pycom15g26010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013450
Physical Location & Seq
Reverse (-)
20654919 .. 20656464
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGGCCTAAAGCTTATAAGGTCGAGATTCGGCTGTACTCTAAAACCCGAAACTGGTTTCAACAGAGAAATGGGGGAGTGCAACAGCAGCAGCACTAGCGAGGAAGATGGAGACTTGGAGTGGAAAGCAGCCATCAGCTCAGCCGCTGCGGGGGCGTCCTCTTTTATGTCTTCCCTCGTCAACGGCGTTTCTGCTACCGAAAATAATGGCGGCGGCGGTGGAGATAACAAGCAGAGTAAAACCCAGCAGCAGCAGCTTCCCAAGCACTACCAAATCAAGGCACAAAAGATTTTGGATGAAATAATAGGAAAGAATTTGGAGATTGTTAGCGACCCCTTGATTCATTTACCAGATGATGAGCCTATGGGGGATACTGAAGAGGAAGGTTGTATTCGCTTGTTCAAAAATGCTCCCCCTGGGATTGTGTTCGATCATGTAGATCCACAGCCGCTGAGAAAGAGACCAAGAATTCTACCTGGAAAAGTAATTAATGAGAAATCGAAGAAGTTTAAACGACAACTCCAATCTGTTGCTGTTGATGGGAAAGATATATTGGCTGCCGCAAGAGATAAATGCCAGACATCATTGTCTAGGCGAGAAGCGAAAGATGCAGCAGCGAAAGCAGCAGCAAAGAGAGAAGAGGAAAGAGTTGCACAACTGAAGAAAATTAGGGGCGAGAAATGGCTACCTTGTATTGCCAAAGAAATGAAGTTGAAATCCAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.61

Weight (kDa)

9.21

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AasI GACNNNNNNGTC 1 cut(s) 586
AciI CCGC 7 cut(s) 144, 149, 210, 213, 216, 449, 561
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 2 cut(s) 313, 468
AcuI CTGAAG 2 cut(s) 396, 680
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 53, 150, 277
AgsI TTSAA 3 cut(s) 61, 403, 715
AjnI CCWGG 2 cut(s) 415, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 3 cut(s) 13, 138, 256
AluI AGCT 3 cut(s) 13, 138, 256
Alw26I GTCTC 2 cut(s) 105, 454
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 2 cut(s) 146, 451
AoxI GGCC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 313, 468
AseI ATTAAT 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 162
BccI CCATC 3 cut(s) 101, 140, 533
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 417, 477
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 105, 454
BfaI CTAG 2 cut(s) 96, 591
BfuI GTATCC 1 cut(s) 364
BlpI GCTNAGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 417, 477
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 417, 477
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 415, 416
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 150, 277
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 2 cut(s) 417, 477
BseDI CCNNGG 2 cut(s) 415, 416
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 3 cut(s) 53, 150, 277
BseMII CTCAG 2 cut(s) 153, 443
BseNI ACTGG 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 243
BshFI GGCC 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 53, 150, 277
BsmAI GTCTC 2 cut(s) 105, 454
BsnI GGCC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 430, 439
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 7 cut(s) 144, 149, 210, 213, 216, 449, 561
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 152, 444
BspPI GGATC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 454
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 415, 416
BssMI GATC 2 cut(s) 430, 439
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 417, 477
Bst6I CTCTTC 2 cut(s) 372, 633
BstACI GRCGYC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 139, 452
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 433, 442
BstMAI GTCTC 2 cut(s) 105, 454
BstMBI GATC 2 cut(s) 430, 439
BstMWI GCNNNNNNNGC 8 cut(s) 87, 96, 152, 253, 262, 608, 620, 623
BstNI CCWGG 2 cut(s) 417, 477
BstSCI CCNGG 2 cut(s) 415, 475
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 301
CaiI CAGNNNCTG 2 cut(s) 146, 451
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 434
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 2 cut(s) 139, 452
DpnI GATC 2 cut(s) 432, 441
DpnII GATC 2 cut(s) 430, 439
DraI TTTAAA 1 cut(s) 511
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 372, 633
EarI CTCTTC 2 cut(s) 372, 633
Eco31I GGTCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 396, 680
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 415, 475
FaeI CATG 1 cut(s) 437
FaiI YATR 5 cut(s) 17, 167, 365, 435, 551
FatI CATG 1 cut(s) 433
FauI CCCGC 1 cut(s) 142
FokI GGATG 1 cut(s) 308
FspBI CTAG 2 cut(s) 96, 591
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 6
HgaI GACGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 437
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 27, 340
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 81, 611, 653
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 96, 152, 253, 262, 608, 620, 623
HpyF3I CTNAG 2 cut(s) 139, 452
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 437
Kzo9I GATC 2 cut(s) 430, 439
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 8 cut(s) 39, 257, 363, 402, 429, 462, 489, 590
LweI GCATC 1 cut(s) 598
MaeI CTAG 2 cut(s) 96, 591
MalI GATC 2 cut(s) 432, 441
MboI GATC 2 cut(s) 430, 439
MboII GAAGA 6 cut(s) 116, 162, 389, 514, 650, 673
MflI RGATCY 1 cut(s) 439
MluCI AATT 4 cut(s) 313, 468, 486, 666
MnlI CCTC 5 cut(s) 94, 169, 185, 373, 634
MseI TTAA 2 cut(s) 489, 510
MspA1I CMGCKG 2 cut(s) 146, 451
MspR9I CCNGG 2 cut(s) 417, 477
MssI GTTTAAAC 1 cut(s) 511
MvaI CCWGG 2 cut(s) 417, 477
MwoI GCNNNNNNNGC 8 cut(s) 87, 96, 152, 253, 262, 608, 620, 623
NdeII GATC 2 cut(s) 430, 439
NlaIII CATG 1 cut(s) 437
PasI CCCWGGG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 27, 340
PmeI GTTTAAAC 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 415, 475
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 2 cut(s) 415, 475
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 2 cut(s) 146, 451
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 489, 510
Sau3AI GATC 2 cut(s) 430, 439
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 417, 477
SetI ASST 7 cut(s) 15, 23, 140, 258, 388, 478, 691
SfaNI GCATC 1 cut(s) 598
Sse9I AATT 4 cut(s) 313, 468, 486, 666
SsiI CCGC 7 cut(s) 144, 149, 210, 213, 216, 449, 561
SspMI CTAG 2 cut(s) 96, 591
StyD4I CCNGG 2 cut(s) 415, 475
TaqI TCGA 3 cut(s) 23, 429, 500
TasI AATT 4 cut(s) 313, 468, 486, 666
TatI WGTACW 1 cut(s) 35
TauI GCSGC 5 cut(s) 146, 213, 216, 451, 563
TfiI GAWTC 2 cut(s) 27, 340
Tru1I TTAA 2 cut(s) 489, 510
Tru9I TTAA 2 cut(s) 489, 510
TspDTI ATGAA 3 cut(s) 312, 332, 722
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 2 cut(s) 313, 468
XspI CTAG 2 cut(s) 96, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.