Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012855

Physical Location & Seq

Genomic Coordinates Reverse (-)

21839989 .. 21843697

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

ATGAAAAGGGAAGATTGTGAACAAAGTCACTCACTCCAGCTACTCTCTCGTCTACTCCCGCACCCGCACCCGCACCCGCCCCCGACCACCCCCCCACCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTCCTCCGCACACCGCCCGCCCAAACACCACCAAAAATGCGGCTCCTTTTCCTCCTCTTCCTCCTCCACCTCCACCGTTCTCTCTCCGCGGGCGCAATGTCCGACTACCGCGCCCTCCTCTCCCTCAAATCCTCCATAACCTCCGACCCCAACTCAGCCCTTTCCACCTGGACCCCCACCACCAGCCACTGCACTTGGTCCGGCGTTACCTGCGACTCCTCCCGCCGCTACGTGACCTCCCTTGACCTCTCCGGGCTCGACCTCACCGGCACTCTTTCTCCTGACCTCGCCCACCTCCGCTTCCTCTCCAACCTCACCCTCGCCGAGAACCAGTTCTCGGGTCCCATCCCGCCCGATATCTCCGCCCTCTCGGGCCTCCGCCTCCTCAACCTCTCCAACAACGTCTTCAACACCACCTTCCCCCCTCAGCTCTCCAACCTCACTCGCCTCACCGTCCTCGACCTCTATAACAACAACCTAACCGGCGACCTCCCCGTCTCCGTCACCCACATGACCTCCCTCCGCCATTTGCATTTGGGCGGAAACTTCTTCTCCGGCCAGATCCCTCCCGAGTTCGGCCGCTTCCCATTCCTCGAGTACCTAGCAGTCTCCGGCAACGAATTGGGCGGTTCAATCCCTCCCGAAATCGGAAACTTAACCACCTTGAAAGAGCTCTACATCGGCTATTTCAACAGCTACGAAGGCGGGATGCCGCCGGAAATTGGAAACTTATCCAACCTCGTCCGGTTCGACGCCGCCAACTGTAACTTAACCGGAGAGGTCCCGCCGGAACTGGGTCGGCTGCAAAATGTCGACACCCTGTTTCTCCAGGTGAATGCCCTTTCGGGGTCGTTGACTCCCGAGCTGGGTTACCTCAAGAGCCTGAAATCCATGGACTTATCCAACAATATGTTTACCGGCGAGATTCCGGGTTCCTTTTCGGAGCTCAAGAACTTGACCCTTTTGAATCTCTTCCGAAACAGGCTCCACGGCGCCATTCCCGAGTTTATCGGCGAGTTGCCGGAGCTCCAGGTTCTGCAGCTCTGGGAGAACAACTTCACTGGCAGCATCCCTCAGGATTTGGGCAAAAACGGGAAGCTTCAAATCCTCGACCTTTCGTCAAACAAGTTGACCGGAACTCTTCCTCCCGATATGTGTTTCGGGAACAGTCTCCAGACCCTCATCACTCTCTCAAACTTCCTTTTCGGGCCGATTCCCGAGTCGCTCGGCCGGTGCGACTCGCTGAGTCGGATCCGAATGGGCGACAACTTCCTCAACGGGTCGATTCCGAAAGGTCTGTTTAGTTTGCCCAAGCTTACCCAAGTCGAGTTGCAGGATAATCTCTTGGATGGTTCGTTTCCCGAGACCGATACAATCTCGGGGAATCTCGGCCAGATTAGTCTTTCCAATAACCGGCTTTTCGGGTCCCTGCCACCCACCATCGGCAACTTCTCCGGCGTCCAGAAACTTCTTCTCGACGGGAACAAGTTCTCTGGTCGAATCCCACCCGAGATTGGGCGATTACAGCAGCTATCCAAGATGGATTTCAAGCACAACAAGTTAATGGGTTCGATAACCCCCGAAATCAGCCAATGCAAGCTCTTGACATTCGTCGATCTCAGCCGAAACGAGCTCTCCGGCGAGATTCCGAAGGAGATTACCGGCATGAGGATACTGAACTACCTCAACCTTTCGAGAAACCATCTTTTTGGCAGCATTCCGTCGTCTATATCCACAATGCAGAGCTTGACATCCGTGGACTTTTCATATAACAATCTTTCGGGTTTGGTTCCGGGCACTGGTCAGTTCAGTTACTTCAATTACACTTCGTTTTTGGGCAACCCCGACCTCTGCGGTCCCTATTTGGTTCCCTGCAAAGACGGGGTCGCCAATGGCACTCACCAACCACATGTAAAAGGTGCGCTCACTGCTTCTCTGAAGTTATTGCTTGTTATTGGGTTGCTTCTGTGCTCGATCATATTCGCAGTTGCAGCGATAATCAAGGCCCGGTCATTGAAGAGAGCAAGCGATTCCCGAGCTTGGAAACTTACTGCATTCCAACGCTTGGACTTCACGGTTGATGATGTGTTGGATTCGTTGAAGGAGGACAACATTATTGGGAAAGGAGGGGCTGGGATTGTGTACAAAGGAGCTATGCCTACTGGTGACAATGTGGCAGTCAAAAGACTCCCTGCAATGAGCAGAGGGTCCTCCCACGACCACGGATTCAACGCGGAAATCCAAACTCTTGGTCGAATTCGACACAGACACATTGTTCGATTATTGGGTTTCTGTTCAAACCACGAAACAAATCTTTTGGTCTATGAGTACATGCCCAATGGGAGCTTGGGTGAAGTTCTTCATGGCAAAAAAGGGGGTCACTTGCATTGGGACACAAGGTACAAAATTGCCATTGAGGCCGCAAAGGGGCTTTGCTATCTTCACCACGACTGCTCACCGTTGATCGTCCACAGAGACGTGAAGTCAAATAACATCCTCCTCGACTCTAATTTCGAAGCTCATGTTGCTGATTTCGGGCTTGCCAAGTTCCTGCAGGATTCTGGCACGTCCGAGTGCATGTCTGCGATTGCTGGTTCTTATGGATATATTGCTCCAGAGTATGCATACACATTGAAGGTTGATGAGAAGAGCGACGTTTATAGCTTCGGTGTGGTTCTCTTGGAACTTGTTAGCGGCAGGAAACCGGTTGGTGAATTTGGGGACGGAGTGGACATAGTCCAATGGGTGCGAAAAATGACTGATTCAAACAAGGAAGGAGTCCTCAAAATCCTTGACCCTAGACTCCCTTCAGTTCCTCTCCAGGAGGTTATGCACGTATTTTACGTGGCAATGCTGTGTGTGGAAGAACAAGCAGTGGAACGTCCAACAATGCGAGAAGTGGTTCAAATTCTGACCGAGCTTCCAAAGGGGCCCGGCTCAAAACTGGTAGAGGAATCAGCCATCACAGAGTCCTCGCCGCCACCTGCCACTACTGCATCGGAGTCTCCAGGTACAACGTCAAAAGACATGAAAGACCAGCCACCACCGCAGTCACCGCCGCCCGATCTTCTTAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1074

Amino Acids

117.01

Weight (kDa)

6.2

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	81 - 119	6.8e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	141 - 226	5.1e-06	Leucine-rich repeat region
LRR_8	PF13855	172 - 229	1.2e-06	Leucine rich repeat
LRR_4	PF12799	195 - 235	5.7e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	216 - 327	4.4e-08	Leucine-rich repeat region
LRR_8	PF13855	318 - 376	9.3e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	749 - 1018	5.1e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	749 - 1016	1.3e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49670 AT5G65700 AT5G65700
fragaria_vesca	FvH4_1g18710
malus_domestica	MD02G1194600.v1.1 MD15G1304900.v1.1
prunus_persica	Prupe.6G212200_v2.0.a1
pyrus_communis	pycom02g15850 pycom15g26730
rosa_chinensis	RchiOBHm_Chr2g0109581
rosa_laevigata	RLG00000017747
rosa_multiflora	Rmu_sc0000332.1_g000045
rosa_roxburghii	Rroxscaffold_2G00134130
rosa_rugosa	Rorug02G0160800
rosa_samantha	Rh2AG213200 Rh2BG223400 Rh2CG215200 Rh2DG218700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3133
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	2 cut(s)	359, 3133
AccB1I	GGYRCC	1 cut(s)	1133
AccB7I	CCANNNNNTGG	1 cut(s)	2206
AccI	GTMKAC	2 cut(s)	52, 954
AccII	CGCG	3 cut(s)	230, 252, 2375
AclWI	GGATC	3 cut(s)	697, 1387, 1400
AcoI	YGGCCR	4 cut(s)	697, 718, 1369, 1531
AcsI	RAATTY	3 cut(s)	2397, 2855, 3048
AcuI	CTGAAG	2 cut(s)	2099, 2934
AcyI	GRCGYC	3 cut(s)	894, 1134, 1599
