Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009569

Physical Location & Seq

Genomic Coordinates Reverse (-)

16940581 .. 16946252

Gene Structure 5672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGGTACACAGTGCCTATGATTCCTTCGAGCTCATCGGTGACTGCCCGACGAAGATCGAAGCCATCGAATCCTACGGTCCGAAGCTCCTCCTCGGCTGCTCCGATGGATCTCTCAAAATCTACGCTCCAGACTCCTCCGGCTCCGACCGCACTCCGCCGTCTGATTACCACGCGCACAAGCTCCAGAAGGAACCGTACGCGCTTGAGAGGAACGTCGCCGGTTTCTCAAAGAAGCCCTTGGTTTCAATGGAGGTCCTGGAATCCCGAGAGCTCCTCCTTTCCCTCTCGGAGTCGATTGCGTTTCACGGCCTCCCGAACCTGGGCACCATCGCCGTGATCGCGAAGGCGAAGGGCGCCAATGTCTACTCGTGGGACGACCGCAGAGGATTCCTCTGCTTCGCGAGGCAGAAGCGGGTCTGTATTTTCCGGCACGACGGTGGACGAGGGTTTGTGGAAGTGAAGGAATTTGGGGTCCCAGATGTGGTGAAGTCGATGTCATGGTGTGGAGAAAATATATGCATAGGGATTAGAAGAGAGTATATGATACTGAATTCTACAAATGGTGCGTTGTCTGAGGTGTTTCCTTCGGGGAGAATAGCGCCGCCGCTGGTGGTTTCTCTTCCTTCCGGAGAGCTTCTTCTCGGAAAGGATAACATTGGGGTTTTTGTGGACCAAAACGGGAAGCTTTGTCAAGAAGGCAGGGTTTGCTGGTCGGATCCCCCGAATGTTGTTGTTATTCAGAAGCCATATGCAATTGCTTTATTACCAAGATATGTTGAGGTTCGGTCGCTCCGGGATCCCTATCCTTTGATACAGACGGTTGTTCTTAGAAATGCTTGTCGTATTCTACAGAGCAACAATGCTGTAATTGTTGCATTAGAGAATGCTGTTTATGGTCTCTTCCCTGTTCCTCTTGGTGCCCAGATTGTACAATTAACAGCATCTGGTGATTTTGATGAAGCATTGGCGTTATGTAAGATGCTTCCTCCAGAAGAAGCAAGTCTTAGAGCTGCAAAGGAGGCCTCAATTCATATGAGATATGCTCATCATCTTTTTGATAATGGGGCCTACGAAGATGCCATGGAGCACTTTTTAGCATCTCAAGTAGACATAACCTATGTTCTTTCTTTGTATCCATCTTTGGTTCTTCCTAAGACAACTATGGTTGCTGTGCCAGAGAAGCTAATGGATATTTCTGGGGATTCCCTCTCAAGAGGTTCGTCTGGTTTATCAGATGATATGGAACACTCTCTTCCATCTGTACTGGAATCTGAGGAGAGTGCAGCACTCGAGTCCAAGAAAATGAGCCATAACACTCTCATGGCTCTCGTAAAGTTCTTACAGAAAAAAAGATATGGCATAATTGAAAAGGCCACTGCTGAGGGGACAGAAGAGGTTGTTTTAGATGCTGTTGGAGACAATTTTGTGTCCTATGAATCTAGGCTTAAGAAATCAAACAAGGGGCGTGGCAGCATTCCAGTTACCTCTGGTGCTAGGGAGATGGCTGCAATCCTGGATACAGCACTACTCCAAGCTCTACTTCTTACTGGACAGGCTTCAGTGGCTTTGGAATTACTGAAAGGTCTTAACTACTGTGATGTAAAAATATGCAAGGAGATACTCCAGGAAAATAATCATTACGCTGCTTTGTTAGAACTTTACAGGTGCAATTCAATGCACCAAGAAGCTCTAAAACTTTTGCATCAATTGGTAGAAGATTCTAAATCTAACCAAGTGCAGACTGAACTGATCCAAAAGTTAAAGCCTGAGTCAATTGTTGAATATCTCAAGCCTCTGTGTGGGACTGATCCCATGCTTGTCCTGGAGTATTCAATGCTTGTTCTTGAAAGCTGTCCAACACAGACAATTCAGCTCTTTTTGAATGGCAATATTCCAGCAGACCTGGTCAACTCTTACTTGAAGCAGCATGCTCCAAACATGCAGGCCACATACTTAGAGCTTATGCTTGCAATGGATGAAAACGGGGTCTCTGGAAATCTGCAAAATGAAATGGTACATATCTATCTATCAGAAGTACTTGATTGGTATGCAGATTTAAGCGCTCAGCAGAAATGGGATGAGCAAACTTACTCCTCAACAAGAAAGAAATTATTGTCTGCTTTAGAGAGTATCTCAGGATATAGTCCGGAGGCTTTGTTGAAACGTCTTCCGGCGGATGCTTTATACGAAGAGCGTGCAATGTTGTTGGGAAAAATGAACCAACATGAGCTTGCCTTATCTCTCTATGTTCACAAGCTTCATGTTCCCAAGCTGGCACTGTCCTATTGTGATCGAGTGTATGATTCCTTAATTCATCAACCATCTTCAAGATCTTCCGGCAATATATACCTAACTCTATTACAAATTTATCTTAATCCGAGGAAAACAACCAAGAACTTTGAGAAACGAATTACAAATTTAGTATCACCTCAGAATATCAGTACACCAAAGGTTGGTTCTGCAAATACAGTTAAAAGTAAAGGAGGTCGTGGTGCTAAAAAAATTGCTGCAATAGAGGTGGCACCTGACATAAGAGTCAGTCAAAGTAGCACTGACAGTGGCAGGAGTGATGGAGATGCAGAGGAATATGGCGAGGAAGGAGGGTCAACAATCATGCTTGATGAGGTCCTCGATTTGTTGAGCCAAAGGTGGGACAGAATTAATGGAGCTCAGGCACTTAAACTTTTGCCAAGGGAAACTAAGCTACAGCACTTGCTTCCATTTATGGGACCTCTGTTGAGAAAATCCAGTGAAGCGTACAGGAACCTTTCAGTGATCAAGAGTTTGAGGCAAAGTGAGAACCTGCAGGTTAAAGATGAACTCTATGAACAAAGGAAAGGGGTGGTGAAGATCACCAGTGATAGCATGTGCTCCCTTTGCAGGAAGAAAATAGGAACAAGTGTCTTTGCCGTGTATCCAAACGGGAAAACGTTAGTGCACTTTGTGTGCTTTAGAGACTCGCAAAGTATGAAAACTGTGGGCAGAGGATCGCCGCTATGGAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

1003

Amino Acids

111.04

Weight (kDa)

6.55

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNH	PF00780	29 - 278	2.6e-20	CNH domain
Clathrin	PF00637	502 - 596	5.3e-09	Region in Clathrin and VPS
Vps39_1	PF10366	505 - 615	5.6e-25	Vacuolar sorting protein 39 domain 1
zf-Vps39_C	PF10367	948 - 986	1.8e-17	Vacuolar sorting protein 39 C-terminal zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36630 AT4G36630
fragaria_vesca	FvH4_1g13311
malus_domestica	MD02G1147600.v1.1 MD15G1261900.v1.1
prunus_persica	Prupe.7G154500_v2.0.a1
pyrus_communis	pycom02g11660 pycom15g22910
rosa_chinensis	RchiOBHm_Chr2g0101111 RchiOBHm_Chr2g0101581
rosa_laevigata	RLG00000017092
rosa_multiflora	Rmu_sc0006153.1_g000006 Rmu_sc0019613.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141170
rosa_rugosa	Rorug02G0097300 Rorug02G0100900
rosa_samantha	Rh2AG148200 Rh2BG153600 Rh2CG149800 Rh2CG153900 Rh2DG153900
rosa_wichuraiana	Rw2G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2534
Acc36I	ACCTGC	2 cut(s)	2797, 2811
AccB1I	GGYRCC	4 cut(s)	323, 353, 917, 2521
AccB7I	CCANNNNNTGG	1 cut(s)	2453
AccI	GTMKAC	2 cut(s)	363, 1107
AccII	CGCG	4 cut(s)	173, 200, 341, 401
AccIII	TCCGGA	2 cut(s)	626, 2146
AciI	CCGC	8 cut(s)	148, 155, 379, 412, 602, 605, 2174, 2993
AclI	AACGTT	1 cut(s)	2930
AclWI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1744, 1802, 2995
AcsI	RAATTY	4 cut(s)	464, 550, 2364, 2416
AcuI	CTGAAG	1 cut(s)	1542
AcyI	GRCGYC	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	2944
AfaI	GTAC	8 cut(s)	6, 197, 930, 1263, 2016, 2037, 2443, 2759
AfeI	AGCGCT	1 cut(s)	2062
AfiI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1799, 2453, 2650, 2726, 2880
AflII	CTTAAG	1 cut(s)	1445
