Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

12962878 .. 12963908

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTGCATGGAAAGCGACCTTCTGGTGGCATCAAAGGTATAGAGGAGAGTCGAGTACAAGTTTCTTCGACAAATACTCAAATCACCGACGTTCAAGGACCTTCATGTAGTGCTAATGTATGTACATCAGAAGCAAACTTGGAAGATAGGCACATTCAAGAAGATTCCGGTCCCAATTTATTATGCACATCAGTAGCAAACTGTGAAGATAGGCACATTCCCTTTGAGAGCTCCGGTGCCTGGATTTTTCAAGATGAAGCGATACGCTTTTGTGTAACAACTACTGGTAAAAAAATGATAGATTCGCGAGGCCGTTGCAGAGAGAATCCAAACATCCATCAACGAGAGACGAATTTTTCACTACCAGAAAACGTTGAAGAGCATAATGTGGATAAAAATGAGGAGAATCAAAGAAGAAGATCAAAGGTTGAGAATTCATCCGAGGAGGCTGGAACTTTTGGGGGGCCATTTGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

5.26

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	1 cut(s)	307
AclI	AACGTT	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	352, 433
AfaI	GTAC	2 cut(s)	57, 124
AfiI	CCNNNNNNNGG	2 cut(s)	26, 240
AgsI	TTSAA	4 cut(s)	95, 158, 251, 377
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	341
AoxI	GGCC	2 cut(s)	310, 464
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	352, 433
AspS9I	GGNCC	3 cut(s)	98, 170, 464
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	98, 170
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	233
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	472
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	98, 170
BmgT120I	GGNCC	3 cut(s)	98, 170, 464
BmiI	GGNNCC	3 cut(s)	172, 238, 465
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	2 cut(s)	167, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 240
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	333, 437
BseLI	CCNNNNNNNGG	2 cut(s)	26, 240
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	3 cut(s)	59, 416, 458
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	312, 466
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	168, 234
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	26, 240
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	312, 466
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	419
Bsp68I	TCGCGA	1 cut(s)	307
BspANI	GGCC	2 cut(s)	312, 466
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	172, 238, 465
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	333, 437
BstFNI	CGCG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 472
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	312, 466
BtsCI	GGATG	2 cut(s)	333, 437
BtuMI	TCGCGA	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	98, 170, 464
Csp6I	GTAC	2 cut(s)	56, 123
CviAII	CATG	2 cut(s)	8, 105
CviJI	RGCY	4 cut(s)	231, 312, 449, 466
CviKI_1	RGCY	4 cut(s)	231, 312, 449, 466
CviQI	GTAC	2 cut(s)	56, 123
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	98, 170
Eco53kI	GAGCTC	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	11, 108
FaiI	YATR	6 cut(s)	9, 41, 106, 121, 184, 384
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	2 cut(s)	7, 104
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	320, 424
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	312, 466
HapII	CCGG	2 cut(s)	168, 234
Hin1II	CATG	2 cut(s)	11, 108
HinfI	GANTC	5 cut(s)	49, 164, 302, 325, 406
HpaII	CCGG	2 cut(s)	168, 234
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	130, 442
Hpy188III	TCNNGA	3 cut(s)	158, 251, 306
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	30, 111
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	90, 372
HpyCH4V	TGCA	3 cut(s)	7, 186, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 472
HpySE526I	ACGT	2 cut(s)	90, 372
Hsp92II	CATG	2 cut(s)	11, 108
Kzo9I	GATC	1 cut(s)	419
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	8 cut(s)	9, 181, 226, 247, 253, 270, 378, 435
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	2 cut(s)	90, 372
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	7 cut(s)	57, 155, 173, 218, 389, 426, 429
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	3 cut(s)	175, 352, 433
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	37, 302, 394, 436, 439
MspI	CCGG	2 cut(s)	168, 234
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	13, 472
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	2 cut(s)	11, 108
NlaIV	GGNNCC	3 cut(s)	172, 238, 465
NruI	TCGCGA	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	164, 302, 325, 406
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	172, 238, 465
PspPI	GGNCC	3 cut(s)	98, 170, 464
PspPPI	RGGWCCY	1 cut(s)	98
RruI	TCGCGA	1 cut(s)	307
RsaI	GTAC	2 cut(s)	57, 124
RsaNI	GTAC	2 cut(s)	56, 123
SacI	GAGCTC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	3 cut(s)	98, 170, 464
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	7 cut(s)	22, 40, 93, 103, 233, 375, 429
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	98, 170
Sse9I	AATT	3 cut(s)	175, 352, 433
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	93, 375
TaqI	TCGA	2 cut(s)	52, 68
TasI	AATT	3 cut(s)	175, 352, 433
TatI	WGTACW	2 cut(s)	55, 122
TfiI	GAWTC	4 cut(s)	164, 302, 325, 406
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	93, 270, 426
VpaK11BI	GGWCC	2 cut(s)	98, 170
XapI	RAATTY	2 cut(s)	352, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.