pycom15g29240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017138
Physical Location & Seq
Reverse (-)
25971110 .. 25974387
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
ATGATTGCAACTGAAAGGCACTATTGCTACGCTAACTCAACTCCTGGCGCCAAACCTTATCCGCTCAAAGTAAACAACAGAGAGAGAGAGAGAGAGGGAGGCATGGCGAGGTGCTGCTTGGACATGGCCGCAAAGGCTGCTTCCGCTTCCAGTTTATTAGTAGCCTCCTCCTCTTCCTCCTCCGACTTTCACCGTCCCCGGCAACTGCGAATCGGAGCTTCTTCCTCTGCTGTTCCTTCTGGTGTCGAGCTCAACACCCTCCAATCCGCCATTGCAAAGAAAGATAGCAGTGCGGTTAAACAGGCACTTGATCAGCTAAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTCTCGCGGCGTACGACATCGCTTAGGGAGCTGACAACTCTTGGGATTAAAAATGCAGAAACTCTTGCAGTTCCCAGTGTCAGAAATGATGCGGCCTTTCTATTCACCGTGGTAGGGACAACGGGATTCTTAGGTCTTCTTGCTGGCCAACTTCCTGGGGATTGGGGGTTTTTCGTACCATACTTGGTCGGGAGCATCTCTTTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCGATATCTGGCTTTTCATCATTTTTCCCAGACTATCAGGAGAGAATTGCTAGGCATGAAGCTGCTCATTTCTTAGTTGCATATTTGCTGGGCCTTCCTATTCTGGGATACTCTCTAGATATTGGGAAAGAGAATGTCAACCTTACTGACGAAAGGCTCGAGAAACTGATATACAGTGGGCAGCTCGATGCAAAGGAACTAGACAGGTTGGCAGTGGTAGCAATGGCTGGACTTGCAGCAGAAGGTCTGAAATATGACAAAGTGATCGGTCAATCTGCTGATCTTTTCACTCTACAGAGATTTATCAACAGAAGCAAGCCGCAGCTCAGCAAAGATCAGCAGCAAAATCTTACTAGATGGGCTGTTTTGTTTGCCGGATCGCTCTTAAAAAATGATAAGGTGATTCATGAGGCCTTAATAACAGCAATGTCAAACAAGGCAACTATCCTGGAATGCATTGAAGCAATTGAGAAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

39.21

Weight (kDa)

8.9

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21960
fragaria_vesca FvH4_1g22260
malus_domestica MD15G1333200.v1.1
prunus_persica Prupe.6G173100_v2.0.a1
pyrus_communis pycom15g29240
rosa_chinensis RchiOBHm_Chr2g0116401
rosa_laevigata RLG00000018266
rosa_multiflora Rmu_sc0004191.1_g000066
rosa_roxburghii Rroxscaffold_2G00127240
rosa_rugosa Rorug02G0206300
rosa_samantha Rh2BG273200 Rh2CG268100
rosa_wichuraiana Rw2G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 1 cut(s) 367
AciI CCGC 8 cut(s) 62, 129, 144, 267, 293, 367, 452, 929
AclWI GGATC 1 cut(s) 994
AcoI YGGCCR 2 cut(s) 126, 505
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 373, 537
AfiI CCNNNNNNNGG 3 cut(s) 342, 474, 713
AgsI TTSAA 2 cut(s) 605, 1070
AjnI CCWGG 4 cut(s) 43, 514, 592, 1056
AluBI AGCT 9 cut(s) 218, 250, 316, 391, 608, 671, 793, 934, 1085
AluI AGCT 9 cut(s) 218, 250, 316, 391, 608, 671, 793, 934, 1085
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 994
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 6 cut(s) 126, 333, 453, 505, 700, 1020
ApeKI GCWGC 9 cut(s) 114, 137, 608, 671, 790, 845, 931, 949, 1085
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 333, 700
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 182, 457, 1021
AvaI CYCGRG 1 cut(s) 767
BalI TGGCCA 1 cut(s) 507
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 9 cut(s) 101, 124, 595, 658, 802, 857, 943, 961, 1072
BccI CCATC 1 cut(s) 960
BciT130I CCWGG 4 cut(s) 45, 516, 594, 1058
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 4 cut(s) 660, 725, 809, 963
BfmI CTRYAG 1 cut(s) 902
BfoI RGCGCY 1 cut(s) 51
BfuI GTATCC 1 cut(s) 710
BglI GCCNNNNNGGC 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 935
Bme1390I CCNGG 5 cut(s) 45, 199, 516, 594, 1058
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 333, 700
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 5 cut(s) 45, 199, 516, 594, 1058