AjnI	CCWGG	6 cut(s)	255, 318, 1512, 1623, 1821, 1902
AjuI	GAANNNNNNNTTGG	4 cut(s)	1524, 1556, 2440, 2472
AleI	CACNNNNGTG	1 cut(s)	435
Alw21I	GWGCWC	6 cut(s)	33, 273, 1089, 2671, 2873, 2940
Alw26I	GTCTC	4 cut(s)	902, 1410, 1993, 2949
Alw44I	GTGCAC	1 cut(s)	2936
AlwI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1744, 1802, 2995
AlwNI	CAGNNNCTG	1 cut(s)	944
Ama87I	CYCGRG	2 cut(s)	264, 1289
Aor13HI	TCCGGA	2 cut(s)	626, 2146
Aor51HI	AGCGCT	1 cut(s)	2062
AoxI	GGCC	5 cut(s)	307, 1020, 1065, 1371, 1944
ApaLI	GTGCAC	1 cut(s)	2936
ApeKI	GCWGC	8 cut(s)	96, 1010, 1283, 1470, 1505, 1643, 1924, 2507
ApoI	RAATTY	4 cut(s)	464, 550, 2364, 2416
AseI	ATTAAT	1 cut(s)	2661
AspLEI	GCGC	5 cut(s)	175, 202, 356, 601, 2063
AspS9I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2626, 2729
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	6 cut(s)	50, 496, 959, 2418, 2845, 2857
AvaI	CYCGRG	2 cut(s)	264, 1289
AvaII	GGWCC	6 cut(s)	77, 253, 472, 670, 2626, 2729
BaeGI	GKGCMC	3 cut(s)	326, 922, 2940
BamHI	GGATCC	2 cut(s)	715, 796
BanI	GGYRCC	4 cut(s)	323, 353, 917, 2521
BanII	GRGCYC	3 cut(s)	33, 273, 2671
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	2159
Bbv12I	GWGCWC	6 cut(s)	33, 273, 1089, 2671, 2873, 2940
BbvCI	CCTCAGC	1 cut(s)	1380
BbvI	GCAGC	8 cut(s)	83, 997, 1295, 1482, 1492, 1630, 1936, 2494
BccI	CCATC	8 cut(s)	71, 98, 335, 1144, 1264, 1495, 2329, 2564
BceAI	ACGGC	4 cut(s)	142, 317, 322, 2894
BcgI	CGANNNNNNTGC	2 cut(s)	2177, 2211
BciT130I	CCWGG	6 cut(s)	257, 320, 1514, 1625, 1823, 1904
BciVI	GTATCC	3 cut(s)	1143, 1510, 2925
BclI	TGATCA	1 cut(s)	2775
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	4 cut(s)	902, 1410, 1993, 2949
BfaI	CTAG	2 cut(s)	1440, 1494
BfmI	CTRYAG	3 cut(s)	848, 2705, 2804
BfoI	RGCGCY	3 cut(s)	357, 602, 2064
BfrI	CTTAAG	1 cut(s)	1445
BfuAI	ACCTGC	2 cut(s)	2797, 2811
BfuI	GTATCC	3 cut(s)	1143, 1510, 2925
BglII	AGATCT	1 cut(s)	2330
BlpI	GCTNAGC	1 cut(s)	2064
BmcAI	AGTACT	1 cut(s)	2037
Bme1390I	CCNGG	7 cut(s)	257, 320, 794, 1514, 1625, 1823, 1904
Bme18I	GGWCC	6 cut(s)	77, 253, 472, 670, 2626, 2729
BmeT110I	CYCGRG	2 cut(s)	264, 1289
BmgT120I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2626, 2729
BmrFI	CCNGG	7 cut(s)	257, 320, 794, 1514, 1625, 1823, 1904
BmsI	GCATC	8 cut(s)	950, 969, 1066, 1106, 1396, 1711, 2167, 2566
BpiI	GAAGAC	1 cut(s)	2159
BplI	GAGNNNNNCTC	8 cut(s)	258, 290, 375, 407, 1027, 1059, 2117, 2149
BpmI	CTGGAG	5 cut(s)	111, 167, 972, 1607, 1844
Bpu10I	CCTNAGC	2 cut(s)	1380, 2670