AfaI	GTAC	5 cut(s)	740, 2285, 2471, 2543, 3154
AflIII	ACRYGT	1 cut(s)	2050
AgeI	ACCGGT	1 cut(s)	2845
AhdI	GACNNNNNGTC	2 cut(s)	1258, 2623
AjiI	CACGTC	2 cut(s)	2620, 2709
AjnI	CCWGG	5 cut(s)	308, 969, 1170, 2961, 3148
AjuI	GAANNNNNNNTTGG	4 cut(s)	530, 562, 1670, 1702
AloI	GAACNNNNNNTCC	2 cut(s)	1270, 1302
Alw21I	GWGCWC	5 cut(s)	816, 1089, 1170, 1776, 2114
Alw26I	GTCTC	6 cut(s)	643, 754, 1316, 1499, 2610, 3150
AlwI	GGATC	3 cut(s)	697, 1387, 1400
AlwNI	CAGNNNCTG	2 cut(s)	330, 1177
AoxI	GGCC	9 cut(s)	514, 697, 718, 1349, 1369, 1531, 2145, 2559, 3071
ApaI	GGGCCC	1 cut(s)	3075
ApeKI	GCWGC	6 cut(s)	943, 1180, 1206, 1669, 1854, 2132
ApoI	RAATTY	3 cut(s)	2397, 2855, 3048
ArsI	GACNNNNNNTTYG	8 cut(s)	2010, 2042, 2377, 2400, 2409, 2432, 2636, 2668
AsiGI	ACCGGT	1 cut(s)	2845
Asp700I	GAANNNNTTC	6 cut(s)	473, 1112, 1196, 1628, 2499, 3042
AspLEI	GCGC	4 cut(s)	236, 254, 1136, 2065
AsuC2I	CCSGG	5 cut(s)	394, 1071, 1935, 2149, 3075
AsuII	TTCGAA	1 cut(s)	2655
AvaII	GGWCC	7 cut(s)	312, 339, 482, 922, 1566, 1997, 2349
AxyI	CCTNAGG	1 cut(s)	1215
BaeGI	GKGCMC	2 cut(s)	1940, 3075
BamHI	GGATCC	1 cut(s)	1392
BanI	GGYRCC	1 cut(s)	1133
BanII	GRGCYC	6 cut(s)	399, 816, 1089, 1170, 1776, 3075
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	5 cut(s)	816, 1089, 1170, 1776, 2114
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	6 cut(s)	930, 1192, 1218, 1681, 1866, 2144
BccI	CCATC	6 cut(s)	494, 1484, 1589, 1675, 1851, 3110
BceAI	ACGGC	1 cut(s)	1147
BciT130I	CCWGG	5 cut(s)	310, 971, 1172, 2963, 3150
BciVI	GTATCC	1 cut(s)	1806
BcnI	CCSGG	5 cut(s)	394, 1071, 1935, 2149, 3075
BcoDI	GTCTC	6 cut(s)	643, 754, 1316, 1499, 2610, 3150
BfaI	CTAG	2 cut(s)	743, 2940
BfmI	CTRYAG	2 cut(s)	1178, 2693
BfoI	RGCGCY	1 cut(s)	1137
BfuAI	ACCTGC	2 cut(s)	359, 3133
BfuI	GTATCC	1 cut(s)	1806
BglI	GCCNNNNNGGC	1 cut(s)	2558
Bme18I	GGWCC	7 cut(s)	312, 339, 482, 922, 1566, 1997, 2349
BmeRI	GACNNNNNGTC	2 cut(s)	1258, 2623
BmgBI	CACGTC	2 cut(s)	2620, 2709
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	3 cut(s)	840, 1218, 3146
BmuI	ACTGGG	1 cut(s)	944
BoxI	GACNNNNGTC	1 cut(s)	1751
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	7 cut(s)	20, 953, 1154, 1298, 2739, 2945, 3132
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	2655
BpuEI	CTTGAG	2 cut(s)	1001, 1073
BpuMI	CCSGG	5 cut(s)	394, 1071, 1935, 2149, 3075
BsaAI	YACGTR	3 cut(s)	373, 2977, 2986
BsaHI	GRCGYC	3 cut(s)	894, 1134, 1599
BsaI	GGTCTC	1 cut(s)	1499
BsaJI	CCNNGG	5 cut(s)	228, 1032, 1129, 1896, 2362
