Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004372

Physical Location & Seq

Genomic Coordinates Forward (+)

9512777 .. 9513349

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATCACCATTCTGCATCTACTCAGAATAGGCAGCAGCAGTACACCCCTCAATTCAGCCAACATTTCCAACCCGAAAATAGCCACCCATCCGTCCCTCAGTTCATTGAATTTCCATTTGTGAGTTCCGACCAAACAGCGTTGATGAAATTTAATAACCCGGAACCAGCAGCATCACCTAGCAGCATGGGTTACATGCCAGTGGTTGGAGATTCACATTTTTCAGGAGATTGGACGAGGCCAAACTACGGGAATGGATTGGACGATTTTGTTGCTGATGAAATCCGGATCAGGAGTTCAGAGATGTTGGAGGGTGATGACATGCAAAGACTGCTCAAGACGTTTAGTCTGGGAGTCGGCGTAGGAGCAGGAGGAGCTGGTTTTGGTGCTTCTGATGACTCGTGTTATAATTACAGTGTACAATATGAGCCTCAGCCGTTCAGGAAAGAGCACACGAAGAGCTCAGGGAAGGCTGTTGTCGGGTGGCTTAAGCTCAAAGCTGCGTTAAGGTGGGGGATTTTTATTAGGAAGAGAGTTGCAGAAAGGAGAGCTCAGCTTACAGAGCTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

