pycom15g17390

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010126
Physical Location & Seq
Forward (+)
12271627 .. 12273456
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1830 bp
ATGACGTCTCTGAAGGAGCTGATTCCGCCGCCAACGGCATCCACAACGACATACTACGACCACTCGAGCGATCCGTGGTTCCGGCAGCGGTTCAGTTCTTCCGAGGCGGAAAGATCTGCTGCTGTTGTTAAACCTAATCCTGTGCCTCAGTACTTGAAGCGCCAAGGCTTTGTTCCTAGGAAGGTGGAGGACTTCGGGGAAGGTGGCGCTTTCCCGGAGATTCACATAGCTCAGTACCCTCTTGGCATGGGCCGGGACAAGGTGTCGAAACCTGGGACAAAAATTCTTCCGGTTTCAGTTGATGCCAATGGGGAGATTGCGTATGATGCGATTGTTAAACAGAATGAGAACTCGAGAAAGATTGTGTATTCTCAACATAAGGATATTGTGCCGAAAATTTTGAAGGATGCGGAAGAGGAGATGGAAGAGGACGAGGATGAGGAGGAGCAGAAGGTGATTGAAGAAACGACGGCAGAAACAAAGGCTGCACTTGAGAAGATTGTGAATGTGAGATTGAGCGCTGCACAGCCGAAAAATGTGGCCAAGCAGTCGTCAGAATCGCAATATATCAAGTATAAACCGTCTCAGAAATCGGAGGCATTTAATTCTGGTGCCAAGGAGAGGATTATCAGGATGATGGAGATGCCTGTGGATCCACTTGAGCCTCCTAAGTTCAAGCATAAGCGTGTACCAAGGGCTTCTGGATCCCCACCTGTGCCGGTCATGCATTCCCCTCCTCGGCCGGTGACTGTGAAAGACCAACAGGATTGGAAAATTCCACCTTGCATTTCAAACTGGAAGAACCCGAAGGGGTATACAATTCCATTGGACAAACGTCTTGCAGCTGATGGGAGAGGCCTTCAAGATGTTCAGATCAATGATAATTTTGCAAAGCTCTCTGAGTCTTTGTATGTAGCAGAGCAGAAGGCTAGAGAGGCAGTTGCTATGAGATCTAAAGTTCAGAAGGAAATGTTGATGAAGGAGAAGGAAAAGAAAGAGCAGGAGTTGAGGGCATTAGCACAGAAAGCTCGTTCCGAGAGAACAGGTGCTGCACCCCCTGCGGCCGTTCCAATGGCTTCTGACAGAACAGCCATGGATACTGATATTAGAGGGGATTATGAGCGTCCAACAAGGGAAAAGGAAACTGATTATCCAAAGGAGACAAGGGAGGAAAGAGAAGAAAAGATGCGGCGGGAGAAAATTCGCGAGGAGCGGCGCAAAGAGAGGGAAAGGGAGAGAAGGTTGGAGGCCAAAGATGTAGCAATGGGGAAGAAAAGTAAAATTACGAGAGATAGAGATCGTGATATTAGTGAGAAAGTTGCCCTTGGCATGGCTTCTGCGGGAGCAGGCAAAGGGGGAGAGGTTATGTATGATCAGAGGCTATTCAACCAGGAGAAAGGAATGGACTCAGGGTTTGCCACTGATGACCAGTACAATGTTTATGACAAGGGCTTGTTTACTGCTCAGCCGACACTCTCAACTCTATACAGGCCTAAGAAGGATGTTGATGGTGAAATGTATGGTGGCGCTGATGAGCAGTTGGATAAGATTATGAAGATCGATCGCTTCAAACCCGACAGAGGATTTGGAGGAGCTGCTGAGAGGGCAGGGCCAAGAGATAGACCGGTCGAGTTTGAGAAGGATGCTGTTGAAGAAGCCGATCCATTTGGTCTTGACCAGTTCTTGACAGAGGTGAAGAAGGGCGGCAAGAAAGCCCTCGATAAGGTTGGAACAGGAGGGACAATGAGAGCAAGTGCCGGGTCTTCCATGAGAGATGGCTATGAAGGCGGCTCCAGCAGGTCTCGTATTGGCTTCGAAAGGGGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

610

Amino Acids

68.65

Weight (kDa)

8.87

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 188 - 347 2.3e-73 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77180 AT1G77180 AT1G77180
fragaria_vesca FvH4_1g05870 FvH4_1g05870
malus_domestica MD02G1060800.v1.1 MD15G1194300.v1.1
prunus_persica Prupe.6G190500_v2.0.a1
pyrus_communis pycom02g04990 pycom15g17390
rosa_chinensis RchiOBHm_Chr2g0091531 RchiOBHm_Chr2g0091611
rosa_laevigata RLG00000016233
rosa_multiflora Rmu_sc0002407.1_g000004
rosa_roxburghii Rroxscaffold_2G00149960
