Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012855

Physical Location & Seq

Genomic Coordinates Forward (+)

71587209 .. 71590981

Gene Structure 3773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2988 bp

ATGTCCACCTACCGGGCCCTCCTCTCCCTCAAGGCCTCCATCACCGACGACCCCGACTCCCGCCTCTCCTCCTGGACCCCCAACACCAGCCACTGCACCTGGGAAGGCGTCACGTGCGACTCCCGCCGTCACGTGACCTCCCTCGACCTTTCCGGCTTGAATCTCTCCGGCTACCTCTCCCCCGATATCGCCCACCTTGTCTACCTCTCTAACCTTACTCTCGCTGACAACACGTTCTCGGGTCCCATCCCGCCCGAGATCTCGGCCCTCTCGGGGCTCCGACTCCTCAACCTATCCAACAACGTCTTCAACCGCACATTCCCGCCGGAGCTCTCCAGCCTCACAAACCTCCGCGTGCTCGACCTCTACAACAACAACTTGACCGGAGTATTGCCGGTGTCAGTGACCCAGATGACCAACCTCAGGCACTTGCATTTGGGAGGCAACTTTTTCGAGGGTTCGATCCCGCCGGAGTACGGCCGGTTCCCGTTTCTCGAGTACTTGGCCGTCTCCGGCAACTCGATCACCGGCAAAATCCCCAAGGAGATTGGAAACCTGACCAGGCTCAAGGAGCTTTACATTGGCTACTACAACAGCTACGACGGCGGCATACCGGCCGAGATCGGGAACTTGACCGAACTCGTCCGGTTCGACGCCGCCAACTGCAATTTATCCGGCGAGATCCCGCCGGAACTGGGTCGGTTGCAAAATGTGGATACTCTGTTTCTCCAGGTGAATGCGCTTTCGGGGTCATTGACGTCTGAGCTGGGCTACCTCAAAAGCTTGAAATCCATGGACTTATCCAACAACCTGTTCTCCGGCGAGATTCCGGTCTCCTTCGCAGAGCTAAAGAACCTGACGCTTCTCAATCTCTTCCGGAACCAGCTTCACGGCGCCATTCCCGACTTCATCGGTGACTTGCCGGAGCTCCAGGTTCTGCAGCTGTGGGAGAACAACTTCACTGGGTCTATTCCTCAGGGTTTGGGCAGAAATGGGAAGCTTCAAATCCTCGACTTGTCTTCGAACAAATTGACAGGGGCTCTTCCTCCTGATATGTGCTCAGGAAACAATCTTCAAACCCTCATCACTCTCGGTAACTTTCTCTTCGGTCCGATTCCAGAGTCACTCGGAGACTGCCAGTCACTGAGTCGGATTCGAATGGGTGAGAACTTTCTAAATGGGTCGATTCCTAAAGGTCTATTTGGGTTGCCCAAACTCACTCAAGTGGAGCTTCAAGACAATTTCTTAGGCGGTTCATTCCCAGAGTCTGATTCAATCTCTGGTGGTCTCGGTCAGATTAGTCTCTCCAACAATCGGTTATCCGGGCCCTTGCCCCCGACCATCGGAAACTTCTCCGGCGTCCAGAAGCTTCTCCTTGACGGGAACAAGTTCTCGGGTCGAATCCCGCCGGAGATTGGACGCCTGCAGCAACTTTCAAAGATTGATTTTAGCCACAACATGTTTTCGGGTCCAGTTGCGCCGGAGATCAGCCAATGCAAGCTGCTGACGTTTGTTGATCTCAGTCGGAATGATCTCTCCGGTGAGATCCCGAAAGAGATTACGGGTATGAGGATACTGAATTACCTCAATCTCTCGAGGAACCATCTTGTGGGGAGCATCCCATCTTCCATTTCCTCAATGCAAAGCTTAACCTCAGTGGATTTTTCGTATAACAATCTTTCGGGTTTGGTTCCGGGGACTGGTCAGTTCAGCTACTTCAATTACACTTCGTTTTTGGGCAACTCTGGTCTTTGTGGTCCCTATTTGGTTCCTTGCAAAGATGGGGTTGCAAATGGCAGTCATCAGCCTCATGTCAAAAGCTCATTCACTGCTTCATTGAAGCTATTGCTTGTTGTGGGGTTGCTACTTTGCTCCATCATATTTGCAGTTATTACAATAATCAAAGCTCGATCGTACAAGAGAGAAAGGGATTCCAGAGCTTGGAAGTTGACTGCATTCCAGCGCTTGGATTTCACTGTTGATGATGTCTTGGATTCACTGAAGGAAGACAACATTATAGGCAAGGGAGGTGCTGGGATTGTGTACAAAGGCGCTATGCCTGGTGGTGACAATGTGGCTGTGAAAAGACTCCCTGCAATGAGCAGAGGCTCATCTCATGATCATGGATTCAATGCCGAGATCCAGACTCTGGGTCGAATTCGACACCGTCACATTGTTAGATTGTTGGGTTTCTGTTCAAACCATGAGACAAATCTTCTGGTCTATGAGTACATGCCTAATGGGAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGAGGTCACTTGCATTGGGATACAAGGTACAAGATTGCTATTGAAGCTGCAAAGGGGCTTTGCTATCTTCACCATGACTGTTCGCCTCTGATAGTCCATAGAGATGTGAAATCGAATAACATTCTCCTCGACTCCAATTTTGAGGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCCTTCAGGATTCCGGCACGTCCGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATACATCGCTCCAGAGTATGCTTACACACTGAAGGTCGATGAGAAGAGCGACGTCTATAGTTTCGGTGTAGTTCTCTTAGAACTTGTTAGTGGCAAGAAACCAGTTGGTGAATTTGGTGATGGAGTCGATATAGTCCAATGGGTTCGGAAAATGACGGATTCAAACAAGGAAGGAGTCCTGAAGATCCTTGATTCCAGACTCCCGTCTGTTCCCCTACATGAGGTTATGCACGTATTTTACGTCGCAATGCTCTGCGTTGAAGAACAAGCAGTGGAACGTCCCACGATGAGAGAAGTGGTTCAAATTCTTACAGAGCTTCCAATTCCACCAGGCTCAAAGCAAGGAGGAGACACAACAACAATCACAGACTCCCCTCAACAATCTGCCATTACTGCAATGGAATCACCAACTACCACAAAAGACACGAAAGACCATCAACAGCCACCGCCACAATCACCACCGCCGGATCTTCTAAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

995

Amino Acids

108.53

Weight (kDa)

5.94

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	5 - 40	1.7e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	92 - 149	1.6e-06	Leucine rich repeat
LRR_14	PF23598	109 - 247	3.1e-14	Leucine-rich repeat region
LRR_4	PF12799	115 - 149	2.6e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	250 - 388	3.3e-07	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	669 - 938	2.6e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	669 - 936	6.3e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49670 AT5G65700 AT5G65700
fragaria_vesca	FvH4_1g18710
malus_domestica	MD02G1194600.v1.1 MD15G1304900.v1.1
prunus_persica	Prupe.6G212200_v2.0.a1
pyrus_communis	pycom02g15850 pycom15g26730
rosa_chinensis	RchiOBHm_Chr2g0109581
rosa_laevigata	RLG00000017747
rosa_multiflora	Rmu_sc0000332.1_g000045
rosa_roxburghii	Rroxscaffold_2G00134130
rosa_rugosa	Rorug02G0160800
rosa_samantha	Rh2AG213200 Rh2BG223400 Rh2CG215200 Rh2DG218700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	761, 2559
AccB1I	GGYRCC	1 cut(s)	893
AccB7I	CCANNNNNTGG	4 cut(s)	1609, 1941, 1966, 2149
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	876
AclWI	GGATC	6 cut(s)	457, 676, 1540, 2134, 2683, 2979
AcoI	YGGCCR	3 cut(s)	478, 504, 615
AcsI	RAATTY	3 cut(s)	2157, 2615, 2808
