Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Reverse (-)

14336962 .. 14338038

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTTTCTTCGCTGCTCGCATTTGATCCGATGGGTTTCTTCGTCGTCGACGACGCGTCCTCGTCGGGCTTGATACTGAGCCACGTACTGTACAAAGCGGCTTTTGTAATTGCTTTGATGAGATGGGTTGTGTTCTGGGCGCTCAGACTCAGACAAACACTCTCCTCCTCCTCCGCTTCCTCCACCGCCGAGGAGGGATTTGATTTCCTACAGGCGGAGTACGATAAAGAATCTTGCTCCTCTTCTTCCTCCGCTTCTACCCAACTGATCAGGGACTGTCTGACTCAGACCACCTTTGGAGAAATCACAGAGCGTAGAGGGAGTTACGGAATCAACGGCGGCGGCGACTGCGACACGTGCGCGGTGTGCTTGAGCCAGCTGGAGATGGGGGACGAGGTCAGGGAGATGCGGAACTGCTGCCACGTGTTCCACACCGAGTGCATTGACAGGTGGCTCGAGTATAATGATGATCATCATCACCACCACCATCATGATAATCATGATGAGGATAATCAAAAGACTTGCCCACTCTGCAGGACTCCATTGCTGACGTCATCGCAGATACAGAGCCTGAGCTGGGATCACAGCAGATCGCAGCCCATATTTTTTTTTAAAGGAATACGATATTTGATATTCATTGCAAACAAAGCAATACAAGTACAAACAGACAACAAACTGAGAATAGTATGCATATTGCGCCTCAATGAAACCTTGTCGGAGTTTTCAATCCGGTCTACGGAAAAAAAGTGTCCCGCACAACGAAATGATCTATCCCCAAATATCAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

264

Amino Acids

29.86

Weight (kDa)