BsaWI	WCCGGW	4 cut(s)	885, 914, 1274, 2845
Bse118I	RCCGGY	7 cut(s)	407, 623, 1058, 1371, 1554, 1802, 2845
Bse1I	ACTGG	6 cut(s)	472, 939, 1207, 1945, 2308, 3090
Bse21I	CCTNAGG	1 cut(s)	1215
Bse3DI	GCAATG	3 cut(s)	243, 2343, 2997
BseBI	CCWGG	5 cut(s)	310, 971, 1172, 2963, 3150
BseDI	CCNNGG	5 cut(s)	228, 1032, 1129, 1896, 2362
BseGI	GGATG	6 cut(s)	486, 855, 1209, 1495, 1892, 2634
BseMI	GCAATG	3 cut(s)	243, 2343, 2997
BseMII	CTCAG	5 cut(s)	309, 581, 1229, 1376, 1774
BseNI	ACTGG	6 cut(s)	472, 939, 1207, 1945, 2308, 3090
BseSI	GKGCMC	2 cut(s)	1940, 3075
BseX3I	CGGCCG	2 cut(s)	718, 1369
BseXI	GCAGC	6 cut(s)	930, 1192, 1218, 1681, 1866, 2144
BseYI	CCCAGC	2 cut(s)	1006, 2273
BsgI	GTGCAG	1 cut(s)	316
Bsh1236I	CGCG	3 cut(s)	230, 252, 2375
Bsh1285I	CGRYCG	2 cut(s)	721, 1372
BshFI	GGCC	9 cut(s)	516, 699, 720, 1351, 1371, 1533, 2147, 2561, 3073
BshNI	GGYRCC	1 cut(s)	1133
BshTI	ACCGGT	1 cut(s)	2845
BsiEI	CGRYCG	2 cut(s)	721, 1372
BsiHKAI	GWGCWC	5 cut(s)	816, 1089, 1170, 1776, 2114
BslFI	GGGAC	6 cut(s)	468, 908, 1552, 1983, 2546, 2876
BsmAI	GTCTC	6 cut(s)	643, 754, 1316, 1499, 2610, 3150
BsmBI	CGTCTC	2 cut(s)	643, 2610
BsmFI	GGGAC	6 cut(s)	468, 908, 1552, 1983, 2546, 2876
BsmI	GAATGC	3 cut(s)	982, 1857, 2195
BsnI	GGCC	9 cut(s)	516, 699, 720, 1351, 1371, 1533, 2147, 2561, 3073
Bso31I	GGTCTC	1 cut(s)	1499
Bsp119I	TTCGAA	1 cut(s)	2655
Bsp120I	GGGCCC	1 cut(s)	3071
Bsp1286I	GDGCHC	8 cut(s)	399, 816, 1089, 1170, 1776, 1940, 2114, 3075
Bsp1407I	TGTACA	1 cut(s)	2283
Bsp143I	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
Bsp19I	CCATGG	1 cut(s)	1032
BspANI	GGCC	9 cut(s)	516, 699, 720, 1351, 1371, 1533, 2147, 2561, 3073
BspCNI	CTCAG	5 cut(s)	308, 580, 1228, 1377, 1773
BspFNI	CGCG	3 cut(s)	230, 252, 2375
BspMAI	CTGCAG	2 cut(s)	1182, 2697
BspMI	ACCTGC	2 cut(s)	359, 3133
BspPI	GGATC	3 cut(s)	697, 1387, 1400
BspQI	GCTCTTC	1 cut(s)	2783
BspT104I	TTCGAA	1 cut(s)	2655
BspT107I	GGYRCC	1 cut(s)	1133
BspTNI	GGTCTC	1 cut(s)	1499
BsrDI	GCAATG	3 cut(s)	243, 2343, 2997
BsrFI	RCCGGY	7 cut(s)	407, 623, 1058, 1371, 1554, 1802, 2845
BsrGI	TGTACA	1 cut(s)	2283
BsrI	ACTGG	6 cut(s)	472, 939, 1207, 1945, 2308, 3090
BssAI	RCCGGY	7 cut(s)	407, 623, 1058, 1371, 1554, 1802, 2845
BssECI	CCNNGG	5 cut(s)	228, 1032, 1129, 1896, 2362
BssMI	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
BssNI	GRCGYC	3 cut(s)	894, 1134, 1599
BssT1I	CCWWGG	1 cut(s)	1032
Bst2UI	CCWGG	5 cut(s)	310, 971, 1172, 2963, 3150
Bst4CI	ACNGT	6 cut(s)	218, 595, 905, 1310, 2218, 2601
Bst6I	CTCTTC	6 cut(s)	142, 203, 1118, 1287, 2153, 2783