rosa_rugosa Rorug02G0018500
rosa_samantha Rh2AG063700 Rh2BG063100 Rh2CG064800 Rh2DG063200
rosa_wichuraiana Rw2G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 1788
AccB1I GGYRCC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 815
AccII CGCG 1 cut(s) 1206
AclWI GGATC 6 cut(s) 65, 647, 660, 699, 712, 1655
AcoI YGGCCR 3 cut(s) 540, 740, 1062
AcsI RAATTY 4 cut(s) 282, 396, 774, 1200
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 152, 236, 690, 1433
AfeI AGCGCT 1 cut(s) 520
AfiI CCNNNNNNNGG 6 cut(s) 259, 621, 738, 1330, 1580, 1723
AgeI ACCGGT 1 cut(s) 1624
AgsI TTSAA 9 cut(s) 157, 403, 461, 676, 792, 863, 1387, 1570, 1652
AhdI GACNNNNNGTC 1 cut(s) 262
AjnI CCWGG 2 cut(s) 271, 1389
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 6 cut(s) 19, 230, 845, 895, 1028, 1595
AluI AGCT 6 cut(s) 19, 230, 845, 895, 1028, 1595
Alw26I GTCTC 4 cut(s) 12, 588, 1154, 1806
AlwI GGATC 6 cut(s) 65, 647, 660, 699, 712, 1655
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 2 cut(s) 64, 352
Aor51HI AGCGCT 1 cut(s) 520
AoxI GGCC 8 cut(s) 250, 540, 740, 856, 1062, 1248, 1490, 1610
ApeKI GCWGC 7 cut(s) 85, 119, 485, 521, 842, 1049, 1595
ApoI RAATTY 4 cut(s) 282, 396, 774, 1200
ArsI GACNNNNNNTTYG 4 cut(s) 1397, 1429, 1568, 1600
AsiGI ACCGGT 1 cut(s) 1624
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 5 cut(s) 162, 209, 521, 1218, 1529
AspS9I GGNCC 2 cut(s) 250, 1610
AsuC2I CCSGG 3 cut(s) 215, 254, 1759
AsuHPI GGTGA 4 cut(s) 466, 757, 1523, 1705
AsuII TTCGAA 1 cut(s) 1815
AvaI CYCGRG 2 cut(s) 64, 352
AvrII CCTAGG 1 cut(s) 176
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 2 cut(s) 652, 704
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 1755
BbvI GCAGC 7 cut(s) 97, 106, 472, 508, 854, 1036, 1582
BccI CCATC 5 cut(s) 415, 631, 842, 1502, 1769
BceAI ACGGC 3 cut(s) 51, 486, 1049
BciT130I CCWGG 2 cut(s) 273, 1391
BciVI GTATCC 1 cut(s) 1090
BclI TGATCA 1 cut(s) 1372
BcnI CCSGG 3 cut(s) 215, 254, 1759
BcoDI GTCTC 4 cut(s) 12, 588, 1154, 1806
BfaI CTAG 2 cut(s) 177, 930
BfoI RGCGCY 4 cut(s) 163, 210, 522, 1530
BfuAI ACCTGC 1 cut(s) 1788
BfuI GTATCC 1 cut(s) 1090
BglII AGATCT 2 cut(s) 113, 950
BlnI CCTAGG 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 1464
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 5 cut(s) 215, 254, 273, 1391, 1759
BmeRI GACNNNNNGTC 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 64, 352
BmgT120I GGNCC 2 cut(s) 250, 1610
BmiI GGNNCC 5 cut(s) 80, 613, 654, 706, 1792
BmrFI CCNGG 5 cut(s) 215, 254, 273, 1391, 1759
BmsI GCATC 7 cut(s) 47, 292, 316, 397, 633, 1176, 1633
BoxI GACNNNNGTC 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 1755