Bpu1102I	GCTNAGC	1 cut(s)	2064
BpuEI	CTTGAG	4 cut(s)	224, 1086, 1195, 1772
BpuMI	CCSGG	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	902, 1993
BsaJI	CCNNGG	6 cut(s)	91, 237, 319, 1080, 2378, 2690
BsaWI	WCCGGW	2 cut(s)	626, 2146
BsaXI	ACNNNNNCTCC	2 cut(s)	2141, 2171
Bsc4I	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1799, 2453, 2650, 2726, 2880
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	5 cut(s)	1269, 1478, 1552, 2748, 2856
Bse3DI	GCAATG	2 cut(s)	1977, 2205
Bse8I	GATNNNNATC	1 cut(s)	801
BseAI	TCCGGA	2 cut(s)	626, 2146
BseBI	CCWGG	6 cut(s)	257, 320, 1514, 1625, 1823, 1904
BseDI	CCNNGG	6 cut(s)	91, 237, 319, 1080, 2378, 2690
BseGI	GGATG	3 cut(s)	1981, 2083, 2182
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1799, 2453, 2650, 2726, 2880
BseMI	GCAATG	2 cut(s)	1977, 2205
BseMII	CTCAG	8 cut(s)	564, 1263, 1371, 1758, 2078, 2148, 2444, 2684
BseNI	ACTGG	5 cut(s)	1269, 1478, 1552, 2748, 2856
BseRI	GAGGAG	6 cut(s)	77, 80, 124, 263, 1289, 2083
BseSI	GKGCMC	3 cut(s)	326, 922, 2940
BseXI	GCAGC	8 cut(s)	83, 997, 1295, 1482, 1492, 1630, 1936, 2494
BsgI	GTGCAG	2 cut(s)	1302, 1757
Bsh1236I	CGCG	4 cut(s)	173, 200, 341, 401
Bsh1285I	CGRYCG	3 cut(s)	148, 379, 788
BshFI	GGCC	5 cut(s)	309, 1022, 1067, 1373, 1946
BshNI	GGYRCC	4 cut(s)	323, 353, 917, 2521
BsiEI	CGRYCG	3 cut(s)	148, 379, 788
BsiHKAI	GWGCWC	6 cut(s)	33, 273, 1089, 2671, 2873, 2940
BsiHKCI	CYCGRG	2 cut(s)	264, 1289
BsiSI	CCGG	8 cut(s)	138, 219, 427, 627, 793, 2147, 2171, 2337
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	6 cut(s)	386, 458, 1399, 1816, 2666, 2742
BslI	CCNNNNNNNGG	8 cut(s)	319, 320, 481, 1799, 2453, 2650, 2726, 2880
BsmAI	GTCTC	4 cut(s)	902, 1410, 1993, 2949
BsmFI	GGGAC	6 cut(s)	386, 458, 1399, 1816, 2666, 2742
BsmI	GAATGC	2 cut(s)	889, 1473
BsnI	GGCC	5 cut(s)	309, 1022, 1067, 1373, 1946
Bso31I	GGTCTC	2 cut(s)	902, 1993
BsoBI	CYCGRG	2 cut(s)	264, 1289
Bsp1286I	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2671, 2873, 2940
Bsp13I	TCCGGA	2 cut(s)	626, 2146
Bsp1407I	TGTACA	1 cut(s)	928
Bsp1720I	GCTNAGC	1 cut(s)	2064
Bsp19I	CCATGG	1 cut(s)	1080
Bsp68I	TCGCGA	2 cut(s)	341, 401
BspACI	CCGC	8 cut(s)	148, 155, 379, 412, 602, 605, 2174, 2993
BspANI	GGCC	5 cut(s)	309, 1022, 1067, 1373, 1946
BspCNI	CTCAG	8 cut(s)	565, 1264, 1372, 1759, 2077, 2147, 2443, 2683
BspEI	TCCGGA	2 cut(s)	626, 2146
BspFNI	CGCG	4 cut(s)	173, 200, 341, 401
BspMAI	CTGCAG	1 cut(s)	2808
BspMI	ACCTGC	2 cut(s)	2797, 2811
BspPI	GGATC	8 cut(s)	115, 710, 723, 791, 804, 1744, 1802, 2995