BstACI	GRCGYC	3 cut(s)	894, 1134, 1599
BstAUI	TGTACA	1 cut(s)	2283
BstBAI	YACGTR	3 cut(s)	373, 2977, 2986
BstBI	TTCGAA	1 cut(s)	2655
BstC8I	GCNNGC	5 cut(s)	159, 232, 1739, 2167, 2682
BstDEI	CTNAG	6 cut(s)	295, 567, 1215, 1385, 1760, 3212
BstDSI	CCRYGG	5 cut(s)	228, 1032, 1129, 1896, 2362
BstEII	GGTNACC	1 cut(s)	1010
BstF5I	GGATG	6 cut(s)	486, 855, 1209, 1495, 1892, 2634
BstFNI	CGCG	3 cut(s)	230, 252, 2375
BstH2I	RGCGCY	1 cut(s)	1137
BstHHI	GCGC	4 cut(s)	236, 254, 1136, 2065
BstKTI	GATC	6 cut(s)	705, 1395, 1759, 2118, 2607, 3208
BstMAI	GTCTC	6 cut(s)	643, 754, 1316, 1499, 2610, 3150
BstMBI	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
BstMCI	CGRYCG	2 cut(s)	721, 1372
BstNI	CCWGG	5 cut(s)	310, 971, 1172, 2963, 3150
BstNSI	RCATGY	3 cut(s)	2054, 2476, 2722
BstPAI	GACNNNNGTC	1 cut(s)	1751
BstPI	GGTNACC	1 cut(s)	1010
BstSFI	CTRYAG	2 cut(s)	1178, 2693
BstSLI	GKGCMC	2 cut(s)	1940, 3075
BstUI	CGCG	3 cut(s)	230, 252, 2375
BstV1I	GCAGC	6 cut(s)	930, 1192, 1218, 1681, 1866, 2144
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	702, 1392
BstXI	CCANNNNNNTGG	2 cut(s)	1850, 2390
BstYI	RGATCY	2 cut(s)	702, 1392
BstZI	CGGCCG	2 cut(s)	718, 1369
Bsu36I	CCTNAGG	1 cut(s)	1215
BsuI	GTATCC	1 cut(s)	1806
BsuRI	GGCC	9 cut(s)	516, 699, 720, 1351, 1371, 1533, 2147, 2561, 3073
BtgI	CCRYGG	5 cut(s)	228, 1032, 1129, 1896, 2362
BtrI	CACGTC	2 cut(s)	2620, 2709
BtsCI	GGATG	6 cut(s)	486, 855, 1209, 1495, 1892, 2634
BtsI	GCAGTG	3 cut(s)	328, 2067, 3021
BtsIMutI	CAGTG	5 cut(s)	328, 1200, 1938, 2067, 3021
BveI	ACCTGC	2 cut(s)	359, 3133
Cac8I	GCNNGC	5 cut(s)	159, 232, 1739, 2167, 2682
CaiI	CAGNNNCTG	2 cut(s)	330, 1177
CfoI	GCGC	4 cut(s)	236, 254, 1136, 2065
Cfr10I	RCCGGY	7 cut(s)	407, 623, 1058, 1371, 1554, 1802, 2845
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	2 cut(s)	902, 1588
Csp6I	GTAC	5 cut(s)	739, 2284, 2470, 2542, 3153
CspAI	ACCGGT	1 cut(s)	2845
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviAII	CATG	9 cut(s)	652, 1033, 1807, 2051, 2473, 2504, 2663, 2719, 3169
CviQI	GTAC	5 cut(s)	739, 2284, 2470, 2542, 3153
DdeI	CTNAG	6 cut(s)	295, 567, 1215, 1385, 1760, 3212
DinI	GGCGCC	1 cut(s)	1135
DpnI	GATC	6 cut(s)	704, 1394, 1758, 2117, 2606, 3207
DpnII	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
DrdI	GACNNNNNNGTC	1 cut(s)	635
DriI	GACNNNNNGTC	2 cut(s)	1258, 2623
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	4 cut(s)	697, 718, 1369, 1531
EagI	CGGCCG	2 cut(s)	718, 1369
Eam1104I	CTCTTC	6 cut(s)	142, 203, 1118, 1287, 2153, 2783
