Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016238

Physical Location & Seq

Genomic Coordinates Reverse (-)

16686056 .. 16686434

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTTTAGTCAAGGAAATAAACAATAACAACGAAATTGCTCATGAAGTCAGCTCTATAAATTCCAAGGCAAATCATAGAGGTCAAAATTCTCTCAACACACCCACAAATCCCTTCCAAACACTTTTGAACTATTTCTCTCAAAACCCCAACATGTTTTTCCTTTTTGTTCCAGTGATGGTTCTGTACGGTGTTGACAAAGCAACAGCGCACATTCAGCATTTGATCAAATGGATCATGGACTGTTACTCGGAATCGTGGAAGCTCATACTCTGCTGCCAAAATGACACCCGCGTCATTGAATCGGTGAAAAACCGGTTATTACATGGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2 NmrA

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

7.78

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12990
malus_domestica	MD02G1144400.v1.1 MD15G1258100.v1.1
prunus_persica	Prupe.7G157200_v2.0.a1
pyrus_communis	pycom15g22580
rosa_chinensis	RchiOBHm_Chr2g0101071
rosa_laevigata	RLG00000017049
rosa_multiflora	Rmu_sc0007698.1_g000014
rosa_roxburghii	Rroxscaffold_2G00141580
rosa_rugosa	Rorug02G0096900
rosa_samantha	Rh2AG142900 Rh2BG148000 Rh2CG149500 Rh2DG148500
rosa_wichuraiana	Rw2G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccII	CGCG	1 cut(s)	294
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	61, 88
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	153
AgeI	ACCGGT	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	130, 302
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	54, 265
AluI	AGCT	2 cut(s)	54, 265
AlwI	GGATC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	61, 88
AsiGI	ACCGGT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	225
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	294
BshTI	ACCGGT	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	225, 234
BspACI	CCGC	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	43
BspPI	GGATC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	225, 234
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	191, 245, 333
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	228, 237
BstMBI	GATC	2 cut(s)	225, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	157
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	315
CviAII	CATG	4 cut(s)	44, 154, 238, 326
CviJI	RGCY	2 cut(s)	54, 265
CviKI_1	RGCY	2 cut(s)	54, 265
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	2 cut(s)	227, 236
DpnII	GATC	2 cut(s)	225, 234
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	47, 157, 241, 329
FaiI	YATR	7 cut(s)	45, 59, 78, 155, 239, 269, 327
FatI	CATG	4 cut(s)	43, 153, 237, 325
FauI	CCCGC	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	277
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	277
HapII	CCGG	1 cut(s)	316
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	4 cut(s)	47, 157, 241, 329
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	254, 302
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	191, 245, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	47, 157, 241, 329
HspAI	GCGC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	225, 234
LpnPI	CCDG	2 cut(s)	186, 329
Lsp1109I	GCAGC	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	227, 236
MboI	GATC	2 cut(s)	225, 234
MluCI	AATT	3 cut(s)	36, 61, 88
MnlI	CCTC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	134
MspI	CCGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	225, 234
NlaIII	CATG	4 cut(s)	47, 157, 241, 329
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	254, 302
PinAI	ACCGGT	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	225, 234
Sau96I	GGNCC	1 cut(s)	329
SetI	ASST	3 cut(s)	56, 85, 267
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	36, 61, 88
SsiI	CCGC	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	191, 245, 333
TasI	AATT	3 cut(s)	36, 61, 88
TfiI	GAWTC	2 cut(s)	254, 302
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	61, 88
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.