BspQI	GCTCTTC	1 cut(s)	2184
BspT107I	GGYRCC	4 cut(s)	323, 353, 917, 2521
BspTI	CTTAAG	1 cut(s)	1445
BspTNI	GGTCTC	2 cut(s)	902, 1993
BsrDI	GCAATG	2 cut(s)	1977, 2205
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	5 cut(s)	1269, 1478, 1552, 2748, 2856
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	6 cut(s)	91, 237, 319, 1080, 2378, 2690
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	367
BssT1I	CCWWGG	3 cut(s)	237, 1080, 2690
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	6 cut(s)	257, 320, 1514, 1625, 1823, 1904
Bst6I	CTCTTC	6 cut(s)	526, 624, 905, 1257, 1386, 2184
BstACI	GRCGYC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	1445
BstAPI	GCANNNNNTGC	1 cut(s)	705
BstAUI	TGTACA	1 cut(s)	928
BstC8I	GCNNGC	6 cut(s)	1929, 1944, 1968, 2196, 2232, 2274
BstDSI	CCRYGG	1 cut(s)	1080
BstF5I	GGATG	3 cut(s)	1981, 2083, 2182
BstFNI	CGCG	4 cut(s)	173, 200, 341, 401
BstH2I	RGCGCY	3 cut(s)	357, 602, 2064
BstHHI	GCGC	5 cut(s)	175, 202, 356, 601, 2063
BstMAI	GTCTC	4 cut(s)	902, 1410, 1993, 2949
BstMCI	CGRYCG	3 cut(s)	148, 379, 788
BstMWI	GCNNNNNNNGC	9 cut(s)	147, 338, 353, 705, 1019, 1180, 1562, 2877, 3001
BstNI	CCWGG	6 cut(s)	257, 320, 1514, 1625, 1823, 1904
BstNSI	RCATGY	3 cut(s)	1931, 1942, 2869
BstSCI	CCNGG	7 cut(s)	255, 318, 792, 1512, 1623, 1821, 1902
BstSFI	CTRYAG	3 cut(s)	848, 2705, 2804
BstSLI	GKGCMC	3 cut(s)	326, 922, 2940
BstUI	CGCG	4 cut(s)	173, 200, 341, 401
BstV1I	GCAGC	8 cut(s)	83, 997, 1295, 1482, 1492, 1630, 1936, 2494
BstV2I	GAAGAC	1 cut(s)	2159
BstX2I	RGATCY	4 cut(s)	107, 715, 796, 2330
BstYI	RGATCY	4 cut(s)	107, 715, 796, 2330
BsuI	GTATCC	3 cut(s)	1143, 1510, 2925
BsuRI	GGCC	5 cut(s)	309, 1022, 1067, 1373, 1946
BtgI	CCRYGG	1 cut(s)	1080
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	1981, 2083, 2182
BtsI	GCAGTG	1 cut(s)	1374
BtsIMutI	CAGTG	9 cut(s)	16, 1374, 1566, 2276, 2550, 2563, 2755, 2778, 2863
BtuMI	TCGCGA	2 cut(s)	341, 401
BveI	ACCTGC	2 cut(s)	2797, 2811
Cac8I	GCNNGC	6 cut(s)	1929, 1944, 1968, 2196, 2232, 2274
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	5 cut(s)	175, 202, 356, 601, 2063
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2626, 2729
CpoI	CGGWCCG	1 cut(s)	77
CsiI	ACCWGGT	1 cut(s)	1902
Csp6I	GTAC	8 cut(s)	5, 196, 929, 1262, 2015, 2036, 2442, 2758
CspCI	CAANNNNNGTGG	4 cut(s)	1447, 1482, 2499, 2534
CspI	CGGWCCG	1 cut(s)	77
CviQI	GTAC	8 cut(s)	5, 196, 929, 1262, 2015, 2036, 2442, 2758
DinI	GGCGCC	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	2944