6.06

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18750 AT2G18750 AT2G18750 AT2G24300 AT2G24300 AT2G24300 AT4G25800 AT4G25800 AT4G31000 AT4G31000
fragaria_vesca	FvH4_1g01290 FvH4_1g01290 FvH4_1g01290 FvH4_1g01290
malus_domestica	MD02G1010800.v1.1 MD15G1155700.v1.1
prunus_persica	Prupe.7G259400_v2.0.a1 Prupe.7G259400_v2.0.a1 Prupe.7G259400_v2.0.a1
pyrus_communis	pycom02g00970 pycom15g13970 pycom15g13980
rosa_chinensis	RchiOBHm_Chr2g0086121
rosa_laevigata	RLG00000015745
rosa_multiflora	Rmu_sc0004510.1_g000002
rosa_roxburghii	Rroxscaffold_2G00154790
rosa_rugosa	Rorug01G0465800
rosa_samantha	Rh2AG015500 Rh2BG015600 Rh2CG016500 Rh2DG017600
rosa_wichuraiana	Rw2G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	285
AclWI	GGATC	2 cut(s)	12, 296
AcsI	RAATTY	2 cut(s)	110, 149
AfaI	GTAC	2 cut(s)	44, 420
AfiI	CCNNNNNNNGG	2 cut(s)	206, 248
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	7 cut(s)	377, 462, 493, 500, 551, 556, 565
AluI	AGCT	7 cut(s)	377, 462, 493, 500, 551, 556, 565
Alw21I	GWGCWC	3 cut(s)	453, 464, 553
AlwI	GGATC	2 cut(s)	12, 296
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	5 cut(s)	34, 37, 170, 183, 500
ApoI	RAATTY	2 cut(s)	110, 149
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	168, 326
BanII	GRGCYC	2 cut(s)	464, 553
BauI	CACGAG	1 cut(s)	400
Bbv12I	GWGCWC	3 cut(s)	453, 464, 553
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	2 cut(s)	180, 566
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	36, 39, 172, 185, 502
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	26, 182
Bpu10I	CCTNAGC	2 cut(s)	432, 463
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 248
Bse1I	ACTGG	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	285
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	206, 248
BseMII	CTCAG	5 cut(s)	38, 113, 446, 477, 566
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	453, 464, 553
BsiSI	CCGG	2 cut(s)	161, 286
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	206, 248
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	453, 464, 553
Bsp13I	TCCGGA	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	4, 288
Bsp1720I	GCTNAGC	1 cut(s)	552
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	5 cut(s)	37, 112, 445, 476, 565
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	12, 296
BspQI	GCTCTTC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	4, 288
BssSI	CACGAG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	2 cut(s)	452, 524
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	5 cut(s)	24, 99, 432, 463, 552
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	7, 291
BstMBI	GATC	2 cut(s)	4, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
BstNSI	RCATGY	2 cut(s)	199, 325
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	207, 421
Csp6I	GTAC	2 cut(s)	43, 419
CviAII	CATG	3 cut(s)	187, 196, 322
CviQI	GTAC	2 cut(s)	43, 419
DdeI	CTNAG	5 cut(s)	24, 99, 432, 463, 552
DpnI	GATC	2 cut(s)	6, 290
DpnII	GATC	2 cut(s)	4, 288
DriI	GACNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	452, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	2 cut(s)	452, 524
Ecl136II	GAGCTC	2 cut(s)	462, 551
Eco24I	GRGCYC	2 cut(s)	464, 553
Eco53kI	GAGCTC	2 cut(s)	462, 551
EcoICRI	GAGCTC	2 cut(s)	462, 551
EcoT38I	GRGCYC	2 cut(s)	464, 553
FaeI	CATG	3 cut(s)	190, 199, 325
FaiI	YATR	5 cut(s)	188, 197, 323, 408, 426
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	186, 195, 321
Fnu4HI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	464, 553
Fsp4HI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
FspBI	CTAG	2 cut(s)	180, 566
GluI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	161, 286
Hin1II	CATG	3 cut(s)	190, 199, 325
HinfI	GANTC	3 cut(s)	212, 354, 398
HpaII	CCGG	2 cut(s)	161, 286
HphI	GGTGA	2 cut(s)	168, 326
Hpy166II	GTNNAC	2 cut(s)	45, 419
Hpy188I	TCNGA	4 cut(s)	27, 130, 301, 394
Hpy188III	TCNNGA	5 cut(s)	225, 286, 292, 337, 442
Hpy8I	GTNNAC	2 cut(s)	45, 419
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	17, 325, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
HpyF3I	CTNAG	5 cut(s)	24, 99, 432, 463, 552
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	190, 199, 325
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	4, 288
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	2 cut(s)	365, 374
Lsp1109I	GCAGC	5 cut(s)	46, 49, 182, 195, 487
LweI	GCATC	2 cut(s)	26, 182
MaeI	CTAG	2 cut(s)	180, 566
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	6, 290
MboI	GATC	2 cut(s)	4, 288
MboII	GAAGA	2 cut(s)	469, 541
MhlI	GDGCHC	3 cut(s)	453, 464, 553
MluCI	AATT	4 cut(s)	53, 110, 149, 409
MlyI	GAGTC	2 cut(s)	363, 392
MmeI	TCCRAC	4 cut(s)	94, 153, 187, 288
MnlI	CCTC	6 cut(s)	60, 108, 231, 304, 365, 441
MroI	TCCGGA	1 cut(s)	285
MseI	TTAA	3 cut(s)	153, 489, 506
MslI	CAYNNNNRTG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	161, 286
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	4, 288
NlaIII	CATG	3 cut(s)	190, 199, 325
NlaIV	GGNNCC	1 cut(s)	165
NspI	RCATGY	2 cut(s)	199, 325
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	36, 39, 172, 185, 502
PleI	GAGTC	2 cut(s)	362, 392
PpsI	GAGTC	2 cut(s)	362, 392
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	2 cut(s)	464, 553
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	2 cut(s)	44, 420
RsaNI	GTAC	2 cut(s)	43, 419
RseI	CAYNNNNRTG	1 cut(s)	200
SacI	GAGCTC	2 cut(s)	464, 553
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	153, 489, 506
SatI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
Sau3AI	GATC	2 cut(s)	4, 288
SchI	GAGTC	2 cut(s)	363, 392
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	3 cut(s)	453, 464, 553
SfaNI	GCATC	2 cut(s)	26, 182
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	335, 488
SmoI	CTYRAG	2 cut(s)	335, 488
Sse9I	AATT	4 cut(s)	53, 110, 149, 409
SspMI	CTAG	2 cut(s)	180, 566
SstI	GAGCTC	2 cut(s)	464, 553
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	344
TasI	AATT	4 cut(s)	53, 110, 149, 409
TatI	WGTACW	2 cut(s)	42, 418
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	153, 489, 506
Tru9I	TTAA	3 cut(s)	153, 489, 506
TscAI	CASTG	2 cut(s)	207, 421
TseI	GCWGC	5 cut(s)	34, 37, 170, 183, 500
TspDTI	ATGAA	3 cut(s)	94, 161, 294
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	207, 421
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	488
XapI	RAATTY	2 cut(s)	110, 149
XceI	RCATGY	2 cut(s)	199, 325
XspI	CTAG	2 cut(s)	180, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.