Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

21703826 .. 21705896

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGATGGCGATGGTCCGAGCTGCTGGGCTTCGGACCGCCCTGCGCGGCGGCTCTCGATCAGTTGCTCCTCCAAAGCGCTCCTTCTCCTCCTCTGCTGGACACAACGATGCTCGTGAGGCGGACAAGTGGGAGAAGATAACTTACTTAGGCATTGCTGCCTGCACTATTTTAACTTTTGTTAACCTGTCAAAGCCGCATCCTCACCATGAACCGCCTCCTCCATACCCATACTTGCATATCCGCAATAAGGAATTCCCATGGGGTCCGGACGGCCTTTTCGAAAGAAAGCACGACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

101

Amino Acids

11.2

Weight (kDa)

9.72

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	7 cut(s)	39, 48, 51, 122, 197, 215, 244
AcsI	RAATTY	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	250
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	23, 158
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspLEI	GCGC	2 cut(s)	48, 81
AspS9I	GGNCC	3 cut(s)	16, 36, 266
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	16, 36, 266
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	10, 145
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	5 cut(s)	24, 49, 52, 159, 197
BlsI	GCNGC	5 cut(s)	25, 50, 53, 160, 198
Bme18I	GGWCC	3 cut(s)	16, 36, 266
BmgT120I	GGNCC	3 cut(s)	16, 36, 266
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	100, 208
Bpu14I	TTCGAA	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	4 cut(s)	60, 79, 82, 210
BseXI	GCAGC	2 cut(s)	10, 145
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	250
BsnI	GGCC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	59
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	7 cut(s)	39, 48, 51, 122, 197, 215, 244
BspANI	GGCC	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	48, 81
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	10, 145
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	2 cut(s)	20, 26
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	2 cut(s)	48, 81
Cfr13I	GGNCC	3 cut(s)	16, 36, 266
CpoI	CGGWCCG	1 cut(s)	36
CspI	CGGWCCG	1 cut(s)	36
CviAII	CATG	2 cut(s)	209, 261
CviJI	RGCY	5 cut(s)	23, 31, 54, 196, 276
CviKI_1	RGCY	5 cut(s)	23, 31, 54, 196, 276
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	3 cut(s)	16, 36, 266
Eco47III	AGCGCT	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	212, 264
FaiI	YATR	5 cut(s)	210, 226, 232, 240, 262
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	208, 260
Fnu4HI	GCNGC	5 cut(s)	24, 49, 52, 159, 197
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	24, 49, 52, 159, 197
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	2 cut(s)	47, 80
GluI	GCNGC	5 cut(s)	24, 49, 52, 159, 197
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	2 cut(s)	48, 81
Hin1II	CATG	2 cut(s)	212, 264
Hin6I	GCGC	2 cut(s)	46, 79
HinP1I	GCGC	2 cut(s)	46, 79
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	20, 36
Hpy188III	TCNNGA	3 cut(s)	57, 116, 269
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	165, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	212, 264
HspAI	GCGC	2 cut(s)	46, 79
Kpn2I	TCCGGA	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	73, 86
LpnPI	CCDG	6 cut(s)	12, 56, 84, 175, 200, 282
Lsp1109I	GCAGC	2 cut(s)	10, 145
LweI	GCATC	2 cut(s)	100, 208
MaeI	CTAG	1 cut(s)	301
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	7 cut(s)	81, 100, 103, 112, 213, 228, 231
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	2 cut(s)	173, 183
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	212, 264
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	25, 50, 53, 160, 198
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	16, 36, 266
RseI	CAYNNNNRTG	1 cut(s)	108
Rsr2I	CGGWCCG	1 cut(s)	36
RsrII	CGGWCCG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	173, 183
SatI	GCNGC	5 cut(s)	24, 49, 52, 159, 197
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	3 cut(s)	16, 36, 266
SetI	ASST	2 cut(s)	25, 189
SfaNI	GCATC	2 cut(s)	100, 208
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	3 cut(s)	16, 36, 266
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	7 cut(s)	39, 48, 51, 122, 197, 215, 244
SspMI	CTAG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	2 cut(s)	58, 282
TasI	AATT	1 cut(s)	254
TauI	GCSGC	3 cut(s)	51, 54, 199
Tru1I	TTAA	2 cut(s)	173, 183
Tru9I	TTAA	2 cut(s)	173, 183
TseI	GCWGC	2 cut(s)	23, 158
TspDTI	ATGAA	1 cut(s)	225
VpaK11BI	GGWCC	3 cut(s)	16, 36, 266
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.