pycom15g19460

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013373
Physical Location & Seq
Reverse (-)
13862516 .. 13862965
450 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGGCTATAACCGGGACAGACTCCCAGCTCCAAACCTCAACCAAACCATCCCCAGCACCTCCACCAATCGAAGTCGAGTGCGTAAAATGCGCCTCCTGCGGGTTCACAGAGGATTGCACCCCAGCCTACATCTCCCGAGCCCGAGACCGCTATCAGGGCCGTTGGATTTGCGGGCTCTGCGTCGAGGCGGTGAAAGACGAAGTTCTACGATCAGATAGGCACATCTCCACCGAAGAAGCCCTGAACCGCCACATAAATTTCTGCAAAAAGTTCCGGTCGCAGAAAGAAACAGAGCACCCTATCTTCGCCATGGGTCGGGTTTTCCGGCGGAGCTTGGATACTCCGAGAGCCCTGAGGTCAAATTCCAGTACTACCCTCGGAGAAGTCGAAAGGGTTTGCAGCCCGCCGCTTGTTCGTTCGGGAAGTTGCTTTCCCTCTCTGTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

8.81

Isoelectric Point (pI)

83.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 25 - 114 4.1e-35 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20670
fragaria_vesca FvH4_1g08900
malus_domestica MD02G1094400.v1.1 MD15G1219300.v1.1
prunus_persica Prupe.7G196600_v2.0.a1
pyrus_communis pycom02g07470 pycom15g19460
rosa_chinensis RchiOBHm_Chr2g0095361 RchiOBHm_Chr6g0253361
rosa_laevigata RLG00000016558
rosa_multiflora Rmu_ssc0000183.1_g000036
rosa_roxburghii Rroxscaffold_2G00146440
rosa_rugosa Rorug02G0050000
rosa_samantha Rh2AG098200 Rh2BG099400 Rh2CG101400 Rh2DG099000
rosa_wichuraiana Rw2G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 99, 148, 171, 188, 247, 328, 404, 407
AcsI RAATTY 2 cut(s) 256, 361
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 99, 154, 315
AluBI AGCT 2 cut(s) 28, 333
AluI AGCT 2 cut(s) 28, 333
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 2 cut(s) 135, 141
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 2 cut(s) 256, 361
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 135, 141
AxyI CCTNAGG 1 cut(s) 353
BanII GRGCYC 3 cut(s) 142, 177, 352
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 411
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 144
BciVI GTATCC 1 cut(s) 331
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 2 cut(s) 400, 407
BlsI GCNGC 2 cut(s) 401, 408
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 135, 141
BmgT120I GGNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 309, 376
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 154, 315
Bse1I ACTGG 1 cut(s) 366
Bse21I CCTNAGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 309, 376
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 3 cut(s) 99, 154, 315
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 411
BseYI CCCAGC 3 cut(s) 24, 52, 121
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 2 cut(s) 135, 141
BsiSI CCGG 3 cut(s) 12, 274, 325
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 99, 154, 315
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 2 cut(s) 135, 141
Bsp1286I GDGCHC 4 cut(s) 142, 177, 297, 352
Bsp143I GATC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 8 cut(s) 99, 148, 171, 188, 247, 328, 404, 407
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 309, 376
BssMI GATC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 173, 404
BstDEI CTNAG 1 cut(s) 353
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 209
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 353
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 173, 404
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 310
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 3 cut(s) 142, 177, 352
Eco31I GGTCTC 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 135, 141
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 3 cut(s) 142, 177, 352
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 1 cut(s) 313
FaiI YATR 3 cut(s) 8, 254, 311
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 309
FauI CCCGC 3 cut(s) 92, 164, 411
Fnu4HI GCNGC 2 cut(s) 400, 407
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 3 cut(s) 142, 177, 352
Fsp4HI GCNGC 2 cut(s) 400, 407
FspBI CTAG 1 cut(s) 444
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 400, 407
GsaI CCCAGC 3 cut(s) 28, 56, 125
HaeIII GGCC 1 cut(s) 159
HapII CCGG 3 cut(s) 12, 274, 325
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 20
HpaII CCGG 3 cut(s) 12, 274, 325
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 214, 345, 380
Hpy188III TCNNGA 2 cut(s) 135, 420
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 117, 264, 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 2 cut(s) 33, 330
Lsp1109I GCAGC 1 cut(s) 411
MaeI CTAG 1 cut(s) 444
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 2 cut(s) 245, 295
MhlI GDGCHC 4 cut(s) 142, 177, 297, 352
MluCI AATT 2 cut(s) 256, 361
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 8 cut(s) 46, 69, 103, 103, 178, 348, 386, 445
MspI CCGG 3 cut(s) 12, 274, 325
MspR9I CCNGG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
NciI CCSGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PkrI GCNGC 2 cut(s) 401, 408
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PspFI CCCAGC 3 cut(s) 24, 52, 121
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SatI GCNGC 2 cut(s) 400, 407
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 4 cut(s) 142, 177, 297, 352
SetI ASST 6 cut(s) 30, 38, 61, 335, 359, 449
Sse9I AATT 2 cut(s) 256, 361
SsiI CCGC 8 cut(s) 99, 148, 171, 188, 247, 328, 404, 407
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 309
TaqI TCGA 4 cut(s) 69, 75, 183, 387
TasI AATT 2 cut(s) 256, 361
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 409
TseI GCWGC 1 cut(s) 399
XapI RAATTY 2 cut(s) 256, 361
XspI CTAG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.