pycom15g26160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012157
Physical Location & Seq
Reverse (-)
20874778 .. 20875480
703 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGCTCAGGGAGGAGAAACGACGCAAGCTGCATGAGGCCGTCCTCAACATGCTCCATCCTCCTCCATCACCTCCACCAAAAGATGAGCCTGGAAACGTGCCGTTGAGCATTTTAGGCGAGGACTTTGAAGCAGACGGCTTAGGGAAAAGTGGGTCTTCAGCAACGAGCAGCGAAGACGACGGCAATGACGAAAGTGAGGCTCAGAGACTTACAAGGGCTCAGCGGAAGAGACTCCGCAAAAAGAAGCTCAAGGAAGATGCTTCTCGCCGTAGGGAAATTATTGGGCCTCTATTACCTTCAGCAACCGATCAATGTGACAATGAAGCACAAGGTGTTCGACGTAATGCCTCTGAGAAACCTGGCGCTGCTGTCACCGAGGAACCGGGAGATGAGCCACCTGCTTGCAGTAATCAGAACAAAGTAAAGCAAAGGAGGAAGGCAAAGAAGCAGGCTAGAGAAAGAGAGCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

9.14

Isoelectric Point (pI)

75.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AciI CCGC 2 cut(s) 223, 235
AcuI CTGAAG 2 cut(s) 141, 282
AdeI CACNNNGTG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 2 cut(s) 88, 358
AluBI AGCT 2 cut(s) 28, 247
AluI AGCT 2 cut(s) 28, 247
Alw26I GTCTC 2 cut(s) 199, 223
AoxI GGCC 2 cut(s) 36, 284
ApeKI GCWGC 3 cut(s) 28, 168, 365
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 60, 364
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 147, 180
BbvI GCAGC 3 cut(s) 15, 180, 352
BccI CCATC 2 cut(s) 63, 73
BceAI ACGGC 5 cut(s) 23, 85, 151, 196, 252
BciT130I CCWGG 2 cut(s) 90, 360
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 199, 223
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 406
BisI GCNGC 3 cut(s) 29, 169, 366
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 3 cut(s) 30, 170, 367
Bme1390I CCNGG 3 cut(s) 90, 360, 384
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 3 cut(s) 90, 360, 384
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 147, 180
Bpu10I CCTNAGC 2 cut(s) 5, 139
Bpu1102I GCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 90, 360
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 4 cut(s) 19, 215, 233, 342
BseRI GAGGAG 2 cut(s) 26, 51
BseXI GCAGC 3 cut(s) 15, 180, 352
BshFI GGCC 2 cut(s) 38, 286
BsiSI CCGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 199, 223
BsnI GGCC 2 cut(s) 38, 286
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 2 cut(s) 223, 235
BspANI GGCC 2 cut(s) 38, 286
BspCNI CTCAG 4 cut(s) 18, 214, 232, 343
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 90, 360
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 26, 403, 450
BstDEI CTNAG 5 cut(s) 5, 139, 201, 219, 351
BstF5I GGATG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 199, 223
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 2 cut(s) 90, 360
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 88, 358, 382
BstV1I GCAGC 3 cut(s) 15, 180, 352
BstV2I GAAGAC 2 cut(s) 147, 180
BsuRI GGCC 2 cut(s) 38, 286
BtsCI GGATG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 3 cut(s) 26, 403, 450
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 30
CviAII CATG 2 cut(s) 32, 49
DdeI CTNAG 5 cut(s) 5, 139, 201, 219, 351
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraIII CACNNNGTG 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 141, 282
EcoRII CCWGG 2 cut(s) 88, 358
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 35, 52
FaiI YATR 2 cut(s) 33, 50
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 2 cut(s) 31, 48
Fnu4HI GCNGC 3 cut(s) 29, 169, 366
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 29, 169, 366
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 364
GluI GCNGC 3 cut(s) 29, 169, 366
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 2 cut(s) 38, 286
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 35, 52
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 60, 364
Hpy188I TCNGA 3 cut(s) 204, 352, 414
Hpy99I CGWCG 3 cut(s) 24, 182, 342
HpyAV CCTTC 2 cut(s) 306, 430
HpyCH4IV ACGT 2 cut(s) 96, 340
HpyCH4V TGCA 2 cut(s) 31, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 5 cut(s) 5, 139, 201, 219, 351
HpySE526I ACGT 2 cut(s) 96, 340
Hsp92II CATG 2 cut(s) 35, 52
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 75, 102, 345, 372, 396, 411, 434
Lsp1109I GCAGC 3 cut(s) 15, 180, 352
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 96, 340
MaeIII GTNAC 2 cut(s) 314, 370
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 4 cut(s) 147, 185, 238, 266
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 276
MlyI GAGTC 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 3 cut(s) 90, 360, 384
MvaI CCWGG 2 cut(s) 90, 360
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 384
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 35, 52
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 314, 370
NspI RCATGY 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 3 cut(s) 30, 170, 367
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 88, 358
PspGI CCWGG 2 cut(s) 88, 358
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 284
SatI GCNGC 3 cut(s) 29, 169, 366
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 3 cut(s) 90, 360, 384
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 30, 73, 99, 249, 298, 334, 343, 361, 400
SfaNI GCATC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 276
SsiI CCGC 2 cut(s) 223, 235
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 88, 358, 382
TaiI ACGT 2 cut(s) 99, 343
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 276
TseFI GTSAC 2 cut(s) 314, 370
TseI GCWGC 3 cut(s) 28, 168, 365
Tsp45I GTSAC 2 cut(s) 314, 370
TspDTI ATGAA 1 cut(s) 336
XceI RCATGY 1 cut(s) 52
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.