BpmI CTGGAG 1 cut(s) 1777
Bpu1102I GCTNAGC 1 cut(s) 1464
Bpu14I TTCGAA 1 cut(s) 1815
BpuEI CTTGAG 2 cut(s) 512, 680
BpuMI CCSGG 3 cut(s) 215, 254, 1759
Bsa29I ATCGAT 1 cut(s) 1560
BsaBI GATNNNNATC 1 cut(s) 1296
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1806
BsaWI WCCGGW 2 cut(s) 289, 1624
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 1226, 1256
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 621, 738, 1330, 1580, 1723
Bse118I RCCGGY 3 cut(s) 718, 742, 1624
Bse1I ACTGG 3 cut(s) 800, 1429, 1678
Bse3DI GCAATG 1 cut(s) 1269
Bse8I GATNNNNATC 1 cut(s) 1296
BseBI CCWGG 2 cut(s) 273, 1391
BseCI ATCGAT 1 cut(s) 1560
BseGI GGATG 6 cut(s) 38, 412, 442, 639, 1507, 1648
BseJI GATNNNNATC 1 cut(s) 1296
BseLI CCNNNNNNNGG 6 cut(s) 259, 621, 738, 1330, 1580, 1723
BseMI GCAATG 1 cut(s) 1269
BseMII CTCAG 7 cut(s) 161, 245, 599, 891, 1422, 1478, 1590
BseNI ACTGG 3 cut(s) 800, 1429, 1678
BseRI GAGGAG 6 cut(s) 431, 455, 458, 726, 1223, 1605
BseX3I CGGCCG 2 cut(s) 740, 1062
BseXI GCAGC 7 cut(s) 97, 106, 472, 508, 854, 1036, 1582
BsgI GTGCAG 3 cut(s) 471, 507, 1035
Bsh1236I CGCG 1 cut(s) 1206
Bsh1285I CGRYCG 4 cut(s) 743, 1065, 1564, 1629
BshFI GGCC 8 cut(s) 252, 542, 742, 858, 1064, 1250, 1492, 1612
BshNI GGYRCC 1 cut(s) 611
BshTI ACCGGT 1 cut(s) 1624
BshVI ATCGAT 1 cut(s) 1560
BsiEI CGRYCG 4 cut(s) 743, 1065, 1564, 1629
BsiHKCI CYCGRG 2 cut(s) 64, 352
BsiSI CCGG 8 cut(s) 82, 215, 253, 290, 719, 743, 1625, 1758
BslFI GGGAC 3 cut(s) 269, 289, 1753
BslI CCNNNNNNNGG 6 cut(s) 259, 621, 738, 1330, 1580, 1723
BsmAI GTCTC 4 cut(s) 12, 588, 1154, 1806
BsmBI CGTCTC 2 cut(s) 12, 588
BsmFI GGGAC 3 cut(s) 269, 289, 1753
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 8 cut(s) 252, 542, 742, 858, 1064, 1250, 1492, 1612
Bso31I GGTCTC 1 cut(s) 1806
BsoBI CYCGRG 2 cut(s) 64, 352
Bsp119I TTCGAA 1 cut(s) 1815
Bsp1720I GCTNAGC 1 cut(s) 1464
Bsp19I CCATGG 1 cut(s) 1092
Bsp68I TCGCGA 1 cut(s) 1206
BspANI GGCC 8 cut(s) 252, 542, 742, 858, 1064, 1250, 1492, 1612
BspCNI CTCAG 7 cut(s) 160, 244, 598, 892, 1421, 1477, 1591
BspDI ATCGAT 1 cut(s) 1560
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 5 cut(s) 80, 613, 654, 706, 1792
BspMI ACCTGC 1 cut(s) 1788
BspPI GGATC 6 cut(s) 65, 647, 660, 699, 712, 1655
BspT104I TTCGAA 1 cut(s) 1815
BspT107I GGYRCC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 1806
BsrBI CCGCTC 1 cut(s) 1213
BsrDI GCAATG 1 cut(s) 1269
BsrFI RCCGGY 3 cut(s) 718, 742, 1624
BsrI ACTGG 3 cut(s) 800, 1429, 1678
BssAI RCCGGY 3 cut(s) 718, 742, 1624
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 6 cut(s) 163, 176, 615, 692, 1092, 1324
