pycom15g17060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014631
Physical Location & Seq
Forward (+)
11978965 .. 11981912
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGGCGGGAGGCGCGAGCAGGAAGGACGAGTCGGTGGTCCTGAACAGCACCAATGTTTTTGCGGCGCTTGGGAGCTTGAAGAAGAAGAAGAAGGGGGACAAGAGCTCGTCCAAAAGCTCGAAAGGCGGCGGCGCAGCTCAGGATTCTGGGGAGGCGGAGAAGGAGGTCTTTTGGGCACCGGCGCCCCTTGTCGCAAAGTCGTGGGCCGATGTCGATGACGAGGACGATGACGACTACTATGCAACTACAGCTCCGCCGGAAATGGGTTGGGCCGGTGAGGATTCGAAGGCGGCGAAGGAAAGCGAGCTGGAAGCTGAGCATGCGGAGGCCGGCGAATTGGAAAGTGAAAGTGAGGAGGAAGGTGGTGATGAAGTTGATGATGTTGATGAGGAACATGAAAATGAACTTGAAGCCCCAGTGGAAACTGAACCAGTTAAGAAGCTCCCTGAACCTTCTCCAGCCCCCAAGGATACAGAAAGGCAGCTTTCTAAGAAGGAACTGAAGAAGAAGGGGCTTGAAGAACTTGAAGCAGTTCTTGCCGAGCTAGGATACCCTACCAACACCGAGACTAGCGGCCAAGATGATTCCAGTGGTGTTACCCAAGAGAAGAAAGTAGAGAATCAAAATGGCGATGTGGACAAGAAGGAGAATGCCATTGGCGAGAGCAAAAGTGCAAAAAAGAAGAAAAAGAAGGACAAGTCATCGAAGGAGCCAAAAGAATCTCAAGACCAGCCCGATGGCACAAATGGTGGAAGTGCGGCAGCAGATGAAAACACTGGGAGGGATAAGGGAGAAGATGCATCTACTGGTGATGTTAAAGAGCGGCTAAAGAAAGTGGCATCCATGAAGAAGAAGAAATCAAGCAAAGAAATGGATGCAGCTGCTCGAGCTGCTGCAAGTGAAGCTGCTGCCAGGAACGCTAGGCTAGCTGCCTCAAAGAAAAAAGAGAAGAATCACTACAATCAGCAGCCAGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

34.93

Weight (kDa)