DrdI	GACNNNNNNGTC	1 cut(s)	2534
DseDI	GACNNNNNNGTC	1 cut(s)	2534
Eam1104I	CTCTTC	6 cut(s)	526, 624, 905, 1257, 1386, 2184
EarI	CTCTTC	6 cut(s)	526, 624, 905, 1257, 1386, 2184
EciI	GGCGGA	2 cut(s)	144, 2189
Ecl136II	GAGCTC	3 cut(s)	31, 271, 2669
Eco130I	CCWWGG	3 cut(s)	237, 1080, 2690
Eco147I	AGGCCT	1 cut(s)	1022
Eco24I	GRGCYC	3 cut(s)	33, 273, 2671
Eco31I	GGTCTC	2 cut(s)	902, 1993
Eco47I	GGWCC	6 cut(s)	77, 253, 472, 670, 2626, 2729
Eco47III	AGCGCT	1 cut(s)	2062
Eco53kI	GAGCTC	3 cut(s)	31, 271, 2669
Eco57I	CTGAAG	1 cut(s)	1542
Eco88I	CYCGRG	2 cut(s)	264, 1289
EcoICRI	GAGCTC	3 cut(s)	31, 271, 2669
EcoO109I	RGGNCCY	5 cut(s)	253, 472, 1065, 2626, 2729
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	6 cut(s)	255, 318, 1512, 1623, 1821, 1902
EcoT14I	CCWWGG	3 cut(s)	237, 1080, 2690
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	3 cut(s)	33, 273, 2671
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	3 cut(s)	237, 1080, 2690
FalI	AAGNNNNNCTT	6 cut(s)	221, 253, 987, 1019, 1524, 1556
FaqI	GGGAC	6 cut(s)	386, 458, 1399, 1816, 2666, 2742
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	2 cut(s)	748, 1032
FbaI	TGATCA	1 cut(s)	2775
FblI	GTMKAC	2 cut(s)	363, 1107
FokI	GGATG	3 cut(s)	1988, 2090, 2189
FriOI	GRGCYC	3 cut(s)	33, 273, 2671
FspBI	CTAG	2 cut(s)	1440, 1494
GlaI	GCGC	5 cut(s)	174, 201, 355, 600, 2062
GsuI	CTGGAG	5 cut(s)	111, 167, 972, 1607, 1844
HaeII	RGCGCY	3 cut(s)	357, 602, 2064
HaeIII	GGCC	5 cut(s)	309, 1022, 1067, 1373, 1946
HapII	CCGG	8 cut(s)	138, 219, 427, 627, 793, 2147, 2171, 2337
HhaI	GCGC	5 cut(s)	175, 202, 356, 601, 2063
Hin1I	GRCGYC	1 cut(s)	354
Hin6I	GCGC	5 cut(s)	173, 200, 354, 599, 2061
HinP1I	GCGC	5 cut(s)	173, 200, 354, 599, 2061
HincII	GTYRAC	2 cut(s)	1909, 2607
HindII	GTYRAC	2 cut(s)	1909, 2607
HindIII	AAGCTT	2 cut(s)	683, 2255
HpaII	CCGG	8 cut(s)	138, 219, 427, 627, 793, 2147, 2171, 2337
HphI	GGTGA	6 cut(s)	50, 496, 959, 2418, 2845, 2857
Hpy99I	CGWCG	3 cut(s)	52, 218, 437
HpyAV	CCTTC	9 cut(s)	34, 181, 337, 343, 454, 594, 633, 689, 2591
HpyCH4IV	ACGT	3 cut(s)	213, 2164, 2930
HpyF10VI	GCNNNNNNNGC	9 cut(s)	147, 338, 353, 705, 1019, 1180, 1562, 2877, 3001
HpySE526I	ACGT	3 cut(s)	213, 2164, 2930
Hsp92I	GRCGYC	1 cut(s)	354
HspAI	GCGC	5 cut(s)	173, 200, 354, 599, 2061
KasI	GGCGCC	1 cut(s)	353
KflI	GGGWCCC	1 cut(s)	472
Kpn2I	TCCGGA	2 cut(s)	626, 2146
Ksp22I	TGATCA	1 cut(s)	2775
LguI	GCTCTTC	1 cut(s)	2184
Lsp1109I	GCAGC	8 cut(s)	83, 997, 1295, 1482, 1492, 1630, 1936, 2494
LweI	GCATC	8 cut(s)	950, 969, 1066, 1106, 1396, 1711, 2167, 2566