AcuI	CTGAAG	4 cut(s)	2021, 2438, 2555, 2705
AcvI	CACGTG	2 cut(s)	114, 133
AcyI	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
AfaI	GTAC	6 cut(s)	476, 500, 1916, 2045, 2231, 2303
AfeI	AGCGCT	1 cut(s)	1964
AflIII	ACRYGT	2 cut(s)	231, 1458
AhdI	GACNNNNNGTC	2 cut(s)	1138, 2151
AjiI	CACGTC	1 cut(s)	2469
AjnI	CCWGG	7 cut(s)	71, 98, 560, 729, 930, 2059, 2833
AjuI	GAANNNNNNNTTGG	4 cut(s)	290, 322, 797, 829
AleI	CACNNNNGTG	1 cut(s)	1223
Alw21I	GWGCWC	4 cut(s)	333, 360, 930, 1061
Alw26I	GTCTC	7 cut(s)	514, 838, 1125, 1292, 1307, 2201, 2847
AlwI	GGATC	6 cut(s)	457, 676, 1540, 2134, 2683, 2979
AlwNI	CAGNNNCTG	5 cut(s)	93, 937, 1144, 1268, 2149
Ama87I	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
Aor13HI	TCCGGA	1 cut(s)	876
Aor51HI	AGCGCT	1 cut(s)	1964
AoxI	GGCC	8 cut(s)	15, 33, 264, 478, 504, 615, 1325, 2437
ApaI	GGGCCC	2 cut(s)	19, 1329
ApeKI	GCWGC	4 cut(s)	940, 1426, 1501, 2321
ApoI	RAATTY	3 cut(s)	2157, 2615, 2808
ArsI	GACNNNNNNTTYG	2 cut(s)	2396, 2428
Asp700I	GAANNNNTTC	3 cut(s)	956, 1388, 2802
AspLEI	GCGC	5 cut(s)	742, 896, 1480, 1965, 2054
AsuC2I	CCSGG	3 cut(s)	14, 1324, 1695
AsuII	TTCGAA	2 cut(s)	1022, 1156
AvaI	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
AvaII	GGWCC	5 cut(s)	75, 242, 1109, 1469, 1757
AxyI	CCTNAGG	2 cut(s)	422, 975
BaeGI	GKGCMC	2 cut(s)	19, 1329
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	6 cut(s)	19, 279, 333, 930, 1042, 1329
BbrPI	CACGTG	2 cut(s)	114, 133
BbsI	GAAGAC	3 cut(s)	298, 1011, 2013
Bbv12I	GWGCWC	4 cut(s)	333, 360, 930, 1061
BbvI	GCAGC	4 cut(s)	952, 1438, 1488, 2308
BccI	CCATC	9 cut(s)	47, 254, 1349, 1611, 1630, 1775, 1883, 2618, 2946
BceAI	ACGGC	5 cut(s)	111, 491, 493, 619, 907
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BciT130I	CCWGG	7 cut(s)	73, 100, 562, 731, 932, 2061, 2835
BciVI	GTATCC	4 cut(s)	709, 1566, 2287, 2498
BclI	TGATCA	1 cut(s)	2119
BcnI	CCSGG	3 cut(s)	14, 1324, 1695
BcoDI	GTCTC	7 cut(s)	514, 838, 1125, 1292, 1307, 2201, 2847
BfmI	CTRYAG	3 cut(s)	938, 1424, 2560
BfoI	RGCGCY	3 cut(s)	897, 1966, 2055
BfuI	GTATCC	4 cut(s)	709, 1566, 2287, 2498
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	6 cut(s)	607, 657, 941, 1427, 1502, 2322
BlsI	GCNGC	6 cut(s)	608, 658, 942, 1428, 1503, 2323
BmcAI	AGTACT	1 cut(s)	500
Bme18I	GGWCC	5 cut(s)	75, 242, 1109, 1469, 1757
BmeRI	GACNNNNNGTC	2 cut(s)	1138, 2151