4.91

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014631)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05450
malus_domestica MD02G1062600.v1.1 MD15G1190400.v1.1
prunus_persica Prupe.7G226700_v2.0.a1
pyrus_communis pycom02g04330 pycom15g17060
rosa_chinensis RchiOBHm_Chr2g0091121
rosa_laevigata RLG00000016181
rosa_multiflora Rmu_sc0004851.1_g000008
rosa_roxburghii Rroxscaffold_2G00150530
rosa_rugosa Rorug02G0013100 Rorug02G0013200
rosa_samantha Rh2AG059400 Rh2BG057800 Rh2CG059600 Rh2DG058700
rosa_wichuraiana Rw2G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 175, 181
AccBSI CCGCTC 1 cut(s) 823
AccII CGCG 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 521
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 4 cut(s) 79, 410, 518, 527
AjnI CCWGG 1 cut(s) 911
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 4 cut(s) 204, 270, 327, 574
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 4 cut(s) 14, 67, 134, 184
AspS9I GGNCC 3 cut(s) 37, 204, 270
AsuHPI GGTGA 3 cut(s) 287, 377, 821
AsuII TTCGAA 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 885
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 178
BanI GGYRCC 2 cut(s) 175, 181
BanII GRGCYC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 941, 973
Bbv12I GWGCWC 1 cut(s) 107
BccI CCATC 1 cut(s) 731
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 913
BciVI GTATCC 2 cut(s) 463, 542
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 4 cut(s) 545, 570, 921, 926
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 2 cut(s) 68, 185
BfuI GTATCC 2 cut(s) 463, 542
BlpI GCTNAGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 913
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 3 cut(s) 37, 204, 270
BmiI GGNNCC 3 cut(s) 177, 183, 711
BmrFI CCNGG 1 cut(s) 913
BmrI ACTGGG 2 cut(s) 410, 786
BmsI GCATC 4 cut(s) 787, 809, 848, 865
BmtI GCTAGC 1 cut(s) 929
BmuI ACTGGG 2 cut(s) 410, 786
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse118I RCCGGY 3 cut(s) 178, 272, 329
Bse1I ACTGG 6 cut(s) 416, 431, 588, 781, 811, 971
BseBI CCWGG 1 cut(s) 913
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 839, 880
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 152, 306
BseNI ACTGG 6 cut(s) 416, 431, 588, 781, 811, 971
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 4 cut(s) 206, 272, 329, 576
BshNI GGYRCC 2 cut(s) 175, 181
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 4 cut(s) 179, 257, 273, 330
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 4 cut(s) 206, 272, 329, 576
BsoBI CYCGRG 1 cut(s) 885
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 107, 178
Bsp1720I GCTNAGC 1 cut(s) 315
BspANI GGCC 4 cut(s) 206, 272, 329, 576
BspCNI CTCAG 2 cut(s) 151, 307
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 177, 183, 711
BspOI GCTAGC 1 cut(s) 929
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 175, 181
BsrBI CCGCTC 1 cut(s) 823
BsrFI RCCGGY 3 cut(s) 178, 272, 329
BsrI ACTGG 6 cut(s) 416, 431, 588, 781, 811, 971
BssAI RCCGGY 3 cut(s) 178, 272, 329
BssECI CCNNGG 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 913
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 536, 973
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 5 cut(s) 16, 305, 321, 331, 927
BstDEI CTNAG 3 cut(s) 138, 315, 489
BstF5I GGATG 2 cut(s) 839, 880
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 68, 185
BstHHI GCGC 4 cut(s) 14, 67, 134, 184
BstMAI GTCTC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 913
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 911
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 737
BsuI GTATCC 2 cut(s) 463, 542
BsuRI GGCC 4 cut(s) 206, 272, 329, 576
BtgZI GCGATG 1 cut(s) 645
BtsCI GGATG 2 cut(s) 839, 880
BtsIMutI CAGTG 4 cut(s) 423, 595, 774, 978
Cac8I GCNNGC 5 cut(s) 16, 305, 321, 331, 927
CfoI GCGC 4 cut(s) 14, 67, 134, 184
Cfr10I RCCGGY 3 cut(s) 178, 272, 329
Cfr13I GGNCC 3 cut(s) 37, 204, 270
CviAII CATG 3 cut(s) 320, 395, 844
DdeI CTNAG 3 cut(s) 138, 315, 489
DinI GGCGCC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 574
EciI GGCGGA 2 cut(s) 170, 243
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 885
EcoICRI GAGCTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 911
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 323, 398, 847
FaiI YATR 4 cut(s) 240, 321, 396, 845
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 519, 551
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 319, 394, 843
FokI GGATG 2 cut(s) 826, 887
FriOI GRGCYC 1 cut(s) 107
FspBI CTAG 4 cut(s) 545, 570, 921, 926
GlaI GCGC 4 cut(s) 13, 66, 133, 183
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 68, 185
HaeIII GGCC 4 cut(s) 206, 272, 329, 576
HapII CCGG 4 cut(s) 179, 257, 273, 330
HhaI GCGC 4 cut(s) 14, 67, 134, 184
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 323, 398, 847
Hin6I GCGC 4 cut(s) 12, 65, 132, 182
HinP1I GCGC 4 cut(s) 12, 65, 132, 182
HinfI GANTC 7 cut(s) 29, 143, 281, 584, 619, 719, 952
HpaII CCGG 4 cut(s) 179, 257, 273, 330
HphI GGTGA 3 cut(s) 287, 377, 821
Hpy166II GTNNAC 1 cut(s) 637
Hpy188III TCNNGA 3 cut(s) 40, 140, 725
Hpy8I GTNNAC 1 cut(s) 637
HpyCH4V TGCA 5 cut(s) 242, 674, 800, 878, 896
HpyF3I CTNAG 3 cut(s) 138, 315, 489
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 323, 398, 847
HspAI GCGC 4 cut(s) 12, 65, 132, 182
KasI GGCGCC 1 cut(s) 181
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
LmnI GCTCC 4 cut(s) 72, 256, 447, 709
LweI GCATC 4 cut(s) 787, 809, 848, 865
MaeI CTAG 4 cut(s) 545, 570, 921, 926
MaeIII GTNAC 1 cut(s) 595
MbiI CCGCTC 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 107, 178
MluCI AATT 1 cut(s) 335
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 38
Mph1103I ATGCAT 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 2 cut(s) 435, 816
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 4 cut(s) 179, 257, 273, 330
MspR9I CCNGG 1 cut(s) 913
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 913
MvnI CGCG 1 cut(s) 14
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 329
NheI GCTAGC 1 cut(s) 925
NlaIII CATG 3 cut(s) 323, 398, 847
NlaIV GGNNCC 3 cut(s) 177, 183, 711
NmeAIII GCCGAG 1 cut(s) 565
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 1 cut(s) 323
NspV TTCGAA 1 cut(s) 284
PaeI GCATGC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 885
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PctI GAATGC 1 cut(s) 655
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 6 cut(s) 143, 281, 584, 619, 719, 952
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 911
PspGI CCWGG 1 cut(s) 911
PspN4I GGNNCC 3 cut(s) 177, 183, 711
PspPI GGNCC 3 cut(s) 37, 204, 270
PspXI VCTCGAGB 1 cut(s) 885
PvuII CAGCTG 1 cut(s) 881
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 435, 816
Sau96I GGNCC 3 cut(s) 37, 204, 270
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 913
SduI GDGCHC 2 cut(s) 107, 178
SfaNI GCATC 4 cut(s) 787, 809, 848, 865
SfcI CTRYAG 1 cut(s) 246
SfoI GGCGCC 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 885
SfuI TTCGAA 1 cut(s) 284
SgrAI CRCCGGYG 1 cut(s) 178
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 885
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 723, 885
SmoI CTYRAG 2 cut(s) 723, 885
SphI GCATGC 1 cut(s) 323
Sse9I AATT 1 cut(s) 335
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 4 cut(s) 545, 570, 921, 926
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 911
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 5 cut(s) 119, 213, 284, 704, 886
TasI AATT 1 cut(s) 335
TauI GCSGC 7 cut(s) 65, 129, 132, 293, 576, 761, 826
TfiI GAWTC 6 cut(s) 143, 281, 584, 619, 719, 952
Tru1I TTAA 2 cut(s) 435, 816
Tru9I TTAA 2 cut(s) 435, 816
TscAI CASTG 4 cut(s) 423, 595, 781, 978
TspDTI ATGAA 5 cut(s) 384, 411, 417, 783, 860
TspRI CASTG 4 cut(s) 423, 595, 781, 978
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 4 cut(s) 545, 570, 921, 926
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.