5.7

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 155	9.3e-10	Ring finger domain
zf-RING_11	PF17123	120 - 148	1.9e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	554
AccI	GTMKAC	2 cut(s)	48, 734
AccII	CGCG	2 cut(s)	56, 362
AclWI	GGATC	2 cut(s)	20, 588
AcvI	CACGTG	2 cut(s)	357, 424
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	4 cut(s)	87, 92, 221, 660
AfiI	CCNNNNNNNGG	3 cut(s)	214, 577, 736
AflIII	ACRYGT	3 cut(s)	54, 354, 423
AgsI	TTSAA	1 cut(s)	726
AhdI	GACNNNNNGTC	1 cut(s)	55
AluBI	AGCT	2 cut(s)	379, 576
AluI	AGCT	2 cut(s)	379, 576
AlwI	GGATC	2 cut(s)	20, 588
AlwNI	CAGNNNCTG	2 cut(s)	276, 571
Ama87I	CYCGRG	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	13, 417, 595
AspLEI	GCGC	3 cut(s)	142, 362, 699
AsuHPI	GGTGA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	455
BbrPI	CACGTG	2 cut(s)	357, 424
BbvI	GCAGC	2 cut(s)	404, 607
BccI	CCATC	4 cut(s)	25, 117, 379, 495
BceAI	ACGGC	1 cut(s)	352
BclI	TGATCA	2 cut(s)	267, 469
BfmI	CTRYAG	2 cut(s)	209, 532
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
BlsI	GCNGC	6 cut(s)	15, 100, 341, 344, 419, 597
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	391
BsaAI	YACGTR	3 cut(s)	85, 357, 424
BsaBI	GATNNNNATC	2 cut(s)	471, 474
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	729
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 577, 736
Bse3DI	GCAATG	2 cut(s)	542, 636
Bse8I	GATNNNNATC	2 cut(s)	471, 474
BseDI	CCNNGG	1 cut(s)	189
BseJI	GATNNNNATC	2 cut(s)	471, 474
BseLI	CCNNNNNNNGG	3 cut(s)	214, 577, 736
BseMI	GCAATG	2 cut(s)	542, 636
BseMII	CTCAG	6 cut(s)	68, 157, 163, 299, 563, 668
BseRI	GAGGAG	5 cut(s)	154, 157, 160, 206, 229
BseXI	GCAGC	2 cut(s)	404, 607
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	2 cut(s)	56, 362
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	730
BslFI	GGGAC	3 cut(s)	287, 404, 735
BslI	CCNNNNNNNGG	3 cut(s)	214, 577, 736
BsmFI	GGGAC	3 cut(s)	287, 404, 735
BsoBI	CYCGRG	1 cut(s)	455
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
BspCNI	CTCAG	6 cut(s)	69, 156, 162, 298, 564, 669
BspFNI	CGCG	2 cut(s)	56, 362
BspHI	TCATGA	2 cut(s)	490, 499
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	2 cut(s)	20, 588
BsrDI	GCAATG	2 cut(s)	542, 636
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
BssNI	GRCGYC	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	90, 278
Bst6I	CTCTTC	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	3 cut(s)	85, 357, 424
BstC8I	GCNNGC	2 cut(s)	18, 377
BstDEI	CTNAG	6 cut(s)	77, 143, 149, 285, 572, 677
BstFNI	CGCG	2 cut(s)	56, 362
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	142, 362, 699
BstKTI	GATC	6 cut(s)	28, 270, 472, 583, 593, 769
BstMBI	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	348, 357, 366, 531, 647, 696
BstSFI	CTRYAG	2 cut(s)	209, 532
BstUI	CGCG	2 cut(s)	56, 362
BstV1I	GCAGC	2 cut(s)	404, 607
BtgZI	GCGATG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	18, 377
CaiI	CAGNNNCTG	2 cut(s)	276, 571
CciI	TCATGA	2 cut(s)	490, 499
CfoI	GCGC	3 cut(s)	142, 362, 699
CseI	GACGC	2 cut(s)	45, 62
Csp6I	GTAC	4 cut(s)	86, 91, 220, 659
CviAII	CATG	2 cut(s)	491, 500
CviJI	RGCY	9 cut(s)	69, 81, 101, 375, 379, 454, 570, 576, 598
CviKI_1	RGCY	9 cut(s)	69, 81, 101, 375, 379, 454, 570, 576, 598
CviQI	GTAC	4 cut(s)	86, 91, 220, 659
DdeI	CTNAG	6 cut(s)	77, 143, 149, 285, 572, 677
DpnI	GATC	6 cut(s)	27, 269, 471, 582, 592, 768
DpnII	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
DraI	TTTAAA	1 cut(s)	613
DraIII	CACNNNGTG	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	230
Eco72I	CACGTG	2 cut(s)	357, 424
Eco88I	CYCGRG	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	692
FaeI	CATG	2 cut(s)	494, 503
FaiI	YATR	7 cut(s)	462, 492, 501, 602, 688, 692, 790
FaqI	GGGAC	3 cut(s)	287, 404, 735
FatI	CATG	2 cut(s)	490, 499
FauI	CCCGC	1 cut(s)	760
FbaI	TGATCA	2 cut(s)	267, 469
FblI	GTMKAC	2 cut(s)	48, 734
Fnu4HI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
Fsp4HI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
GlaI	GCGC	3 cut(s)	141, 361, 698
GluI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	1 cut(s)	730
HgaI	GACGC	2 cut(s)	45, 62
HhaI	GCGC	3 cut(s)	142, 362, 699
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	2 cut(s)	494, 503
Hin6I	GCGC	3 cut(s)	140, 360, 697
HinP1I	GCGC	3 cut(s)	140, 360, 697
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	147, 230, 283, 330, 538
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	49, 735
Hpy188I	TCNGA	6 cut(s)	30, 146, 152, 282, 288, 718
Hpy188III	TCNNGA	2 cut(s)	491, 500
Hpy8I	GTNNAC	2 cut(s)	49, 735
Hpy99I	CGWCG	5 cut(s)	47, 50, 53, 56, 67
HpyCH4III	ACNGT	2 cut(s)	90, 278
HpyCH4IV	ACGT	4 cut(s)	84, 356, 423, 551
HpyCH4V	TGCA	4 cut(s)	441, 534, 641, 690
HpyF10VI	GCNNNNNNNGC	6 cut(s)	348, 357, 366, 531, 647, 696
HpyF3I	CTNAG	6 cut(s)	77, 143, 149, 285, 572, 677
HpySE526I	ACGT	4 cut(s)	84, 356, 423, 551
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	2 cut(s)	494, 503
HspAI	GCGC	3 cut(s)	140, 360, 697
Ksp22I	TGATCA	2 cut(s)	267, 469
Kzo9I	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	404, 607
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	4 cut(s)	84, 356, 423, 551
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	6 cut(s)	27, 269, 471, 582, 592, 768
MboI	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
MboII	GAAGA	3 cut(s)	31, 234, 237
MluCI	AATT	1 cut(s)	108
MluI	ACGCGT	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	141, 277, 532
MmeI	TCCRAC	1 cut(s)	696
Mph1103I	ATGCAT	1 cut(s)	692
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	730
MvnI	CGCG	2 cut(s)	56, 362
MwoI	GCNNNNNNNGC	6 cut(s)	348, 357, 366, 531, 647, 696
NdeII	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
NlaIII	CATG	2 cut(s)	494, 503
NmeAIII	GCCGAG	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	692
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	2 cut(s)	490, 499
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 342
PfeI	GAWTC	2 cut(s)	230, 330
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	15, 100, 341, 344, 419, 597
PleI	GAGTC	3 cut(s)	141, 277, 532
PmaCI	CACGTG	2 cut(s)	357, 424
PmlI	CACGTG	2 cut(s)	357, 424
PpsI	GAGTC	3 cut(s)	141, 277, 532
Ppu21I	YACGTR	3 cut(s)	85, 357, 424
PspCI	CACGTG	2 cut(s)	357, 424
PspFI	CCCAGC	1 cut(s)	576
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	536
PstNI	CAGNNNCTG	2 cut(s)	276, 571
PsyI	GACNNNGTC	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	4 cut(s)	87, 92, 221, 660
RsaNI	GTAC	4 cut(s)	86, 91, 220, 659
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
Sau3AI	GATC	6 cut(s)	25, 267, 469, 580, 590, 766
SchI	GAGTC	3 cut(s)	141, 277, 532
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	2 cut(s)	209, 532
Sfr274I	CTCGAG	1 cut(s)	455
SgrDI	CGTCGACG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	370, 455
SmoI	CTYRAG	2 cut(s)	370, 455
Sse9I	AATT	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	90, 278
TaiI	ACGT	4 cut(s)	87, 359, 426, 554
TaqI	TCGA	2 cut(s)	48, 456
TasI	AATT	1 cut(s)	108
TatI	WGTACW	2 cut(s)	90, 658
TauI	GCSGC	3 cut(s)	101, 342, 345
TfiI	GAWTC	2 cut(s)	230, 330
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseI	GCWGC	3 cut(s)	13, 417, 595
TspDTI	ATGAA	2 cut(s)	625, 720
TspGWI	ACGGA	2 cut(s)	342, 752
Tth111I	GACNNNGTC	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	2 cut(s)	48, 734
ZraI	GACGTC	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.