Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005068

Physical Location & Seq

Genomic Coordinates Forward (+)

12051860 .. 12054604

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCCGGGGCTCCAACTCCGACCCTGAAGATTCACCCATCCCGACTTCCTCAGCCACACTCACACCGTCACTGCCTCGATCAAATTCTTATGCCAACCAAAAAATGGCGAATTTTCAAGCTCGGACATGGCTTTACAGAACCTTCTCGACCGTCGCTTCTCAGCCTCTTCGCGTCTGCGTAGTCGGAAGCGGACCTGCTGGCTTCTACACTGCTGAAAAGATGCTGAAGGCGCACCAGGAAGCAGAGGTGGATATCATTGATCGGTTGCCAACGCCTTTCGGATTAGTCCGCTCCGGCGTCGCGCCTGATCATCCCGAAACAAAGATTGTGGTGAACCAGTTTACGCGAGTTGCACAACATGAACGCTGCTCGTTCTTTGGAAACATCACCCTTGGATCCTCTGTAACTCTCCCGGAGCTACGTGAGTTGTACGATGTGGTTGTGCTTGCCTATGGAGCTGAGAGTGATAGAGGTCTTGGTATCCCAGGAGAAGATTTGAGTGGTGTATATGCAGCCAGAGAATTTGTTTGGTGGTATAATGGGCACCCAAATTGCAGATACCTAAATCCCGACTTGAAGAGTTCTGATACTGCTATAATTCTTGGTCAGGGCAATGTAGCTCTTGATGCTGCACGTATTCTTTTACGCCCAACAACAGAATTGGCCACAACTGATATTGCAAGCCATGCTTTGGCAGCTCTTGAAGATAGCTCTATAAGGAAAGTGTATTTGGTTGGAAGGCGGGGACCGGTCCAAGCAGCTTGCACTGCTAAGGAGCTTCGTGAAATTCTTGGTATCAAAGATCGATCATGTTCACATAAAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016491 GO:0016730 GO:0016731 GO:0022900 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

278

Amino Acids

30.15

Weight (kDa)

