Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006286

Physical Location & Seq

Genomic Coordinates Forward (+)

14215713 .. 14218096

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTTCCTACCTGGTAGAATGTCATTCATTTTTAACATGGAGGGAGGATACACTCATGACATCCCAACCACCTTGCATAGGAGTAAAGCTGACTGTCCACAGACAGAGGAAGCAGTAACTGTCAATGTTGATGGTTCTGTACTTGACCGAATTGCTAAAATTATGTCATATCTTCGTCTTGGATCTTCTGGGAAGGTTCTCAAGAAGAAAAAGAAGGAAAAAGATGCAAGAGGTACAGGAAAGATTTCAGTCGTTGGTAATGAGTATGATGGAGAGGATAAGTCCTTGAAGCCTGATGAAGGGATTTTGAAGAAGGAAACTAGAAGGGAGATTTTGCCACCACCCCCTCCACCCCCTCCCAGGAAAAATCACATAGATTCAAAAGCACAACAAGGCCCAACTGTTGCCAGAGTAGACGAGGATGACATTTTTGTTGGGGATGGTGTTGACTATGTTGTTCCTGGTAAAGACTTGAGTCAAAGCCCTCTCTCCGAGGACATGGAAGAGTCTCCTCGGAACAAGGAAAGAGTTTCTTATTTTGATGAACCTGCTTATGGTCCTGTCCAACCCGTCCAATCCTACGGGGTGCCTCAGGAATGGCAAGATATGAACGGATACGATGCGGCACAAACCCAAACTATGGACGGTGCCTACCAGGGAGAGTGGCCAGAATACCAATATGCTGAGCAAATGGCTTATCCTGAACAATACCTCCAGGCAAATATGGAGGGTTACGATGAACAAACAGGCTTAAACATGCAGGATCCACGCTTTATGACTCAAGAGGAGAAGGATCGGGGTTTAGGATCTGTGTTTAAGCGGGATGACCAAAGACTTCAACAATTGAGGGAGAAGGATGCCCGAGAAAAGGATCCAAACTTCATCTCGGAGAGTTATTCTGAATGTTACCCTGGTTATCAAGAATATAATCGTGAGGTGGTTGACAGTGATGATGAAGATGACTTGTCAAAAATGGACATGGGTGGACGAGCTAAGGGTCGTCTTCACCGGTGGGACTTCGAGACAGAAGAAGAATGGGCAACATACAATGAGCAAAAGGAGGCTATGCCCAAGGCAGCTTTTCAGTTTGGTGTGAAGATGCAGGATGGTCGTAAGACACGAAAGCAAAACAAGGACCAGAAGATCACTAATGACCTTCAGAAGATCAACAAGATACTTGCTAGAAAGAAGATGGAGAAGGATATGGACGGTGAGGGTGGCGGCCATTATGACGATGATGAACAGCCTGGCAAGAAGATTCGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016070 GO:0016071 GO:0022402 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033365 GO:0034501 GO:0034502 GO:0034613 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051641 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0070727 GO:0071005 GO:0071011 GO:0071173 GO:0071174 GO:0071459 GO:0071704 GO:0090304 GO:1901360 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990904 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RED_C RED_N

Protein Analysis

423

Amino Acids

48.37

Weight (kDa)