BmeT110I	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
BmgBI	CACGTC	1 cut(s)	2469
BmrI	ACTGGG	2 cut(s)	704, 972
BmsI	GCATC	1 cut(s)	1626
BmuI	ACTGGG	2 cut(s)	704, 972
BoxI	GACNNNNGTC	1 cut(s)	2707
BpiI	GAAGAC	3 cut(s)	298, 1011, 2013
BpmI	CTGGAG	4 cut(s)	319, 713, 914, 2499
Bpu10I	CCTNAGC	1 cut(s)	1060
Bpu14I	TTCGAA	2 cut(s)	1022, 1156
BpuEI	CTTGAG	3 cut(s)	14, 551, 1206
BpuMI	CCSGG	3 cut(s)	14, 1324, 1695
BsaAI	YACGTR	3 cut(s)	114, 133, 2737
BsaHI	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
BsaI	GGTCTC	2 cut(s)	838, 1292
BsaJI	CCNNGG	4 cut(s)	99, 540, 792, 1694
BsaWI	WCCGGW	5 cut(s)	383, 645, 829, 876, 1538
BsaXI	ACNNNNNCTCC	8 cut(s)	41, 71, 122, 152, 800, 830, 2236, 2266
Bse118I	RCCGGY	4 cut(s)	394, 480, 527, 613
Bse1I	ACTGG	6 cut(s)	699, 967, 1138, 1472, 1705, 2606
Bse21I	CCTNAGG	2 cut(s)	422, 975
Bse3DI	GCAATG	4 cut(s)	2103, 2487, 2757, 2907
BseAI	TCCGGA	1 cut(s)	876
BseBI	CCWGG	7 cut(s)	73, 100, 562, 731, 932, 2061, 2835
BseDI	CCNNGG	4 cut(s)	99, 540, 792, 1694
BseGI	GGATG	2 cut(s)	246, 1617
BseMI	GCAATG	4 cut(s)	2103, 2487, 2757, 2907
BseMII	CTCAG	7 cut(s)	436, 753, 989, 1074, 1136, 1534, 1668
BseNI	ACTGG	6 cut(s)	699, 967, 1138, 1472, 1705, 2606
BseRI	GAGGAG	5 cut(s)	11, 58, 275, 2390, 2865
BseSI	GKGCMC	2 cut(s)	19, 1329
BseX3I	CGGCCG	2 cut(s)	478, 615
BseXI	GCAGC	4 cut(s)	952, 1438, 1488, 2308
BseYI	CCCAGC	2 cut(s)	766, 2033
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	3 cut(s)	481, 618, 1913
BshFI	GGCC	8 cut(s)	17, 35, 266, 480, 506, 617, 1327, 2439
BshNI	GGYRCC	1 cut(s)	893
BsiEI	CGRYCG	3 cut(s)	481, 618, 1913
BsiHKAI	GWGCWC	4 cut(s)	333, 360, 930, 1061
BsiHKCI	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
BslFI	GGGAC	4 cut(s)	228, 1711, 1743, 2769
BsmAI	GTCTC	7 cut(s)	514, 838, 1125, 1292, 1307, 2201, 2847
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	4 cut(s)	228, 1711, 1743, 2769
BsmI	GAATGC	2 cut(s)	742, 1955
BsnI	GGCC	8 cut(s)	17, 35, 266, 480, 506, 617, 1327, 2439
Bso31I	GGTCTC	2 cut(s)	838, 1292
BsoBI	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
Bsp119I	TTCGAA	2 cut(s)	1022, 1156
Bsp120I	GGGCCC	2 cut(s)	15, 1325
Bsp1286I	GDGCHC	8 cut(s)	19, 279, 333, 360, 930, 1042, 1061, 1329
Bsp13I	TCCGGA	1 cut(s)	876
Bsp1407I	TGTACA	1 cut(s)	2043
Bsp19I	CCATGG	1 cut(s)	792
BspANI	GGCC	8 cut(s)	17, 35, 266, 480, 506, 617, 1327, 2439
