pycom15g21670

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008648
Physical Location & Seq
Reverse (-)
15711490 .. 15714330
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGGCGGAAGGAAGAGAAGGGGATTGGGAGTGCAGTGGATGCAGGAACAGAAACTACGCCTTCAGATCCTTCTGCAATCGCTGCAAGCAGCCTCGCCTTCTCGTCGACACCAAAACCCCCGCCGACTCTAAGTGGCTCCCTCGCATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAAAAGTGCAAAAAGTGCGGGCAACCAAAGGAGGTAGCGGCAATGCCAGCGGTTGCAATCCCCGGAGCTTCTCTCCCAACTTATTCACATTATTTTGCCAGGGCCCAAGGAGGACGGGACCAAAGGATGATGATGGGCAATGGTGCTCCCCCACATTCGCTTCCTCTGAACTGGTCTATACCAGGGGCTGATAAGTTTGGAGTTCAGCCGGCTCCTACTTGGCCTGTAGGTGGAAACCATAATGCTGGACTTCCACATGCAAATTCTACTAATCAGCTTCTTTCAGTTCCAAAAGGATGGCGCAGTGGTGATTGGTTATGCAGTTGCGGTTTCCATAATTATTCGTCTCGAACACAGTGCAAAAAATGCGATGCTTTTCCACCATCTCTTGGAATGAAGCGATTAGCATCCGAAGAGCTTGTTCATGACTGGGATAACAAGAGACTGAATGTAGGACATACAGTTGGGCAGCAGCTATCCTATCCTGGATTTGAGCAAGTGGTAGGGACCAGTGGTAACCCTGCAACTGGACCTTACGCTCCTTATCATCCCAATGTAAGCTCAGGTGTGGCTCCGAATTTGCAAGTACCCATGTCATTCACACAGCAAGCAATGACACCTACACTTCTTGGAAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCAACAATCATAATTATGCATCTCGATTAAACTGCAATAGGTGCAAGACTGAAAGAGATCCAACCGCTCAGCCAGTCAACACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

321

Amino Acids

35.21

Weight (kDa)