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 273, 1391
Bst4CI ACNGT 2 cut(s) 582, 751
Bst6I CTCTTC 2 cut(s) 408, 420
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstBI TTCGAA 1 cut(s) 1815
BstC8I GCNNGC 1 cut(s) 1348
BstDEI CTNAG 9 cut(s) 147, 231, 585, 669, 900, 1408, 1464, 1494, 1599
BstDSI CCRYGG 2 cut(s) 74, 1092
BstENI CCTNNNNNAGG 1 cut(s) 1721
BstF5I GGATG 6 cut(s) 38, 412, 442, 639, 1507, 1648
BstFNI CGCG 1 cut(s) 1206
BstH2I RGCGCY 4 cut(s) 163, 210, 522, 1530
BstHHI GCGC 5 cut(s) 162, 209, 521, 1218, 1529
BstMAI GTCTC 4 cut(s) 12, 588, 1154, 1806
BstMCI CGRYCG 4 cut(s) 743, 1065, 1564, 1629
BstMWI GCNNNNNNNGC 9 cut(s) 25, 326, 724, 935, 1025, 1058, 1604, 1785, 1794
BstNI CCWGG 2 cut(s) 273, 1391
BstPAI GACNNNNGTC 1 cut(s) 834
BstSCI CCNGG 5 cut(s) 213, 252, 271, 1389, 1757
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 7 cut(s) 97, 106, 472, 508, 854, 1036, 1582
BstV2I GAAGAC 1 cut(s) 1755
BstX2I RGATCY 4 cut(s) 113, 652, 704, 950
BstYI RGATCY 4 cut(s) 113, 652, 704, 950
BstZ17I GTATAC 1 cut(s) 816
BstZI CGGCCG 2 cut(s) 740, 1062
Bsu15I ATCGAT 1 cut(s) 1560
BsuI GTATCC 1 cut(s) 1090
BsuRI GGCC 8 cut(s) 252, 542, 742, 858, 1064, 1250, 1492, 1612
BsuTUI ATCGAT 1 cut(s) 1560
BtgI CCRYGG 2 cut(s) 74, 1092
BtsCI GGATG 6 cut(s) 38, 412, 442, 639, 1507, 1648
BtsIMutI CAGTG 1 cut(s) 1419
BtuMI TCGCGA 1 cut(s) 1206
BveI ACCTGC 1 cut(s) 1788
Cac8I GCNNGC 1 cut(s) 1348
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 5 cut(s) 162, 209, 521, 1218, 1529
Cfr10I RCCGGY 3 cut(s) 718, 742, 1624
Cfr13I GGNCC 2 cut(s) 250, 1610
ClaI ATCGAT 1 cut(s) 1560
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 4 cut(s) 151, 235, 689, 1432
CspAI ACCGGT 1 cut(s) 1624
CviAII CATG 5 cut(s) 247, 724, 1093, 1330, 1768
CviQI GTAC 4 cut(s) 151, 235, 689, 1432
DdeI CTNAG 9 cut(s) 147, 231, 585, 669, 900, 1408, 1464, 1494, 1599
DriI GACNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 3 cut(s) 540, 740, 1062
EagI CGGCCG 2 cut(s) 740, 1062
Eam1104I CTCTTC 2 cut(s) 408, 420
Eam1105I GACNNNNNGTC 1 cut(s) 262
EarI CTCTTC 2 cut(s) 408, 420
EciI GGCGGA 2 cut(s) 15, 122
EclXI CGGCCG 2 cut(s) 740, 1062
Eco130I CCWWGG 6 cut(s) 163, 176, 615, 692, 1092, 1324
Eco147I AGGCCT 2 cut(s) 858, 1492
Eco31I GGTCTC 1 cut(s) 1806
Eco47III AGCGCT 1 cut(s) 520
Eco52I CGGCCG 2 cut(s) 740, 1062
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 2 cut(s) 64, 352
EcoNI CCTNNNNNAGG 1 cut(s) 1721
EcoRII CCWGG 2 cut(s) 271, 1389
EcoT14I CCWWGG 6 cut(s) 163, 176, 615, 692, 1092, 1324
EcoT22I ATGCAT 1 cut(s) 729
ErhI CCWWGG 6 cut(s) 163, 176, 615, 692, 1092, 1324
Esp3I CGTCTC 2 cut(s) 12, 588