BspCNI	CTCAG	7 cut(s)	435, 754, 988, 1073, 1137, 1533, 1667
BspEI	TCCGGA	1 cut(s)	876
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	2116
BspMAI	CTGCAG	2 cut(s)	942, 1428
BspPI	GGATC	6 cut(s)	457, 676, 1540, 2134, 2683, 2979
BspQI	GCTCTTC	2 cut(s)	1047, 2543
BspT104I	TTCGAA	2 cut(s)	1022, 1156
BspT107I	GGYRCC	1 cut(s)	893
BspTNI	GGTCTC	2 cut(s)	838, 1292
BsrDI	GCAATG	4 cut(s)	2103, 2487, 2757, 2907
BsrFI	RCCGGY	4 cut(s)	394, 480, 527, 613
BsrGI	TGTACA	1 cut(s)	2043
BsrI	ACTGG	6 cut(s)	699, 967, 1138, 1472, 1705, 2606
BssAI	RCCGGY	4 cut(s)	394, 480, 527, 613
BssECI	CCNNGG	4 cut(s)	99, 540, 792, 1694
BssNI	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
BssT1I	CCWWGG	2 cut(s)	540, 792
Bst2UI	CCWGG	7 cut(s)	73, 100, 562, 731, 932, 2061, 2835
Bst4CI	ACNGT	3 cut(s)	1978, 2168, 2354
Bst6I	CTCTTC	4 cut(s)	878, 1047, 1109, 2543
BstACI	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
BstAUI	TGTACA	1 cut(s)	2043
BstBAI	YACGTR	3 cut(s)	114, 133, 2737
BstBI	TTCGAA	2 cut(s)	1022, 1156
BstC8I	GCNNGC	3 cut(s)	356, 1424, 1499
BstDSI	CCRYGG	1 cut(s)	792
BstENI	CCTNNNNNAGG	1 cut(s)	2723
BstF5I	GGATG	2 cut(s)	246, 1617
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	3 cut(s)	897, 1966, 2055
BstHHI	GCGC	5 cut(s)	742, 896, 1480, 1965, 2054
BstMAI	GTCTC	7 cut(s)	514, 838, 1125, 1292, 1307, 2201, 2847
BstMCI	CGRYCG	3 cut(s)	481, 618, 1913
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 123, 571, 603, 2318, 2426, 2897
BstNI	CCWGG	7 cut(s)	73, 100, 562, 731, 932, 2061, 2835
BstNSI	RCATGY	3 cut(s)	1462, 2236, 2482
BstPAI	GACNNNNGTC	1 cut(s)	2707
BstSFI	CTRYAG	3 cut(s)	938, 1424, 2560
BstSLI	GKGCMC	2 cut(s)	19, 1329
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	4 cut(s)	952, 1438, 1488, 2308
BstV2I	GAAGAC	3 cut(s)	298, 1011, 2013
BstX2I	RGATCY	6 cut(s)	258, 681, 1545, 2139, 2688, 2971
BstYI	RGATCY	6 cut(s)	258, 681, 1545, 2139, 2688, 2971
BstZI	CGGCCG	2 cut(s)	478, 615
Bsu36I	CCTNAGG	2 cut(s)	422, 975
BsuI	GTATCC	4 cut(s)	709, 1566, 2287, 2498
BsuRI	GGCC	8 cut(s)	17, 35, 266, 480, 506, 617, 1327, 2439
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	2494
BtrI	CACGTC	1 cut(s)	2469
BtsCI	GGATG	2 cut(s)	246, 1617
BtsI	GCAGTG	3 cut(s)	91, 1827, 2781
Cac8I	GCNNGC	3 cut(s)	356, 1424, 1499
CaiI	CAGNNNCTG	5 cut(s)	93, 937, 1144, 1268, 2149
CciI	TCATGA	1 cut(s)	2116
CfoI	GCGC	5 cut(s)	742, 896, 1480, 1965, 2054