9.18

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 5 - 32 2.3e-06 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 48 - 76 1.4e-06 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 283 - 310 4.2e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 941
AccI GTMKAC 1 cut(s) 105
AciI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
AclWI GGATC 3 cut(s) 60, 164, 926
AcsI RAATTY 2 cut(s) 457, 772
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
AgeI ACCGGT 1 cut(s) 164
AjnI CCWGG 3 cut(s) 293, 376, 679
AluBI AGCT 5 cut(s) 263, 472, 613, 670, 756
AluI AGCT 5 cut(s) 263, 472, 613, 670, 756
Alw21I GWGCWC 2 cut(s) 343, 869
Alw26I GTCTC 2 cut(s) 546, 631
Alw44I GTGCAC 1 cut(s) 865
AlwI GGATC 3 cut(s) 60, 164, 926
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 2 cut(s) 297, 416
ApaI GGGCCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 865
ApeKI GCWGC 4 cut(s) 81, 88, 664, 667
ApoI RAATTY 2 cut(s) 457, 772
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 5 cut(s) 297, 298, 313, 702, 725
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 3 cut(s) 313, 702, 725
BaeGI GKGCMC 2 cut(s) 301, 869
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 343, 869
BbvI GCAGC 4 cut(s) 68, 100, 676, 679
BccI CCATC 3 cut(s) 322, 486, 586
BcgI CGANNNNNNTGC 4 cut(s) 534, 568, 888, 922
BciT130I CCWGG 3 cut(s) 295, 378, 681
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 546, 631
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 5 cut(s) 82, 89, 234, 665, 668
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 5 cut(s) 83, 90, 235, 666, 669
Bme1390I CCNGG 4 cut(s) 258, 295, 378, 681
Bme18I GGWCC 3 cut(s) 313, 702, 725
BmgT120I GGNCC 5 cut(s) 297, 298, 313, 702, 725
BmiI GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
BmrFI CCNGG 4 cut(s) 258, 295, 378, 681
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
BmuI ACTGGG 1 cut(s) 634
BplI GAGNNNNNCTC 2 cut(s) 252, 284
Bpu10I CCTNAGC 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 942
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 601
BsaJI CCNNGG 4 cut(s) 256, 294, 301, 377
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
Bse118I RCCGGY 2 cut(s) 164, 403
Bse1I ACTGG 5 cut(s) 371, 629, 705, 727, 947
Bse3DI GCAATG 4 cut(s) 243, 340, 813, 848
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 3 cut(s) 295, 378, 681
BseDI CCNNGG 4 cut(s) 256, 294, 301, 377
BseGI GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
BseMI GCAATG 4 cut(s) 243, 340, 813, 848
BseMII CTCAG 2 cut(s) 771, 956
BseNI ACTGG 5 cut(s) 371, 629, 705, 727, 947
BseSI GKGCMC 2 cut(s) 301, 869
BseXI GCAGC 4 cut(s) 68, 100, 676, 679
BsgI GTGCAG 2 cut(s) 52, 145
BshFI GGCC 2 cut(s) 299, 418
BshTI ACCGGT 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 343, 869
BsiSI CCGG 3 cut(s) 165, 258, 404
BslFI GGGAC 2 cut(s) 326, 715
BslI CCNNNNNNNGG 4 cut(s) 146, 425, 584, 722
BsmAI GTCTC 2 cut(s) 546, 631
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 326, 715
BsnI GGCC 2 cut(s) 299, 418
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 3 cut(s) 301, 343, 869
Bsp143I GATC 3 cut(s) 65, 156, 931
Bsp1720I GCTNAGC 1 cut(s) 942
BspACI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
BspANI GGCC 2 cut(s) 299, 418
BspCNI CTCAG 2 cut(s) 770, 955
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
BspPI GGATC 3 cut(s) 60, 164, 926
BspQI GCTCTTC 1 cut(s) 603
BsrBI CCGCTC 1 cut(s) 941
BsrDI GCAATG 4 cut(s) 243, 340, 813, 848
BsrFI RCCGGY 2 cut(s) 164, 403
BsrI ACTGG 5 cut(s) 371, 629, 705, 727, 947
BssAI RCCGGY 2 cut(s) 164, 403
BssECI CCNNGG 4 cut(s) 256, 294, 301, 377
BssMI GATC 3 cut(s) 65, 156, 931
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 295, 378, 681
Bst4CI ACNGT 2 cut(s) 552, 658
Bst6I CTCTTC 2 cut(s) 7, 603
BstAPI GCANNNNNTGC 7 cut(s) 39, 81, 168, 210, 561, 873, 915
BstC8I GCNNGC 5 cut(s) 86, 215, 243, 405, 804
BstDEI CTNAG 3 cut(s) 129, 757, 942
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 3 cut(s) 68, 159, 934
BstMAI GTCTC 2 cut(s) 546, 631
BstMBI GATC 3 cut(s) 65, 156, 931
BstMWI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
BstNI CCWGG 3 cut(s) 295, 378, 681
BstNSI RCATGY 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 4 cut(s) 256, 293, 376, 679
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 2 cut(s) 301, 869
BstV1I GCAGC 4 cut(s) 68, 100, 676, 679
BstX2I RGATCY 3 cut(s) 65, 156, 931
BstXI CCANNNNNNTGG 2 cut(s) 440, 492
BstYI RGATCY 3 cut(s) 65, 156, 931
BsuRI GGCC 2 cut(s) 299, 418
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 6 cut(s) 44, 327, 497, 602, 742, 867
BtsI GCAGTG 2 cut(s) 40, 505
BtsIMutI CAGTG 4 cut(s) 40, 505, 557, 712
Cac8I GCNNGC 5 cut(s) 86, 215, 243, 405, 804
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 2 cut(s) 164, 403
Cfr13I GGNCC 5 cut(s) 297, 298, 313, 702, 725
Csp6I GTAC 1 cut(s) 782