Eam1105I	GACNNNNNGTC	2 cut(s)	1258, 2623
EarI	CTCTTC	6 cut(s)	142, 203, 1118, 1287, 2153, 2783
EciI	GGCGGA	4 cut(s)	493, 509, 653, 696
Ecl136II	GAGCTC	4 cut(s)	814, 1087, 1168, 1774
EclXI	CGGCCG	2 cut(s)	718, 1369
Eco130I	CCWWGG	1 cut(s)	1032
Eco24I	GRGCYC	6 cut(s)	399, 816, 1089, 1170, 1776, 3075
Eco31I	GGTCTC	1 cut(s)	1499
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	7 cut(s)	312, 339, 482, 922, 1566, 1997, 2349
Eco52I	CGGCCG	2 cut(s)	718, 1369
Eco53kI	GAGCTC	4 cut(s)	814, 1087, 1168, 1774
Eco57I	CTGAAG	2 cut(s)	2099, 2934
Eco81I	CCTNAGG	1 cut(s)	1215
Eco91I	GGTNACC	1 cut(s)	1010
EcoICRI	GAGCTC	4 cut(s)	814, 1087, 1168, 1774
EcoO109I	RGGNCCY	5 cut(s)	482, 922, 1566, 2349, 3071
EcoO65I	GGTNACC	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	2397
EcoRII	CCWGG	5 cut(s)	308, 969, 1170, 2961, 3148
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	1032
EcoT22I	ATGCAT	1 cut(s)	2767
EcoT38I	GRGCYC	6 cut(s)	399, 816, 1089, 1170, 1776, 3075
EgeI	GGCGCC	1 cut(s)	1135
EheI	GGCGCC	1 cut(s)	1135
ErhI	CCWWGG	1 cut(s)	1032
Esp3I	CGTCTC	2 cut(s)	643, 2610
FaeI	CATG	9 cut(s)	655, 1036, 1810, 2054, 2476, 2507, 2666, 2722, 3172
FaqI	GGGAC	6 cut(s)	468, 908, 1552, 1983, 2546, 2876
FatI	CATG	9 cut(s)	651, 1032, 1806, 2050, 2472, 2503, 2662, 2718, 3168
FauNDI	CATATG	1 cut(s)	3218
FblI	GTMKAC	2 cut(s)	52, 954
FokI	GGATG	6 cut(s)	473, 862, 1196, 1502, 1879, 2621
FriOI	GRGCYC	6 cut(s)	399, 816, 1089, 1170, 1776, 3075
FspBI	CTAG	2 cut(s)	743, 2940
GlaI	GCGC	4 cut(s)	235, 253, 1135, 2064
GsaI	CCCAGC	2 cut(s)	1010, 2277
GsuI	CTGGAG	7 cut(s)	20, 953, 1154, 1298, 2739, 2945, 3132
HaeII	RGCGCY	1 cut(s)	1137
HaeIII	GGCC	9 cut(s)	516, 699, 720, 1351, 1371, 1533, 2147, 2561, 3073
HgaI	GACGC	2 cut(s)	902, 1588
HhaI	GCGC	4 cut(s)	236, 254, 1136, 2065
Hin1I	GRCGYC	3 cut(s)	894, 1134, 1599
Hin1II	CATG	9 cut(s)	655, 1036, 1810, 2054, 2476, 2507, 2666, 2722, 3172
Hin6I	GCGC	4 cut(s)	234, 252, 1134, 2063
HinP1I	GCGC	4 cut(s)	234, 252, 1134, 2063
HincII	GTYRAC	3 cut(s)	955, 996, 1272
HindII	GTYRAC	3 cut(s)	955, 996, 1272
HindIII	AAGCTT	2 cut(s)	1238, 1454
Hpy99I	CGWCG	5 cut(s)	896, 1622, 1757, 1867, 2798
HpyAV	CCTTC	7 cut(s)	568, 836, 1786, 2236, 2770, 2909, 2958
HpyCH4III	ACNGT	6 cut(s)	218, 595, 905, 1310, 2218, 2601
HpyCH4IV	ACGT	9 cut(s)	372, 543, 2619, 2708, 2796, 2976, 2985, 3022, 3158
HpyF3I	CTNAG	6 cut(s)	295, 567, 1215, 1385, 1760, 3212
HpySE526I	ACGT	9 cut(s)	372, 543, 2619, 2708, 2796, 2976, 2985, 3022, 3158
Hsp92I	GRCGYC	3 cut(s)	894, 1134, 1599