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 3 cut(s) 439, 564, 787
BmuI ACTGGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 197, 468, 515, 592, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 474, 713
Bse1I ACTGG 2 cut(s) 150, 435
Bse3DI GCAATG 3 cut(s) 270, 837, 1041
BseBI CCWGG 4 cut(s) 45, 516, 594, 1058
BseDI CCNNGG 5 cut(s) 197, 468, 515, 592, 593
BseLI CCNNNNNNNGG 3 cut(s) 342, 474, 713
BseMI GCAATG 3 cut(s) 270, 837, 1041
BseMII CTCAG 2 cut(s) 365, 949
BseNI ACTGG 2 cut(s) 150, 435
BseRI GAGGAG 3 cut(s) 157, 160, 169
BseXI GCAGC 9 cut(s) 101, 124, 595, 658, 802, 857, 943, 961, 1072
BseYI CCCAGC 1 cut(s) 697
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 6 cut(s) 128, 335, 455, 507, 702, 1022
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 2 cut(s) 199, 984
BsiWI CGTACG 1 cut(s) 371
BslFI GGGAC 2 cut(s) 180, 490
BslI CCNNNNNNNGG 3 cut(s) 342, 474, 713
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 180, 490
BsmI GAATGC 1 cut(s) 1067
BsnI GGCC 6 cut(s) 128, 335, 455, 507, 702, 1022
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 5 cut(s) 310, 873, 889, 943, 986
Bsp1720I GCTNAGC 1 cut(s) 935
BspACI CCGC 8 cut(s) 62, 129, 144, 267, 293, 367, 452, 929
BspANI GGCC 6 cut(s) 128, 335, 455, 507, 702, 1022
BspCNI CTCAG 2 cut(s) 364, 948
BspFNI CGCG 1 cut(s) 367
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 994
BspT107I GGYRCC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 3 cut(s) 270, 837, 1041
BsrI ACTGG 2 cut(s) 150, 435
BssECI CCNNGG 5 cut(s) 197, 468, 515, 592, 593
BssMI GATC 5 cut(s) 310, 873, 889, 943, 986
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 4 cut(s) 45, 516, 594, 1058
Bst4CI ACNGT 3 cut(s) 194, 469, 785
Bst6I CTCTTC 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 505, 926
BstDEI CTNAG 6 cut(s) 317, 351, 383, 490, 682, 935
BstDSI CCRYGG 1 cut(s) 468
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 5 cut(s) 313, 876, 892, 946, 989
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 5 cut(s) 310, 873, 889, 943, 986
BstMWI GCNNNNNNNGC 6 cut(s) 134, 137, 143, 388, 827, 842
BstNI CCWGG 4 cut(s) 45, 516, 594, 1058
BstSCI CCNGG 5 cut(s) 43, 197, 514, 592, 1056
BstSFI CTRYAG 1 cut(s) 902
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 9 cut(s) 101, 124, 595, 658, 802, 857, 943, 961, 1072
BstV2I GAAGAC 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 515
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 6 cut(s) 128, 335, 455, 507, 702, 1022
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 363
BtsI GCAGTG 3 cut(s) 295, 585, 828
BtsIMutI CAGTG 5 cut(s) 295, 442, 585, 790, 828
Cac8I GCNNGC 2 cut(s) 505, 926
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 333, 700
Csp6I GTAC 2 cut(s) 372, 536
CviAII CATG 4 cut(s) 103, 124, 665, 1016
CviQI GTAC 2 cut(s) 372, 536
DdeI CTNAG 6 cut(s) 317, 351, 383, 490, 682, 935
DinI GGCGCC 1 cut(s) 49
DpnI GATC 5 cut(s) 312, 875, 891, 945, 988
DpnII GATC 5 cut(s) 310, 873, 889, 943, 986
EaeI YGGCCR 2 cut(s) 126, 505
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 1022
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 43, 514, 592, 1056
EcoRV GATATC 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 1067
EcoT38I GRGCYC 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 4 cut(s) 106, 127, 668, 1019