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 4 cut(s) 452, 620, 787, 958
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 3 cut(s) 129, 757, 942
DpnI GATC 3 cut(s) 67, 158, 933
DpnII GATC 3 cut(s) 65, 156, 931
Eam1104I CTCTTC 2 cut(s) 7, 603
EarI CTCTTC 2 cut(s) 7, 603
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 313, 702, 725
Eco57I CTGAAG 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 297
EcoO65I GGTNACC 1 cut(s) 710
EcoRII CCWGG 3 cut(s) 293, 376, 679
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 2 cut(s) 190, 895
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 4 cut(s) 455, 623, 790, 961
FaqI GGGAC 2 cut(s) 326, 715
FatI CATG 4 cut(s) 451, 619, 786, 957
FauI CCCGC 2 cut(s) 127, 206
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 82, 89, 234, 665, 668
FokI GGATG 6 cut(s) 51, 334, 504, 589, 729, 874
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 5 cut(s) 82, 89, 234, 665, 668
GlaI GCGC 1 cut(s) 497
GluI GCNGC 5 cut(s) 82, 89, 234, 665, 668
HaeIII GGCC 2 cut(s) 299, 418
HapII CCGG 3 cut(s) 165, 258, 404
HhaI GCGC 1 cut(s) 498
Hin1II CATG 4 cut(s) 455, 623, 790, 961
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 2 cut(s) 106, 952
HindII GTYRAC 2 cut(s) 106, 952
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 165, 258, 404
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 106, 867, 952
Hpy188I TCNGA 4 cut(s) 65, 363, 607, 771
Hpy188III TCNNGA 4 cut(s) 192, 543, 620, 897
Hpy8I GTNNAC 3 cut(s) 106, 867, 952
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 11, 70, 79, 107
HpyCH4III ACNGT 2 cut(s) 552, 658
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
HpyF3I CTNAG 3 cut(s) 129, 757, 942
Hsp92II CATG 4 cut(s) 455, 623, 790, 961
HspAI GCGC 1 cut(s) 496
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 65, 156, 931
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 7 cut(s) 141, 260, 346, 412, 739, 772, 833
Lsp1109I GCAGC 4 cut(s) 68, 100, 676, 679
LweI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
MaeIII GTNAC 1 cut(s) 710
MalI GATC 3 cut(s) 67, 158, 933
MbiI CCGCTC 1 cut(s) 941
MboI GATC 3 cut(s) 65, 156, 931
MboII GAAGA 2 cut(s) 24, 620
MflI RGATCY 3 cut(s) 65, 156, 931
MhlI GDGCHC 3 cut(s) 301, 343, 869
MluCI AATT 6 cut(s) 181, 457, 532, 772, 871, 886
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 959
MnlI CCTC 5 cut(s) 102, 150, 220, 299, 369
Mph1103I ATGCAT 2 cut(s) 190, 895
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 1 cut(s) 902
MslI CAYNNNNRTG 2 cut(s) 747, 888
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 3 cut(s) 165, 258, 404
MspR9I CCNGG 4 cut(s) 258, 295, 378, 681
MvaI CCWGG 3 cut(s) 295, 378, 681
MwoI GCNNNNNNNGC 8 cut(s) 39, 81, 168, 210, 242, 561, 873, 915
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 65, 156, 931
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 4 cut(s) 455, 623, 790, 961
NlaIV GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
NsiI ATGCAT 2 cut(s) 190, 895
NspI RCATGY 1 cut(s) 455
PagI TCATGA 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 405
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 679
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 5 cut(s) 83, 90, 235, 666, 669
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 293, 376, 679
PspEI GGTNACC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 293, 376, 679
PspN4I GGNNCC 6 cut(s) 137, 299, 314, 408, 703, 768
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 5 cut(s) 297, 298, 313, 702, 725
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 3 cut(s) 65, 156, 931
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
RseI CAYNNNNRTG 2 cut(s) 747, 888
SalI GTCGAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 1 cut(s) 902
SatI GCNGC 5 cut(s) 82, 89, 234, 665, 668
Sau3AI GATC 3 cut(s) 65, 156, 931
Sau96I GGNCC 5 cut(s) 297, 298, 313, 702, 725
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 4 cut(s) 258, 295, 378, 681
SduI GDGCHC 3 cut(s) 301, 343, 869
SfaNI GCATC 6 cut(s) 29, 153, 197, 556, 611, 902
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 3 cut(s) 313, 702, 725
SmiMI CAYNNNNRTG 2 cut(s) 747, 888
Sse9I AATT 6 cut(s) 181, 457, 532, 772, 871, 886
SsiI CCGC 7 cut(s) 5, 120, 213, 233, 245, 522, 939
StyD4I CCNGG 4 cut(s) 256, 293, 376, 679
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 552, 658
TaqI TCGA 3 cut(s) 105, 544, 898
TasI AATT 6 cut(s) 181, 457, 532, 772, 871, 886
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 4 cut(s) 40, 505, 557, 712
TseI GCWGC 4 cut(s) 81, 88, 664, 667
TspDTI ATGAA 2 cut(s) 605, 608
TspRI CASTG 4 cut(s) 40, 505, 557, 712
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 865
VpaK11BI GGWCC 3 cut(s) 313, 702, 725
XapI RAATTY 2 cut(s) 457, 772
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 190, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.