MabI	ACCWGGT	1 cut(s)	1902
MaeI	CTAG	2 cut(s)	1440, 1494
MaeII	ACGT	3 cut(s)	213, 2164, 2930
MaeIII	GTNAC	2 cut(s)	38, 1480
MfeI	CAATTG	3 cut(s)	753, 1706, 1773
MflI	RGATCY	4 cut(s)	107, 715, 796, 2330
MhlI	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2671, 2873, 2940
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	6 cut(s)	125, 299, 1301, 1778, 2544, 2951
MmeI	TCCRAC	4 cut(s)	168, 693, 1393, 1880
Mph1103I	ATGCAT	1 cut(s)	521
MroI	TCCGGA	2 cut(s)	626, 2146
MslI	CAYNNNNRTG	3 cut(s)	332, 435, 1319
MspA1I	CMGCKG	1 cut(s)	607
MspCI	CTTAAG	1 cut(s)	1445
MspI	CCGG	8 cut(s)	138, 219, 427, 627, 793, 2147, 2171, 2337
MspR9I	CCNGG	7 cut(s)	257, 320, 794, 1514, 1625, 1823, 1904
MunI	CAATTG	3 cut(s)	753, 1706, 1773
Mva1269I	GAATGC	2 cut(s)	889, 1473
MvaI	CCWGG	6 cut(s)	257, 320, 1514, 1625, 1823, 1904
MvnI	CGCG	4 cut(s)	173, 200, 341, 401
MwoI	GCNNNNNNNGC	9 cut(s)	147, 338, 353, 705, 1019, 1180, 1562, 2877, 3001
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	794
NcoI	CCATGG	1 cut(s)	1080
NdeI	CATATG	2 cut(s)	748, 1032
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	38
NruI	TCGCGA	2 cut(s)	341, 401
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	3 cut(s)	1931, 1942, 2869
OliI	CACNNNNGTG	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	1931
PaeR7I	CTCGAG	1 cut(s)	1289
PceI	AGGCCT	1 cut(s)	1022
PciSI	GCTCTTC	1 cut(s)	2184
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 99, 719
PctI	GAATGC	2 cut(s)	889, 1473
PfeI	GAWTC	9 cut(s)	20, 68, 260, 387, 1202, 1268, 1436, 1718, 2303
Pfl23II	CGTACG	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	1904
PflMI	CCANNNNNTGG	1 cut(s)	2453
PfoI	TCCNGGA	5 cut(s)	255, 792, 1512, 1623, 1821
PleI	GAGTC	6 cut(s)	125, 298, 1300, 1777, 2543, 2951
PluTI	GGCGCC	1 cut(s)	357
PpsI	GAGTC	6 cut(s)	125, 298, 1300, 1777, 2543, 2951
PpuMI	RGGWCCY	4 cut(s)	253, 472, 2626, 2729
PshBI	ATTAAT	1 cut(s)	2661
Psp124BI	GAGCTC	3 cut(s)	33, 273, 2671
Psp1406I	AACGTT	1 cut(s)	2930
Psp5II	RGGWCCY	4 cut(s)	253, 472, 2626, 2729
Psp6I	CCWGG	6 cut(s)	255, 318, 1512, 1623, 1821, 1902
PspGI	CCWGG	6 cut(s)	255, 318, 1512, 1623, 1821, 1902
PspLI	CGTACG	1 cut(s)	195
PspPI	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2626, 2729
PspPPI	RGGWCCY	4 cut(s)	253, 472, 2626, 2729
PspXI	VCTCGAGB	1 cut(s)	1289
PstI	CTGCAG	1 cut(s)	2808
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	4 cut(s)	107, 715, 796, 2330
PsyI	GACNNNGTC	1 cut(s)	1904
RruI	TCGCGA	2 cut(s)	341, 401