FaeI CATG 5 cut(s) 250, 727, 1096, 1333, 1771
FalI AAGNNNNNCTT 2 cut(s) 1308, 1340
FaqI GGGAC 3 cut(s) 269, 289, 1753
FatI CATG 5 cut(s) 246, 723, 1092, 1329, 1767
FauI CCCGC 2 cut(s) 1185, 1333
FbaI TGATCA 1 cut(s) 1372
FblI GTMKAC 1 cut(s) 815
FokI GGATG 6 cut(s) 25, 419, 449, 646, 1514, 1655
FspBI CTAG 2 cut(s) 177, 930
GlaI GCGC 5 cut(s) 161, 208, 520, 1217, 1528
GsuI CTGGAG 1 cut(s) 1777
HaeII RGCGCY 4 cut(s) 163, 210, 522, 1530
HaeIII GGCC 8 cut(s) 252, 542, 742, 858, 1064, 1250, 1492, 1612
HapII CCGG 8 cut(s) 82, 215, 253, 290, 719, 743, 1625, 1758
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 5 cut(s) 162, 209, 521, 1218, 1529
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 250, 727, 1096, 1333, 1771
Hin6I GCGC 5 cut(s) 160, 207, 519, 1216, 1527
HinP1I GCGC 5 cut(s) 160, 207, 519, 1216, 1527
HinfI GANTC 5 cut(s) 22, 220, 557, 902, 1406
HpaII CCGG 8 cut(s) 82, 215, 253, 290, 719, 743, 1625, 1758
HphI GGTGA 4 cut(s) 466, 757, 1523, 1705
Hpy166II GTNNAC 3 cut(s) 689, 816, 1458
Hpy188III TCNNGA 8 cut(s) 354, 631, 702, 863, 1205, 1301, 1673, 1684
Hpy8I GTNNAC 3 cut(s) 689, 816, 1458
Hpy99I CGWCG 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 582, 751
HpyCH4IV ACGT 2 cut(s) 5, 835
HpyCH4V TGCA 7 cut(s) 488, 524, 727, 786, 842, 890, 1052
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 326, 724, 935, 1025, 1058, 1604, 1785, 1794
HpyF3I CTNAG 9 cut(s) 147, 231, 585, 669, 900, 1408, 1464, 1494, 1599
HpySE526I ACGT 2 cut(s) 5, 835
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 250, 727, 1096, 1333, 1771
HspAI GCGC 5 cut(s) 160, 207, 519, 1216, 1527
Ksp22I TGATCA 1 cut(s) 1372
LmnI GCTCC 6 cut(s) 16, 445, 1210, 1343, 1592, 1796
Lsp1109I GCAGC 7 cut(s) 97, 106, 472, 508, 854, 1036, 1582
LweI GCATC 7 cut(s) 47, 292, 316, 397, 633, 1176, 1633
MaeI CTAG 2 cut(s) 177, 930
MaeII ACGT 2 cut(s) 5, 835
MaeIII GTNAC 1 cut(s) 745
MbiI CCGCTC 1 cut(s) 1213
MflI RGATCY 4 cut(s) 113, 652, 704, 950
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 8 cut(s) 282, 396, 604, 774, 819, 883, 1200, 1281
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 2 cut(s) 911, 1400
MmeI TCCRAC 4 cut(s) 1151, 1224, 1521, 1708
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 729
MscI TGGCCA 1 cut(s) 542
MseI TTAA 4 cut(s) 129, 336, 603, 1828
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 88, 845
MspI CCGG 8 cut(s) 82, 215, 253, 290, 719, 743, 1625, 1758
MspR9I CCNGG 5 cut(s) 215, 254, 273, 1391, 1759
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 2 cut(s) 273, 1391
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 9 cut(s) 25, 326, 724, 935, 1025, 1058, 1604, 1785, 1794