7.01

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	58 - 238	3.1e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360 AT4G32360
fragaria_vesca	FvH4_1g05550
malus_domestica	MD02G1057100.v1.1 MD15G1191600.v1.1
prunus_persica	Prupe.7G225700_v2.0.a1 Prupe.7G225700_v2.0.a1
pyrus_communis	pycom02g04610 pycom02g04620 pycom15g17150 pycom15g17160
rosa_chinensis	RchiOBHm_Chr2g0091251
rosa_laevigata	RLG00000016196
rosa_multiflora	Rmu_sc0002270.1_g000019
rosa_roxburghii	Rroxscaffold_2G00150340
rosa_rugosa	Rorug02G0014900 Rorug02G0015000
rosa_samantha	Rh2AG060600 Rh2BG059400 Rh2CG061200 Rh2CG061300 Rh2DG059900
rosa_wichuraiana	Rw2G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	546
AccB7I	CCANNNNNTGG	2 cut(s)	106, 694
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	3 cut(s)	174, 305, 349
AciI	CCGC	3 cut(s)	192, 292, 745
AclWI	GGATC	2 cut(s)	393, 406
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	4 cut(s)	85, 112, 524, 789
AcuI	CTGAAG	2 cut(s)	48, 248
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	106, 694
AgeI	ACCGGT	1 cut(s)	751
AgsI	TTSAA	3 cut(s)	119, 580, 707
AjnI	CCWGG	2 cut(s)	237, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	8 cut(s)	122, 421, 461, 623, 701, 714, 764, 781
AluI	AGCT	8 cut(s)	122, 421, 461, 623, 701, 714, 764, 781
AlwI	GGATC	2 cut(s)	393, 406
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	3, 666
ApeKI	GCWGC	5 cut(s)	369, 515, 632, 698, 761
ApoI	RAATTY	4 cut(s)	85, 112, 524, 789
AsiGI	ACCGGT	1 cut(s)	751
AspLEI	GCGC	2 cut(s)	235, 307
AspS9I	GGNCC	4 cut(s)	4, 194, 749, 754
AsuC2I	CCSGG	3 cut(s)	7, 8, 416
AsuHPI	GGTGA	3 cut(s)	27, 346, 382
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	3 cut(s)	194, 749, 754
BaeGI	GKGCMC	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	668
BamHI	GGATCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	5 cut(s)	356, 527, 619, 710, 773
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	239, 489
BciVI	GTATCC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	3 cut(s)	7, 8, 416
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	5 cut(s)	370, 516, 633, 699, 762
BlsI	GCNGC	5 cut(s)	371, 517, 634, 700, 763
Bme1390I	CCNGG	5 cut(s)	7, 8, 239, 416, 489
Bme18I	GGWCC	3 cut(s)	194, 749, 754
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	4 cut(s)	4, 194, 749, 754
BmiI	GGNNCC	4 cut(s)	13, 400, 548, 750
BmrFI	CCNGG	5 cut(s)	7, 8, 239, 416, 489
BmsI	GCATC	2 cut(s)	213, 619
Bpu10I	CCTNAGC	2 cut(s)	52, 774
BpuMI	CCSGG	3 cut(s)	7, 8, 416
Bsa29I	ATCGAT	1 cut(s)	808
BsaAI	YACGTR	2 cut(s)	425, 638
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	6, 7, 394, 487
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 694
Bse118I	RCCGGY	1 cut(s)	751
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	239, 489
BseCI	ATCGAT	1 cut(s)	808
BseDI	CCNNGG	4 cut(s)	6, 7, 394, 487
BseGI	GGATG	2 cut(s)	39, 313
BseLI	CCNNNNNNNGG	2 cut(s)	106, 694
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	3 cut(s)	66, 176, 453
BseNI	ACTGG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	5 cut(s)	356, 527, 619, 710, 773
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	3 cut(s)	174, 305, 349
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	5, 668
BshNI	GGYRCC	1 cut(s)	546
BshTI	ACCGGT	1 cut(s)	751
BshVI	ATCGAT	1 cut(s)	808
BsiEI	CGRYCG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	7, 297, 416, 752
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	2 cut(s)	106, 694
BsmFI	GGGAC	1 cut(s)	762
BsnI	GGCC	2 cut(s)	5, 668
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	14, 549
Bsp143I	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
BspACI	CCGC	3 cut(s)	192, 292, 745
BspANI	GGCC	2 cut(s)	5, 668
BspCNI	CTCAG	3 cut(s)	65, 175, 454
BspDI	ATCGAT	1 cut(s)	808
BspFNI	CGCG	3 cut(s)	174, 305, 349
BspLI	GGNNCC	4 cut(s)	13, 400, 548, 750
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	393, 406
BspT107I	GGYRCC	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	751
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	4 cut(s)	6, 7, 394, 487
BssMI	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	239, 489
Bst4CI	ACNGT	2 cut(s)	69, 154
Bst6I	CTCTTC	2 cut(s)	174, 575
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	2 cut(s)	425, 638
BstC8I	GCNNGC	4 cut(s)	202, 450, 685, 766
BstDEI	CTNAG	4 cut(s)	52, 162, 462, 774
BstF5I	GGATG	2 cut(s)	39, 313
BstFNI	CGCG	3 cut(s)	174, 305, 349
BstHHI	GCGC	2 cut(s)	235, 307
BstKTI	GATC	6 cut(s)	83, 265, 313, 401, 808, 812
BstMBI	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	6 cut(s)	232, 458, 629, 689, 698, 770
BstNI	CCWGG	2 cut(s)	239, 489
BstSCI	CCNGG	5 cut(s)	5, 6, 237, 414, 487
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	3 cut(s)	174, 305, 349
BstV1I	GCAGC	5 cut(s)	356, 527, 619, 710, 773
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	808
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	5, 668
BsuTUI	ATCGAT	1 cut(s)	808
BtsCI	GGATG	2 cut(s)	39, 313