Hsp92II	CATG	9 cut(s)	655, 1036, 1810, 2054, 2476, 2507, 2666, 2722, 3172
HspAI	GCGC	4 cut(s)	234, 252, 1134, 2063
KasI	GGCGCC	1 cut(s)	1133
KflI	GGGWCCC	2 cut(s)	482, 1566
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
LguI	GCTCTTC	1 cut(s)	2783
LmnI	GCTCC	8 cut(s)	189, 1084, 1131, 1165, 1173, 2291, 2484, 2758
Lsp1109I	GCAGC	6 cut(s)	930, 1192, 1218, 1681, 1866, 2144
LweI	GCATC	3 cut(s)	840, 1218, 3146
MaeI	CTAG	2 cut(s)	743, 2940
MaeII	ACGT	9 cut(s)	372, 543, 2619, 2708, 2796, 2976, 2985, 3022, 3158
MalI	GATC	6 cut(s)	704, 1394, 1758, 2117, 2606, 3207
MboI	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
MflI	RGATCY	2 cut(s)	702, 1392
MhlI	GDGCHC	8 cut(s)	399, 816, 1089, 1170, 1776, 1940, 2114, 3075
MluCI	AATT	8 cut(s)	761, 861, 1960, 2397, 2547, 2650, 2855, 3048
Mly113I	GGCGCC	1 cut(s)	1134
Mph1103I	ATGCAT	1 cut(s)	2767
MroXI	GAANNNNTTC	6 cut(s)	473, 1112, 1196, 1628, 2499, 3042
MseI	TTAA	3 cut(s)	797, 911, 1703
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	230
Mva1269I	GAATGC	3 cut(s)	982, 1857, 2195
MvaI	CCWGG	5 cut(s)	310, 971, 1172, 2963, 3150
MvnI	CGCG	3 cut(s)	230, 252, 2375
NarI	GGCGCC	1 cut(s)	1134
NciI	CCSGG	5 cut(s)	394, 1071, 1935, 2149, 3075
NcoI	CCATGG	1 cut(s)	1032
NdeI	CATATG	1 cut(s)	3218
NdeII	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
NlaIII	CATG	9 cut(s)	655, 1036, 1810, 2054, 2476, 2507, 2666, 2722, 3172
NmeAIII	GCCGAG	3 cut(s)	490, 1347, 1509
NmuCI	GTSAC	6 cut(s)	26, 373, 643, 2306, 2519, 3192
NsiI	ATGCAT	1 cut(s)	2767
NspI	RCATGY	3 cut(s)	2054, 2476, 2722
NspV	TTCGAA	1 cut(s)	2655
PaeR7I	CTCGAG	1 cut(s)	734
PaqCI	CACCTGC	1 cut(s)	3133
PciI	ACATGT	1 cut(s)	2050
PciSI	GCTCTTC	1 cut(s)	2783
PcsI	WCGNNNNNNNCGW	3 cut(s)	888, 1374, 2982
PctI	GAATGC	3 cut(s)	982, 1857, 2195
PdmI	GAANNNNTTC	6 cut(s)	473, 1112, 1196, 1628, 2499, 3042
PflFI	GACNNNGTC	2 cut(s)	2024, 2876
PflMI	CCANNNNNTGG	1 cut(s)	2206
PfoI	TCCNGGA	1 cut(s)	2961
PinAI	ACCGGT	1 cut(s)	2845
PluTI	GGCGCC	1 cut(s)	1137
Ppu21I	YACGTR	3 cut(s)	373, 2977, 2986
PpuMI	RGGWCCY	4 cut(s)	482, 922, 1566, 2349
PscI	ACATGT	1 cut(s)	2050
PshAI	GACNNNNGTC	1 cut(s)	1751
Psp124BI	GAGCTC	4 cut(s)	816, 1089, 1170, 1776
Psp5II	RGGWCCY	4 cut(s)	482, 922, 1566, 2349
Psp6I	CCWGG	5 cut(s)	308, 969, 1170, 2961, 3148
PspEI	GGTNACC	1 cut(s)	1010
PspFI	CCCAGC	2 cut(s)	1006, 2273
PspGI	CCWGG	5 cut(s)	308, 969, 1170, 2961, 3148
PspOMI	GGGCCC	1 cut(s)	3071
PspPPI	RGGWCCY	4 cut(s)	482, 922, 1566, 2349
PspXI	VCTCGAGB	1 cut(s)	734