RsaI	GTAC	8 cut(s)	6, 197, 930, 1263, 2016, 2037, 2443, 2759
RsaNI	GTAC	8 cut(s)	5, 196, 929, 1262, 2015, 2036, 2442, 2758
RseI	CAYNNNNRTG	3 cut(s)	332, 435, 1319
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SacI	GAGCTC	3 cut(s)	33, 273, 2671
SapI	GCTCTTC	1 cut(s)	2184
Sau96I	GGNCC	7 cut(s)	77, 253, 472, 670, 1065, 2626, 2729
SbfI	CCTGCAGG	1 cut(s)	2808
ScaI	AGTACT	1 cut(s)	2037
SchI	GAGTC	6 cut(s)	125, 299, 1301, 1778, 2544, 2951
ScrFI	CCNGG	7 cut(s)	257, 320, 794, 1514, 1625, 1823, 1904
SdaI	CCTGCAGG	1 cut(s)	2808
SduI	GDGCHC	8 cut(s)	33, 273, 326, 922, 1089, 2671, 2873, 2940
SexAI	ACCWGGT	1 cut(s)	1902
SfaNI	GCATC	8 cut(s)	950, 969, 1066, 1106, 1396, 1711, 2167, 2566
SfcI	CTRYAG	3 cut(s)	848, 2705, 2804
SfoI	GGCGCC	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	1289
SinI	GGWCC	6 cut(s)	77, 253, 472, 670, 2626, 2729
SlaI	CTCGAG	1 cut(s)	1289
SmiMI	CAYNNNNRTG	3 cut(s)	332, 435, 1319
SmlI	CTYRAG	6 cut(s)	203, 1101, 1210, 1289, 1445, 1787
SmoI	CTYRAG	6 cut(s)	203, 1101, 1210, 1289, 1445, 1787
SphI	GCATGC	1 cut(s)	1931
Sse8387I	CCTGCAGG	1 cut(s)	2808
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	8 cut(s)	148, 155, 379, 412, 602, 605, 2174, 2993
SspDI	GGCGCC	1 cut(s)	353
SspI	AATATT	1 cut(s)	1891
SspMI	CTAG	2 cut(s)	1440, 1494
SstI	GAGCTC	3 cut(s)	33, 273, 2671
StuI	AGGCCT	1 cut(s)	1022
StyD4I	CCNGG	7 cut(s)	255, 318, 792, 1512, 1623, 1821, 1902
StyI	CCWWGG	3 cut(s)	237, 1080, 2690
TaiI	ACGT	3 cut(s)	216, 2167, 2933
TaqI	TCGA	8 cut(s)	27, 57, 66, 293, 491, 1290, 2293, 2631
TaqII	GACCGA	1 cut(s)	774
TatI	WGTACW	4 cut(s)	928, 1261, 2035, 2441
TauI	GCSGC	3 cut(s)	604, 607, 2995
TfiI	GAWTC	9 cut(s)	20, 68, 260, 387, 1202, 1268, 1436, 1718, 2303
TscAI	CASTG	9 cut(s)	16, 1381, 1566, 2283, 2557, 2563, 2755, 2778, 2863
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	8 cut(s)	96, 1010, 1283, 1470, 1505, 1643, 1924, 2507
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	9 cut(s)	16, 1381, 1566, 2283, 2557, 2563, 2755, 2778, 2863
Tth111I	GACNNNGTC	1 cut(s)	1904
Van91I	CCANNNNNTGG	1 cut(s)	2453
Vha464I	CTTAAG	1 cut(s)	1445
VneI	GTGCAC	1 cut(s)	2936
VpaK11BI	GGWCC	6 cut(s)	77, 253, 472, 670, 2626, 2729
VspI	ATTAAT	1 cut(s)	2661
XapI	RAATTY	4 cut(s)	464, 550, 2364, 2416
XceI	RCATGY	3 cut(s)	1931, 1942, 2869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1819
XhoI	CTCGAG	1 cut(s)	1289
XmiI	GTMKAC	2 cut(s)	363, 1107
XspI	CTAG	2 cut(s)	1440, 1494
ZrmI	AGTACT	1 cut(s)	2037
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.