Cfr10I	RCCGGY	4 cut(s)	394, 480, 527, 613
CpoI	CGGWCCG	1 cut(s)	1109
CseI	GACGC	5 cut(s)	97, 662, 868, 1348, 1428
Csp6I	GTAC	6 cut(s)	475, 499, 1915, 2044, 2230, 2302
CspI	CGGWCCG	1 cut(s)	1109
CviQI	GTAC	6 cut(s)	475, 499, 1915, 2044, 2230, 2302
DinI	GGCGCC	1 cut(s)	895
DriI	GACNNNNNGTC	2 cut(s)	1138, 2151
EaeI	YGGCCR	3 cut(s)	478, 504, 615
EagI	CGGCCG	2 cut(s)	478, 615
Eam1104I	CTCTTC	4 cut(s)	878, 1047, 1109, 2543
Eam1105I	GACNNNNNGTC	2 cut(s)	1138, 2151
EarI	CTCTTC	4 cut(s)	878, 1047, 1109, 2543
Ecl136II	GAGCTC	2 cut(s)	331, 928
EclXI	CGGCCG	2 cut(s)	478, 615
Eco130I	CCWWGG	2 cut(s)	540, 792
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	6 cut(s)	19, 279, 333, 930, 1042, 1329
Eco31I	GGTCTC	2 cut(s)	838, 1292
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	5 cut(s)	75, 242, 1109, 1469, 1757
Eco47III	AGCGCT	1 cut(s)	1964
Eco52I	CGGCCG	2 cut(s)	478, 615
Eco53kI	GAGCTC	2 cut(s)	331, 928
Eco57I	CTGAAG	4 cut(s)	2021, 2438, 2555, 2705
Eco72I	CACGTG	2 cut(s)	114, 133
Eco81I	CCTNAGG	2 cut(s)	422, 975
Eco88I	CYCGRG	6 cut(s)	238, 254, 271, 494, 1393, 1594
EcoICRI	GAGCTC	2 cut(s)	331, 928
EcoNI	CCTNNNNNAGG	1 cut(s)	2723
EcoO109I	RGGNCCY	3 cut(s)	16, 242, 1326
EcoRI	GAATTC	1 cut(s)	2157
EcoRII	CCWGG	7 cut(s)	71, 98, 560, 729, 930, 2059, 2833
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	540, 792
EcoT38I	GRGCYC	6 cut(s)	19, 279, 333, 930, 1042, 1329
EgeI	GGCGCC	1 cut(s)	895
EheI	GGCGCC	1 cut(s)	895
ErhI	CCWWGG	2 cut(s)	540, 792
Esp3I	CGTCTC	1 cut(s)	514
FalI	AAGNNNNNCTT	2 cut(s)	1215, 1247
FaqI	GGGAC	4 cut(s)	228, 1711, 1743, 2769
FauI	CCCGC	7 cut(s)	68, 131, 258, 330, 474, 693, 1413
FbaI	TGATCA	1 cut(s)	2119
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	607, 657, 941, 1427, 1502, 2322
FokI	GGATG	2 cut(s)	233, 1604
FriOI	GRGCYC	6 cut(s)	19, 279, 333, 930, 1042, 1329
Fsp4HI	GCNGC	6 cut(s)	607, 657, 941, 1427, 1502, 2322
GlaI	GCGC	5 cut(s)	741, 895, 1479, 1964, 2053
GluI	GCNGC	6 cut(s)	607, 657, 941, 1427, 1502, 2322
GsaI	CCCAGC	2 cut(s)	770, 2037
GsuI	CTGGAG	4 cut(s)	319, 713, 914, 2499
HaeII	RGCGCY	3 cut(s)	897, 1966, 2055
HaeIII	GGCC	8 cut(s)	17, 35, 266, 480, 506, 617, 1327, 2439
HgaI	GACGC	5 cut(s)	97, 662, 868, 1348, 1428
HhaI	GCGC	5 cut(s)	742, 896, 1480, 1965, 2054
Hin1I	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