PstI	CTGCAG	2 cut(s)	1182, 2697
PstNI	CAGNNNCTG	2 cut(s)	330, 1177
PsuI	RGATCY	2 cut(s)	702, 1392
PsyI	GACNNNGTC	2 cut(s)	2024, 2876
RsaI	GTAC	5 cut(s)	740, 2285, 2471, 2543, 3154
RsaNI	GTAC	5 cut(s)	739, 2284, 2470, 2542, 3153
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	4 cut(s)	816, 1089, 1170, 1776
SacII	CCGCGG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	953
SapI	GCTCTTC	1 cut(s)	2783
SaqAI	TTAA	3 cut(s)	797, 911, 1703
Sau3AI	GATC	6 cut(s)	702, 1392, 1756, 2115, 2604, 3205
SbfI	CCTGCAGG	1 cut(s)	2697
SdaI	CCTGCAGG	1 cut(s)	2697
SduI	GDGCHC	8 cut(s)	399, 816, 1089, 1170, 1776, 1940, 2114, 3075
SfaNI	GCATC	3 cut(s)	840, 1218, 3146
SfcI	CTRYAG	2 cut(s)	1178, 2693
SfoI	GGCGCC	1 cut(s)	1135
Sfr274I	CTCGAG	1 cut(s)	734
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	2655
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	7 cut(s)	312, 339, 482, 922, 1566, 1997, 2349
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	3 cut(s)	734, 1016, 1088
SmoI	CTYRAG	3 cut(s)	734, 1016, 1088
Sse8387I	CCTGCAGG	1 cut(s)	2697
Sse9I	AATT	8 cut(s)	761, 861, 1960, 2397, 2547, 2650, 2855, 3048
SspDI	GGCGCC	1 cut(s)	1133
SspMI	CTAG	2 cut(s)	743, 2940
SstI	GAGCTC	4 cut(s)	816, 1089, 1170, 1776
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	6 cut(s)	218, 595, 905, 1310, 2218, 2601
TaiI	ACGT	9 cut(s)	375, 546, 2622, 2711, 2799, 2979, 2988, 3025, 3161
TaqII	GACCGA	2 cut(s)	1523, 3071
TasI	AATT	8 cut(s)	761, 861, 1960, 2397, 2547, 2650, 2855, 3048
TatI	WGTACW	2 cut(s)	2283, 2469
TauI	GCSGC	9 cut(s)	184, 369, 723, 856, 899, 2564, 2838, 3121, 3202
Tru1I	TTAA	3 cut(s)	797, 911, 1703
Tru9I	TTAA	3 cut(s)	797, 911, 1703
TscAI	CASTG	5 cut(s)	335, 1207, 1945, 2074, 3021
TseFI	GTSAC	6 cut(s)	26, 373, 643, 2306, 2519, 3192
TseI	GCWGC	6 cut(s)	943, 1180, 1206, 1669, 1854, 2132
Tsp45I	GTSAC	6 cut(s)	26, 373, 643, 2306, 2519, 3192
TspDTI	ATGAA	4 cut(s)	17, 1896, 2492, 3185
TspGWI	ACGGA	5 cut(s)	631, 1851, 1885, 2379, 2880
TspRI	CASTG	5 cut(s)	335, 1207, 1945, 2074, 3021
Tth111I	GACNNNGTC	2 cut(s)	2024, 2876
Van91I	CCANNNNNTGG	1 cut(s)	2206
VpaK11BI	GGWCC	7 cut(s)	312, 339, 482, 922, 1566, 1997, 2349
XapI	RAATTY	3 cut(s)	2397, 2855, 3048
XceI	RCATGY	3 cut(s)	2054, 2476, 2722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2485
XhoI	CTCGAG	1 cut(s)	734
XmiI	GTMKAC	2 cut(s)	52, 954
XmnI	GAANNNNTTC	6 cut(s)	473, 1112, 1196, 1628, 2499, 3042
XspI	CTAG	2 cut(s)	743, 2940
Zsp2I	ATGCAT	1 cut(s)	2767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.