4.95

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RED_N	PF07808	1 - 71	9.6e-26	RED-like protein N-terminal region
RED_C	PF07807	299 - 404	2e-43	RED-like protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26460
fragaria_vesca	FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440 FvH4_1g09440
malus_domestica	MD02G1102700.v1.1 MD15G1223900.v1.1
prunus_persica	Prupe.7G191600_v2.0.a1 Prupe.7G191600_v2.0.a1
pyrus_communis	pycom02g08040 pycom15g19810
rosa_chinensis	RchiOBHm_Chr2g0095991
rosa_laevigata	RLG00000016615 RLG00000016631
rosa_multiflora	Rmu_sc0002497.1_g000011 Rmu_sc0018414.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145880
rosa_rugosa	Rorug02G0055700 Rorug02G0055800 Rorug02G0065300
rosa_samantha	Rh2AG103600 Rh2BG105100 Rh2CG107600 Rh2DG105500
rosa_wichuraiana	Rw2G007900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	586, 647
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	3 cut(s)	623, 820, 1221
AclWI	GGATC	7 cut(s)	190, 758, 771, 801, 814, 866, 879
AcoI	YGGCCR	2 cut(s)	665, 1222
AcuI	CTGAAG	1 cut(s)	1142
AfaI	GTAC	2 cut(s)	141, 235
AfiI	CCNNNNNNNGG	6 cut(s)	78, 299, 360, 554, 640, 868
AgeI	ACCGGT	1 cut(s)	1008
AgsI	TTSAA	4 cut(s)	289, 310, 381, 839
AjnI	CCWGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
AluBI	AGCT	3 cut(s)	89, 992, 1079
AluI	AGCT	3 cut(s)	89, 992, 1079
Alw26I	GTCTC	2 cut(s)	513, 1016
AlwI	GGATC	7 cut(s)	190, 758, 771, 801, 814, 866, 879
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	3 cut(s)	394, 665, 1222
ApeKI	GCWGC	1 cut(s)	1076
AsiGI	ACCGGT	1 cut(s)	1008
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	395, 557, 1135
AsuHPI	GGTGA	2 cut(s)	998, 1223
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	2 cut(s)	557, 1135
AxyI	CCTNAGG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	667
BamHI	GGATCC	2 cut(s)	763, 871
BanI	GGYRCC	2 cut(s)	586, 647
BbsI	GAAGAC	1 cut(s)	995
BbvI	GCAGC	1 cut(s)	1088
BccI	CCATC	5 cut(s)	125, 263, 434, 1100, 1186
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
BciVI	GTATCC	2 cut(s)	41, 608
BcoDI	GTCTC	2 cut(s)	513, 1016
BfaI	CTAG	2 cut(s)	321, 1182
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	2 cut(s)	41, 608
BisI	GCNGC	3 cut(s)	624, 1077, 1222
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	3 cut(s)	625, 1078, 1223
Bme1390I	CCNGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
Bme18I	GGWCC	2 cut(s)	557, 1135
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	3 cut(s)	395, 557, 1135
BmiI	GGNNCC	4 cut(s)	588, 649, 765, 873
BmrFI	CCNGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
BmsI	GCATC	4 cut(s)	214, 610, 847, 1089
BoxI	GACNNNNGTC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	995
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	993
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	3 cut(s)	185, 493, 765
BsaJI	CCNNGG	6 cut(s)	359, 492, 512, 655, 910, 1071
BsaWI	WCCGGW	1 cut(s)	1008
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 299, 360, 554, 640, 868
Bse118I	RCCGGY	1 cut(s)	1008
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
BseDI	CCNNGG	6 cut(s)	359, 492, 512, 655, 910, 1071
BseGI	GGATG	6 cut(s)	60, 427, 445, 829, 862, 1111
BseLI	CCNNNNNNNGG	6 cut(s)	78, 299, 360, 554, 640, 868
BseMII	CTCAG	2 cut(s)	605, 675
BseRI	GAGGAG	2 cut(s)	501, 800
BseXI	GCAGC	1 cut(s)	1088
BshFI	GGCC	3 cut(s)	396, 667, 1224
