pycom15g26260

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011726
Physical Location & Seq
Reverse (-)
21034290 .. 21035885
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGGTAGTTCATCCAATCCCTTGCTCGCTTTTCTATGTGTATATCAAGCTCTATATATACCCCGACCCTTTGCATATAGTTTCTAGTACAAAAACACAGAGAGAAATGGCCGGATCATATAAAGCCCTCTTCTTCTTAGCTCTTGTCCTGTGCTCTACTTTAGTAGTTTATGCAGCAAGACCAGAACCAGCTTTTTCAGCAGCGAAGTCTGCGAAAACCGAACTCAAGGGTGTTGAAACAGAACAGGTTGATGAAGTTGAGAGCTGTGAAGGAGTTGGAGAGGAGGAGTGCTTGATGAGAAGAACTCTGGCTGCTCATGTCGATTACATCTATACACAGAAGCATAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

5.76

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 56 - 117 4e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 4 cut(s) 49, 140, 191, 264
AluI AGCT 4 cut(s) 49, 140, 191, 264
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 173, 200, 311
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 185, 212, 298
BfaI CTAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 174, 201, 312
BlsI GCNGC 3 cut(s) 175, 202, 313
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpuEI CTTGAG 1 cut(s) 209
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 296, 299
BseXI GCAGC 3 cut(s) 185, 212, 298
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 111
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 113
BspANI GGCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 121
BssMI GATC 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 197, 209
BstV1I GCAGC 3 cut(s) 185, 212, 298
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 317
CviJI RGCY 7 cut(s) 49, 110, 125, 140, 191, 264, 311
CviKI_1 RGCY 7 cut(s) 49, 110, 125, 140, 191, 264, 311
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
FaeI CATG 1 cut(s) 320
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 174, 201, 312
Fsp4HI GCNGC 3 cut(s) 174, 201, 312
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 174, 201, 312
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 111
Hin1II CATG 1 cut(s) 320
HpaII CCGG 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 73, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 209
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 1 cut(s) 320
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 124, 161, 195, 201, 230, 293
Lsp1109I GCAGC 3 cut(s) 185, 212, 298
MaeI CTAG 1 cut(s) 84
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 3 cut(s) 121, 124, 312
MhlI GDGCHC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 3 cut(s) 137, 274, 277
MspI CCGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 197, 209
NdeII GATC 1 cut(s) 113
NlaIII CATG 1 cut(s) 320
PkrI GCNGC 3 cut(s) 175, 202, 313
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 3 cut(s) 174, 201, 312
Sau3AI GATC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 155
SetI ASST 5 cut(s) 51, 142, 193, 249, 266
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SspMI CTAG 1 cut(s) 84
TaqI TCGA 1 cut(s) 321
TatI WGTACW 1 cut(s) 86
TseI GCWGC 3 cut(s) 173, 200, 311
TspDTI ATGAA 1 cut(s) 267
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.