pycom15g23550

Transmembrane family 220, helix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013562
Physical Location & Seq
Forward (+)
17684667 .. 17685588
922 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGAATTCCTCGAAGGCGTTGACTAATATAGTTAAATACAATTCTAGTTACACTTTGTGCTCTCTTCTAATGGCATCACTATTTGCTTATTCTGCATCTGTGCAGCTAAATGACCCTGATTGGTACTTTTGGTTTCCCCTCTACCTTGGTGCTTGTGTTGTTAATCTGGTGATTTGGGCTGTCTCATCCAAAGCAATCAAACAAGTTGCTGAGGCTGCACTATGGCTTGGAATATTTTTGTTCGTCAAAGTCACAGCTGAAAGTGCTTCTGGGTTCTTGTCTCTGGATTTAAGTGAGAGAGTTATTAGGGAAAAAGTAGGAAGTGGGTTGGTAATAATCTCCATGCTTTTGCAATTGGCAGCATCAAAATCTTCATCAGCAAAAGCTCTCCCACAACAAAGTTATTATCCAACATCTGTTAAATATGGAATGGCAGTTTTGGTGGGATTCAGTTTTGGACTTCCCTTTGTCTTCTTTGTGGTCCAAAAGGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM220

Protein Analysis

166

Amino Acids

18.06

Weight (kDa)

9.37

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM220 PF15071 27 - 119 5.2e-18 Transmembrane family 220, helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23755
fragaria_vesca FvH4_1g14340 FvH4_1g14340 FvH4_1g14340
malus_domestica MD15G1271500.v1.1
prunus_persica Prupe.7G146700_v2.0.a1 Prupe.7G146700_v2.0.a1
pyrus_communis pycom15g23550
rosa_chinensis RchiOBHm_Chr2g0103011
rosa_laevigata RLG00000017200
rosa_multiflora Rmu_sc0000388.1_g000018
rosa_roxburghii Rroxscaffold_2G00140000
rosa_rugosa Rorug02G0111400
rosa_samantha Rh2AG159600 Rh2BG166100 Rh2CG166300 Rh2DG165000
rosa_wichuraiana Rw2G012470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 1 cut(s) 125
AluBI AGCT 3 cut(s) 106, 257, 386
AluI AGCT 3 cut(s) 106, 257, 386
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 187, 285
ApeKI GCWGC 3 cut(s) 103, 215, 359
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 115, 202, 371
BcoDI GTCTC 2 cut(s) 187, 285
BfaI CTAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 104, 216, 360
BlsI GCNGC 3 cut(s) 105, 217, 361
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmsI GCATC 3 cut(s) 83, 104, 371
BpiI GAAGAC 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 115, 202, 371
BsgI GTGCAG 2 cut(s) 122, 201
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 187, 285
Bsp1286I GDGCHC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 185
BstMAI GTCTC 2 cut(s) 187, 285
BstMWI GCNNNNNNNGC 3 cut(s) 92, 215, 263
BstV1I GCAGC 3 cut(s) 115, 202, 371
BstV2I GAAGAC 1 cut(s) 463
BtsCI GGATG 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 343
CviJI RGCY 6 cut(s) 106, 179, 215, 226, 257, 386
CviKI_1 RGCY 6 cut(s) 106, 179, 215, 226, 257, 386
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 210
DraIII CACNNNGTG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 346
FaiI YATR 4 cut(s) 29, 223, 344, 426
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 104, 216, 360
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 104, 216, 360
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 104, 216, 360
Hin1II CATG 1 cut(s) 346
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 447
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 4 cut(s) 95, 103, 218, 352
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 215, 263
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 346
LpnPI CCDG 4 cut(s) 129, 152, 255, 269
Lsp1109I GCAGC 3 cut(s) 115, 202, 371
LweI GCATC 3 cut(s) 83, 104, 371
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 47, 250
MboII GAAGA 3 cut(s) 56, 363, 463
MfeI CAATTG 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 4, 40, 353
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 3 cut(s) 19, 149, 205
MseI TTAA 4 cut(s) 33, 162, 290, 420
MspA1I CMGCKG 1 cut(s) 257
MunI CAATTG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 92, 215, 263
NlaIII CATG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 447
PkrI GCNGC 3 cut(s) 105, 217, 361
PspPI GGNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 4 cut(s) 33, 162, 290, 420
SatI GCNGC 3 cut(s) 104, 216, 360
Sau96I GGNCC 1 cut(s) 481
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 108, 147, 259, 388, 492
SfaNI GCATC 3 cut(s) 83, 104, 371
SinI GGWCC 1 cut(s) 481
Sse9I AATT 3 cut(s) 4, 40, 353
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 145
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 4, 40, 353
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 4 cut(s) 33, 162, 290, 420
Tru9I TTAA 4 cut(s) 33, 162, 290, 420
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 103, 215, 359
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 17, 363
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.