BshNI	GGYRCC	2 cut(s)	586, 647
BshTI	ACCGGT	1 cut(s)	1008
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	1009
BslFI	GGGAC	1 cut(s)	1028
BslI	CCNNNNNNNGG	6 cut(s)	78, 299, 360, 554, 640, 868
BsmAI	GTCTC	2 cut(s)	513, 1016
BsmFI	GGGAC	1 cut(s)	1028
BsnI	GGCC	3 cut(s)	396, 667, 1224
BsoBI	CYCGRG	1 cut(s)	861
Bsp143I	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	3 cut(s)	623, 820, 1221
BspANI	GGCC	3 cut(s)	396, 667, 1224
BspCNI	CTCAG	2 cut(s)	604, 676
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	588, 649, 765, 873
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	7 cut(s)	190, 758, 771, 801, 814, 866, 879
BspT107I	GGYRCC	2 cut(s)	586, 647
BsrFI	RCCGGY	1 cut(s)	1008
BssAI	RCCGGY	1 cut(s)	1008
BssECI	CCNNGG	6 cut(s)	359, 492, 512, 655, 910, 1071
BssMI	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
BssT1I	CCWWGG	1 cut(s)	1071
Bst2UI	CCWGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
Bst4CI	ACNGT	6 cut(s)	95, 121, 403, 647, 947, 1211
Bst6I	CTCTTC	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	591, 684, 993
BstENI	CCTNNNNNAGG	2 cut(s)	76, 297
BstF5I	GGATG	6 cut(s)	60, 427, 445, 829, 862, 1111
BstKTI	GATC	7 cut(s)	185, 766, 796, 809, 874, 1146, 1167
BstMAI	GTCTC	2 cut(s)	513, 1016
BstMBI	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
BstNI	CCWGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
BstNSI	RCATGY	1 cut(s)	760
BstPAI	GACNNNNGTC	1 cut(s)	474
BstSCI	CCNGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
BstV1I	GCAGC	1 cut(s)	1088
BstV2I	GAAGAC	1 cut(s)	995
BstX2I	RGATCY	4 cut(s)	182, 763, 806, 871
BstYI	RGATCY	4 cut(s)	182, 763, 806, 871
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	2 cut(s)	41, 608
BsuRI	GGCC	3 cut(s)	396, 667, 1224
BtsCI	GGATG	6 cut(s)	60, 427, 445, 829, 862, 1111
BtsIMutI	CAGTG	1 cut(s)	952
BveI	ACCTGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	3 cut(s)	395, 557, 1135
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	140, 234
CspAI	ACCGGT	1 cut(s)	1008
CviAII	CATG	5 cut(s)	37, 56, 499, 757, 979
CviQI	GTAC	2 cut(s)	140, 234
DdeI	CTNAG	3 cut(s)	591, 684, 993
DpnI	GATC	7 cut(s)	184, 765, 795, 808, 873, 1145, 1166
DpnII	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
EaeI	YGGCCR	2 cut(s)	665, 1222
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	1071
Eco47I	GGWCC	2 cut(s)	557, 1135
Eco57I	CTGAAG	1 cut(s)	1142
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	861
EcoNI	CCTNNNNNAGG	2 cut(s)	76, 297
EcoRII	CCWGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
EcoT14I	CCWWGG	1 cut(s)	1071
ErhI	CCWWGG	1 cut(s)	1071
FaeI	CATG	5 cut(s)	40, 59, 502, 760, 982
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	5 cut(s)	36, 55, 498, 756, 978
FauI	CCCGC	1 cut(s)	813
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	624, 1077, 1222
FokI	GGATG	6 cut(s)	47, 434, 452, 836, 869, 1118
Fsp4HI	GCNGC	3 cut(s)	624, 1077, 1222
FspBI	CTAG	2 cut(s)	321, 1182
GluI	GCNGC	3 cut(s)	624, 1077, 1222
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	396, 667, 1224
HapII	CCGG	1 cut(s)	1009
Hin1II	CATG	5 cut(s)	40, 59, 502, 760, 982
HincII	GTYRAC	2 cut(s)	448, 943
HindII	GTYRAC	2 cut(s)	448, 943
HinfI	GANTC	5 cut(s)	377, 475, 506, 778, 1258
HpaII	CCGG	1 cut(s)	1009
HphI	GGTGA	2 cut(s)	998, 1223
Hpy166II	GTNNAC	5 cut(s)	98, 415, 448, 943, 986
Hpy188I	TCNGA	5 cut(s)	493, 516, 889, 901, 1161