NciI CCSGG 3 cut(s) 215, 254, 1759
NcoI CCATGG 1 cut(s) 1092
NlaIII CATG 5 cut(s) 250, 727, 1096, 1333, 1771
NlaIV GGNNCC 5 cut(s) 80, 613, 654, 706, 1792
NmeAIII GCCGAG 1 cut(s) 718
NmuCI GTSAC 1 cut(s) 745
NruI TCGCGA 1 cut(s) 1206
NsiI ATGCAT 1 cut(s) 729
NspV TTCGAA 1 cut(s) 1815
PaeR7I CTCGAG 2 cut(s) 64, 352
PceI AGGCCT 2 cut(s) 858, 1492
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 22, 220, 557
PfoI TCCNGGA 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 1624
Ple19I CGATCG 1 cut(s) 1564
PleI GAGTC 2 cut(s) 910, 1400
PpsI GAGTC 2 cut(s) 910, 1400
PshAI GACNNNNGTC 1 cut(s) 834
Psp6I CCWGG 2 cut(s) 271, 1389
PspGI CCWGG 2 cut(s) 271, 1389
PspN4I GGNNCC 5 cut(s) 80, 613, 654, 706, 1792
PspPI GGNCC 2 cut(s) 250, 1610
PspXI VCTCGAGB 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 4 cut(s) 113, 652, 704, 950
PvuI CGATCG 1 cut(s) 1564
PvuII CAGCTG 1 cut(s) 845
RruI TCGCGA 1 cut(s) 1206
RsaI GTAC 4 cut(s) 152, 236, 690, 1433
RsaNI GTAC 4 cut(s) 151, 235, 689, 1432
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 4 cut(s) 129, 336, 603, 1828
Sau96I GGNCC 2 cut(s) 250, 1610
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 2 cut(s) 911, 1400
ScrFI CCNGG 5 cut(s) 215, 254, 273, 1391, 1759
SfaNI GCATC 7 cut(s) 47, 292, 316, 397, 633, 1176, 1633
Sfr274I CTCGAG 2 cut(s) 64, 352
SfuI TTCGAA 1 cut(s) 1815
SlaI CTCGAG 2 cut(s) 64, 352
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 4 cut(s) 64, 352, 491, 659
SmoI CTYRAG 4 cut(s) 64, 352, 491, 659
Sse9I AATT 8 cut(s) 282, 396, 604, 774, 819, 883, 1200, 1281
SseBI AGGCCT 2 cut(s) 858, 1492
SspMI CTAG 2 cut(s) 177, 930
StuI AGGCCT 2 cut(s) 858, 1492
StyD4I CCNGG 5 cut(s) 213, 252, 271, 1389, 1757
StyI CCWWGG 6 cut(s) 163, 176, 615, 692, 1092, 1324
TaaI ACNGT 2 cut(s) 582, 751
TaiI ACGT 2 cut(s) 8, 838
TaqI TCGA 7 cut(s) 65, 266, 353, 1560, 1629, 1719, 1815
TasI AATT 8 cut(s) 282, 396, 604, 774, 819, 883, 1200, 1281
TatI WGTACW 2 cut(s) 150, 1431
TauI GCSGC 6 cut(s) 31, 1064, 1192, 1216, 1707, 1791
TfiI GAWTC 3 cut(s) 22, 220, 557
Tru1I TTAA 4 cut(s) 129, 336, 603, 1828
Tru9I TTAA 4 cut(s) 129, 336, 603, 1828
TscAI CASTG 1 cut(s) 1426
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 7 cut(s) 85, 119, 485, 521, 842, 1049, 1595
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 3 cut(s) 992, 1568, 1797
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 1426
XagI CCTNNNNNAGG 1 cut(s) 1721
XapI RAATTY 4 cut(s) 282, 396, 774, 1200
XhoI CTCGAG 2 cut(s) 64, 352
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 2 cut(s) 177, 930
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.