BtsI	GCAGTG	3 cut(s)	71, 210, 768
BtsIMutI	CAGTG	3 cut(s)	71, 210, 768
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	4 cut(s)	202, 450, 685, 766
CfoI	GCGC	2 cut(s)	235, 307
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	4 cut(s)	4, 194, 749, 754
Cfr9I	CCCGGG	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	808
CseI	GACGC	2 cut(s)	163, 289
Csp6I	GTAC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	751
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	4 cut(s)	129, 362, 689, 813
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	4 cut(s)	52, 162, 462, 774
DpnI	GATC	6 cut(s)	82, 264, 312, 400, 807, 811
DpnII	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	2 cut(s)	174, 575
EarI	CTCTTC	2 cut(s)	174, 575
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	194, 749, 754
Eco57I	CTGAAG	2 cut(s)	48, 248
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	237, 487
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	132, 365, 692, 816
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	4 cut(s)	128, 361, 688, 812
FauI	CCCGC	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	370, 516, 633, 699, 762
FokI	GGATG	2 cut(s)	26, 300
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	5 cut(s)	370, 516, 633, 699, 762
GlaI	GCGC	2 cut(s)	234, 306
GluI	GCNGC	5 cut(s)	370, 516, 633, 699, 762
HaeIII	GGCC	2 cut(s)	5, 668
HapII	CCGG	4 cut(s)	7, 297, 416, 752
HgaI	GACGC	2 cut(s)	163, 289
HhaI	GCGC	2 cut(s)	235, 307
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	132, 365, 692, 816
Hin6I	GCGC	2 cut(s)	233, 305
HinP1I	GCGC	2 cut(s)	233, 305
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	4 cut(s)	7, 297, 416, 752
HphI	GGTGA	3 cut(s)	27, 346, 382
Hpy166II	GTNNAC	3 cut(s)	337, 345, 818
Hpy188I	TCNGA	5 cut(s)	22, 126, 188, 284, 589
Hpy188III	TCNNGA	7 cut(s)	43, 148, 317, 572, 626, 704, 785
Hpy8I	GTNNAC	3 cut(s)	337, 345, 818
Hpy99I	CGWCG	2 cut(s)	158, 305
HpyAV	CCTTC	3 cut(s)	154, 223, 735
HpyCH4III	ACNGT	2 cut(s)	69, 154
HpyCH4IV	ACGT	2 cut(s)	424, 637
HpyCH4V	TGCA	6 cut(s)	356, 515, 558, 635, 683, 768
HpyF10VI	GCNNNNNNNGC	6 cut(s)	232, 458, 629, 689, 698, 770
HpyF3I	CTNAG	4 cut(s)	52, 162, 462, 774
HpySE526I	ACGT	2 cut(s)	424, 637
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	132, 365, 692, 816
HspAI	GCGC	2 cut(s)	233, 305
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
LmnI	GCTCC	5 cut(s)	17, 299, 418, 458, 778
Lsp1109I	GCAGC	5 cut(s)	356, 527, 619, 710, 773
LweI	GCATC	2 cut(s)	213, 619
MaeII	ACGT	2 cut(s)	424, 637
MaeIII	GTNAC	2 cut(s)	69, 406
MalI	GATC	6 cut(s)	82, 264, 312, 400, 807, 811
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
MboII	GAAGA	5 cut(s)	41, 161, 506, 592, 719
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	14, 549
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	7 cut(s)	85, 112, 524, 553, 600, 662, 789
MluNI	TGGCCA	1 cut(s)	668
MmeI	TCCRAC	4 cut(s)	39, 45, 166, 718
MnlI	CCTC	6 cut(s)	61, 87, 177, 241, 412, 467
Mox20I	TGGCCA	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	668
MspI	CCGG	4 cut(s)	7, 297, 416, 752
MspR9I	CCNGG	5 cut(s)	7, 8, 239, 416, 489
MvaI	CCWGG	2 cut(s)	239, 489
MvnI	CGCG	3 cut(s)	174, 305, 349
MwoI	GCNNNNNNNGC	6 cut(s)	232, 458, 629, 689, 698, 770
NciI	CCSGG	3 cut(s)	7, 8, 416
NdeII	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
NlaIII	CATG	4 cut(s)	132, 365, 692, 816
NlaIV	GGNNCC	4 cut(s)	13, 400, 548, 750
NmuCI	GTSAC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	2 cut(s)	106, 694
PfoI	TCCNGGA	1 cut(s)	414
PinAI	ACCGGT	1 cut(s)	751
PkrI	GCNGC	5 cut(s)	371, 517, 634, 700, 763
Ppu21I	YACGTR	2 cut(s)	425, 638
Psp6I	CCWGG	2 cut(s)	237, 487
PspGI	CCWGG	2 cut(s)	237, 487
PspN4I	GGNNCC	4 cut(s)	13, 400, 548, 750
PspPI	GGNCC	4 cut(s)	4, 194, 749, 754
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SatI	GCNGC	5 cut(s)	370, 516, 633, 699, 762
Sau3AI	GATC	6 cut(s)	80, 262, 310, 398, 805, 809
Sau96I	GGNCC	4 cut(s)	4, 194, 749, 754
ScrFI	CCNGG	5 cut(s)	7, 8, 239, 416, 489
SduI	GDGCHC	2 cut(s)	14, 549
SfaNI	GCATC	2 cut(s)	213, 619
SinI	GGWCC	3 cut(s)	194, 749, 754
SmaI	CCCGGG	1 cut(s)	8
Sse9I	AATT	7 cut(s)	85, 112, 524, 553, 600, 662, 789
SsiI	CCGC	3 cut(s)	192, 292, 745
StyD4I	CCNGG	5 cut(s)	5, 6, 237, 414, 487
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	69, 154
TaiI	ACGT	2 cut(s)	427, 640
TaqI	TCGA	3 cut(s)	79, 149, 808
TasI	AATT	7 cut(s)	85, 112, 524, 553, 600, 662, 789
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	3 cut(s)	78, 217, 775
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	5 cut(s)	369, 515, 632, 698, 761
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	378
TspMI	CCCGGG	1 cut(s)	6
TspRI	CASTG	3 cut(s)	78, 217, 775
Van91I	CCANNNNNTGG	2 cut(s)	106, 694
VpaK11BI	GGWCC	3 cut(s)	194, 749, 754
XapI	RAATTY	4 cut(s)	85, 112, 524, 789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmaI	CCCGGG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.