Hpy188III	TCNNGA	8 cut(s)	56, 202, 593, 701, 782, 920, 932, 1021
Hpy8I	GTNNAC	5 cut(s)	98, 415, 448, 943, 986
HpyAV	CCTTC	9 cut(s)	187, 208, 293, 307, 318, 784, 847, 1166, 1192
HpyCH4III	ACNGT	6 cut(s)	95, 121, 403, 647, 947, 1211
HpyCH4V	TGCA	4 cut(s)	76, 227, 760, 1102
HpyF3I	CTNAG	3 cut(s)	591, 684, 993
Hsp92II	CATG	5 cut(s)	40, 59, 502, 760, 982
Kzo9I	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
Lsp1109I	GCAGC	1 cut(s)	1088
LweI	GCATC	4 cut(s)	214, 610, 847, 1089
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	2 cut(s)	321, 1182
MaeIII	GTNAC	3 cut(s)	115, 731, 905
MalI	GATC	7 cut(s)	184, 765, 795, 808, 873, 1145, 1166
MboI	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
MfeI	CAATTG	1 cut(s)	842
MflI	RGATCY	4 cut(s)	182, 763, 806, 871
MlsI	TGGCCA	1 cut(s)	667
MluCI	AATT	3 cut(s)	150, 159, 842
MluNI	TGGCCA	1 cut(s)	667
MlyI	GAGTC	3 cut(s)	484, 515, 772
MmeI	TCCRAC	1 cut(s)	589
Mox20I	TGGCCA	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	667
MseI	TTAA	3 cut(s)	33, 752, 816
Msp20I	TGGCCA	1 cut(s)	667
MspI	CCGG	1 cut(s)	1009
MspR9I	CCNGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
MunI	CAATTG	1 cut(s)	842
MvaI	CCWGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
NdeII	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
NlaIII	CATG	5 cut(s)	40, 59, 502, 760, 982
NlaIV	GGNNCC	4 cut(s)	588, 649, 765, 873
NspI	RCATGY	1 cut(s)	760
PagI	TCATGA	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	377, 1258
PflMI	CCANNNNNTGG	1 cut(s)	640
PinAI	ACCGGT	1 cut(s)	1008
PkrI	GCNGC	3 cut(s)	625, 1078, 1223
PleI	GAGTC	3 cut(s)	483, 514, 772
PpsI	GAGTC	3 cut(s)	483, 514, 772
PshAI	GACNNNNGTC	1 cut(s)	474
Psp6I	CCWGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
PspGI	CCWGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
PspN4I	GGNNCC	4 cut(s)	588, 649, 765, 873
PspPI	GGNCC	3 cut(s)	395, 557, 1135
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	4 cut(s)	182, 763, 806, 871
RsaI	GTAC	2 cut(s)	141, 235
RsaNI	GTAC	2 cut(s)	140, 234
SaqAI	TTAA	3 cut(s)	33, 752, 816
SatI	GCNGC	3 cut(s)	624, 1077, 1222
Sau3AI	GATC	7 cut(s)	182, 763, 793, 806, 871, 1143, 1164
Sau96I	GGNCC	3 cut(s)	395, 557, 1135
SchI	GAGTC	3 cut(s)	484, 515, 772
ScrFI	CCNGG	7 cut(s)	12, 361, 462, 656, 716, 912, 1248
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	4 cut(s)	214, 610, 847, 1089
SgrAI	CRCCGGYG	1 cut(s)	1008
SinI	GGWCC	2 cut(s)	557, 1135
SmlI	CTYRAG	3 cut(s)	200, 472, 780
SmoI	CTYRAG	3 cut(s)	200, 472, 780
Sse9I	AATT	3 cut(s)	150, 159, 842
SsiI	CCGC	3 cut(s)	623, 820, 1221
SspMI	CTAG	2 cut(s)	321, 1182
StyD4I	CCNGG	7 cut(s)	10, 359, 460, 654, 714, 910, 1246
StyI	CCWWGG	1 cut(s)	1071
TaaI	ACNGT	6 cut(s)	95, 121, 403, 647, 947, 1211
TaqI	TCGA	2 cut(s)	1020, 1261
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	150, 159, 842
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	2 cut(s)	626, 1224
TfiI	GAWTC	2 cut(s)	377, 1258
Tru1I	TTAA	3 cut(s)	33, 752, 816
Tru9I	TTAA	3 cut(s)	33, 752, 816
TscAI	CASTG	1 cut(s)	952
TseI	GCWGC	1 cut(s)	1076
TspDTI	ATGAA	8 cut(s)	16, 312, 558, 623, 753, 871, 969, 1254
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	952
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	557, 1135
XagI	CCTNNNNNAGG	2 cut(s)	76, 297
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	2 cut(s)	321, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.