Hin6I	GCGC	5 cut(s)	740, 894, 1478, 1963, 2052
HinP1I	GCGC	5 cut(s)	740, 894, 1478, 1963, 2052
HincII	GTYRAC	1 cut(s)	1950
HindII	GTYRAC	1 cut(s)	1950
HindIII	AAGCTT	4 cut(s)	781, 998, 1367, 1645
Hpy166II	GTNNAC	4 cut(s)	6, 202, 1950, 2044
Hpy8I	GTNNAC	4 cut(s)	6, 202, 1950, 2044
Hpy99I	CGWCG	5 cut(s)	50, 605, 656, 2558, 2750
HpyAV	CCTTC	6 cut(s)	98, 847, 1996, 2462, 2530, 2669
HpyCH4III	ACNGT	3 cut(s)	1978, 2168, 2354
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 123, 571, 603, 2318, 2426, 2897
Hsp92I	GRCGYC	7 cut(s)	108, 654, 758, 894, 1359, 1420, 2556
HspAI	GCGC	5 cut(s)	740, 894, 1478, 1963, 2052
KasI	GGCGCC	1 cut(s)	893
KflI	GGGWCCC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	2119
LguI	GCTCTTC	2 cut(s)	1047, 2543
LmnI	GCTCC	9 cut(s)	282, 328, 571, 925, 933, 1228, 1614, 1877, 2518
Lsp1109I	GCAGC	4 cut(s)	952, 1438, 1488, 2308
LweI	GCATC	1 cut(s)	1626
MflI	RGATCY	6 cut(s)	258, 681, 1545, 2139, 2688, 2971
MhlI	GDGCHC	8 cut(s)	19, 279, 333, 360, 930, 1042, 1061, 1329
Mly113I	GGCGCC	1 cut(s)	894
MmeI	TCCRAC	6 cut(s)	304, 321, 828, 1130, 1332, 1505
MroI	TCCGGA	1 cut(s)	876
MroXI	GAANNNNTTC	3 cut(s)	956, 1388, 2802
MseI	TTAA	1 cut(s)	1649
MslI	CAYNNNNRTG	3 cut(s)	1223, 2121, 2376
MspA1I	CMGCKG	1 cut(s)	943
Mva1269I	GAATGC	2 cut(s)	742, 1955
MvaI	CCWGG	7 cut(s)	73, 100, 562, 731, 932, 2061, 2835
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	7 cut(s)	114, 123, 571, 603, 2318, 2426, 2897
NarI	GGCGCC	1 cut(s)	894
NciI	CCSGG	3 cut(s)	14, 1324, 1695
NcoI	CCATGG	1 cut(s)	792
NmeAIII	GCCGAG	3 cut(s)	242, 643, 2161
NspI	RCATGY	3 cut(s)	1462, 2236, 2482
NspV	TTCGAA	2 cut(s)	1022, 1156
OliI	CACNNNNGTG	1 cut(s)	1223
PaeR7I	CTCGAG	2 cut(s)	494, 1594
PagI	TCATGA	1 cut(s)	2116
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	1 cut(s)	1458
PciSI	GCTCTTC	2 cut(s)	1047, 2543
PcsI	WCGNNNNNNNCGW	2 cut(s)	648, 2742
PctI	GAATGC	2 cut(s)	742, 1955
PdmI	GAANNNNTTC	3 cut(s)	956, 1388, 2802
PflFI	GACNNNGTC	1 cut(s)	2166
PflMI	CCANNNNNTGG	4 cut(s)	1609, 1941, 1966, 2149
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	608, 658, 942, 1428, 1503, 2323
Ple19I	CGATCG	1 cut(s)	1913
PluTI	GGCGCC	1 cut(s)	897
PmaCI	CACGTG	2 cut(s)	114, 133
PmlI	CACGTG	2 cut(s)	114, 133
Ppu21I	YACGTR	3 cut(s)	114, 133, 2737
PpuMI	RGGWCCY	1 cut(s)	242
PscI	ACATGT	1 cut(s)	1458
PshAI	GACNNNNGTC	1 cut(s)	2707
