 635, 1331
SduI GDGCHC 2 cut(s) 128, 652
SexAI ACCWGGT 1 cut(s) 633
SfaNI GCATC 3 cut(s) 414, 531, 942
SinI GGWCC 4 cut(s) 110, 179, 1357, 1391
SmiMI CAYNNNNRTG 2 cut(s) 443, 549
SmlI CTYRAG 4 cut(s) 409, 719, 908, 1016
SmoI CTYRAG 4 cut(s) 409, 719, 908, 1016
Sse9I AATT 9 cut(s) 102, 331, 344, 360, 564, 827, 1088, 1323, 1417
SsiI CCGC 5 cut(s) 232, 393, 456, 804, 1410
SspMI CTAG 2 cut(s) 491, 728
StyD4I CCNGG 2 cut(s) 633, 1329
StyI CCWWGG 1 cut(s) 1386
TaaI ACNGT 7 cut(s) 67, 212, 354, 572, 686, 757, 1051
TaqI TCGA 3 cut(s) 42, 936, 1365
TasI AATT 9 cut(s) 102, 331, 344, 360, 564, 827, 1088, 1323, 1417
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 1362, 1413
Tru1I TTAA 4 cut(s) 81, 429, 1101, 1269
Tru9I TTAA 4 cut(s) 81, 429, 1101, 1269
TscAI CASTG 2 cut(s) 120, 826
TseFI GTSAC 3 cut(s) 206, 367, 1051
TseI GCWGC 2 cut(s) 278, 419
Tsp45I GTSAC 3 cut(s) 206, 367, 1051
TspDTI ATGAA 8 cut(s) 101, 276, 285, 344, 431, 477, 820, 859
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 120, 826
VpaK11BI GGWCC 4 cut(s) 110, 179, 1357, 1391
XapI RAATTY 4 cut(s) 102, 331, 344, 827
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 2 cut(s) 438, 1226
XspI CTAG 2 cut(s) 491, 728
ZrmI AGTACT 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.