Psp124BI	GAGCTC	2 cut(s)	333, 930
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	7 cut(s)	71, 98, 560, 729, 930, 2059, 2833
PspCI	CACGTG	2 cut(s)	114, 133
PspFI	CCCAGC	2 cut(s)	766, 2033
PspGI	CCWGG	7 cut(s)	71, 98, 560, 729, 930, 2059, 2833
PspOMI	GGGCCC	2 cut(s)	15, 1325
PspPPI	RGGWCCY	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PstI	CTGCAG	2 cut(s)	942, 1428
PstNI	CAGNNNCTG	5 cut(s)	93, 937, 1144, 1268, 2149
PsuI	RGATCY	6 cut(s)	258, 681, 1545, 2139, 2688, 2971
PsyI	GACNNNGTC	1 cut(s)	2166
PvuI	CGATCG	1 cut(s)	1913
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	6 cut(s)	476, 500, 1916, 2045, 2231, 2303
RsaNI	GTAC	6 cut(s)	475, 499, 1915, 2044, 2230, 2302
RseI	CAYNNNNRTG	3 cut(s)	1223, 2121, 2376
Rsr2I	CGGWCCG	1 cut(s)	1109
RsrII	CGGWCCG	1 cut(s)	1109
SacI	GAGCTC	2 cut(s)	333, 930
SapI	GCTCTTC	2 cut(s)	1047, 2543
SaqAI	TTAA	1 cut(s)	1649
SatI	GCNGC	6 cut(s)	607, 657, 941, 1427, 1502, 2322
ScaI	AGTACT	1 cut(s)	500
SduI	GDGCHC	8 cut(s)	19, 279, 333, 360, 930, 1042, 1061, 1329
SfaNI	GCATC	1 cut(s)	1626
SfcI	CTRYAG	3 cut(s)	938, 1424, 2560
SfoI	GGCGCC	1 cut(s)	895
Sfr274I	CTCGAG	2 cut(s)	494, 1594
SfuI	TTCGAA	2 cut(s)	1022, 1156
SinI	GGWCC	5 cut(s)	75, 242, 1109, 1469, 1757
SlaI	CTCGAG	2 cut(s)	494, 1594
SmiMI	CAYNNNNRTG	3 cut(s)	1223, 2121, 2376
SmlI	CTYRAG	5 cut(s)	29, 494, 566, 1221, 1594
SmoI	CTYRAG	5 cut(s)	29, 494, 566, 1221, 1594
SseBI	AGGCCT	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	893
SstI	GAGCTC	2 cut(s)	333, 930
StuI	AGGCCT	1 cut(s)	35
StyI	CCWWGG	2 cut(s)	540, 792
TaaI	ACNGT	3 cut(s)	1978, 2168, 2354
TaqII	GACCGA	3 cut(s)	650, 1097, 1280
TatI	WGTACW	3 cut(s)	498, 2043, 2229
TauI	GCSGC	2 cut(s)	609, 659
Tru1I	TTAA	1 cut(s)	1649
Tru9I	TTAA	1 cut(s)	1649
TseI	GCWGC	4 cut(s)	940, 1426, 1501, 2321
TspDTI	ATGAA	4 cut(s)	898, 1245, 1824, 2252
TspGWI	ACGGA	1 cut(s)	2675
Tth111I	GACNNNGTC	1 cut(s)	2166
Van91I	CCANNNNNTGG	4 cut(s)	1609, 1941, 1966, 2149
VpaK11BI	GGWCC	5 cut(s)	75, 242, 1109, 1469, 1757
XagI	CCTNNNNNAGG	1 cut(s)	2723
XapI	RAATTY	3 cut(s)	2157, 2615, 2808
XceI	RCATGY	3 cut(s)	1462, 2236, 2482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2899
XhoI	CTCGAG	2 cut(s)	494, 1594
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	3 cut(s)	956, 1388, 2802
ZraI	GACGTC	2 cut(s)	759, 2557
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.