FaqI GGGAC 2 cut(s) 180, 490
FatI CATG 4 cut(s) 102, 123, 664, 1015
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 4 cut(s) 660, 725, 809, 963
GlaI GCGC 1 cut(s) 49
GsaI CCCAGC 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 6 cut(s) 128, 335, 455, 507, 702, 1022
HapII CCGG 2 cut(s) 199, 984
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 106, 127, 668, 1019
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 210, 486, 1012
HpaII CCGG 2 cut(s) 199, 984
HphI GGTGA 3 cut(s) 182, 457, 1021
Hpy166II GTNNAC 2 cut(s) 73, 748
Hpy188I TCNGA 4 cut(s) 184, 215, 443, 858
Hpy188III TCNNGA 5 cut(s) 550, 647, 725, 769, 1016
Hpy8I GTNNAC 2 cut(s) 73, 748
HpyAV CCTTC 3 cut(s) 246, 713, 845
HpyCH4III ACNGT 3 cut(s) 194, 469, 785
HpyCH4V TGCA 8 cut(s) 8, 275, 416, 428, 689, 800, 845, 1065
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 137, 143, 388, 827, 842
HpyF3I CTNAG 6 cut(s) 317, 351, 383, 490, 682, 935
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 106, 127, 668, 1019
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 310, 873, 889, 943, 986
LmnI GCTCC 3 cut(s) 215, 388, 552
Lsp1109I GCAGC 9 cut(s) 101, 124, 595, 658, 802, 857, 943, 961, 1072
LweI GCATC 3 cut(s) 439, 564, 787
MaeI CTAG 4 cut(s) 660, 725, 809, 963
MalI GATC 5 cut(s) 312, 875, 891, 945, 988
MbiI CCGCTC 1 cut(s) 64
MboI GATC 5 cut(s) 310, 873, 889, 943, 986
MboII GAAGA 4 cut(s) 165, 213, 488, 593
MfeI CAATTG 1 cut(s) 1074
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 3 cut(s) 324, 654, 1074
MluNI TGGCCA 1 cut(s) 507
Mly113I GGCGCC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 507
MseI TTAA 4 cut(s) 297, 408, 995, 1025
Msp20I TGGCCA 1 cut(s) 507
MspI CCGG 2 cut(s) 199, 984
MspR9I CCNGG 5 cut(s) 45, 199, 516, 594, 1058
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 1 cut(s) 1067
MvaI CCWGG 4 cut(s) 45, 516, 594, 1058
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 6 cut(s) 134, 137, 143, 388, 827, 842
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 358
NdeII GATC 5 cut(s) 310, 873, 889, 943, 986
NlaIII CATG 4 cut(s) 106, 127, 668, 1019
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 1067
PaeR7I CTCGAG 1 cut(s) 767
PagI TCATGA 1 cut(s) 1015
PasI CCCWGGG 1 cut(s) 593
PceI AGGCCT 1 cut(s) 1022
PcsI WCGNNNNNNNCGW 2 cut(s) 371, 765
PctI GAATGC 1 cut(s) 1067
PfeI GAWTC 3 cut(s) 210, 486, 1012
Pfl23II CGTACG 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 1056
PluTI GGCGCC 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 4 cut(s) 43, 514, 592, 1056
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 4 cut(s) 43, 514, 592, 1056
PspLI CGTACG 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 333, 700
RsaI GTAC 2 cut(s) 373, 537
RsaNI GTAC 2 cut(s) 372, 536
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 297, 408, 995, 1025
Sau3AI GATC 5 cut(s) 310, 873, 889, 943, 986
Sau96I GGNCC 2 cut(s) 333, 700
ScrFI CCNGG 5 cut(s) 45, 199, 516, 594, 1058
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 3 cut(s) 439, 564, 787
SfcI CTRYAG 1 cut(s) 902
SfoI GGCGCC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 767
SlaI CTCGAG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 3 cut(s) 324, 654, 1074
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 8 cut(s) 62, 129, 144, 267, 293, 367, 452, 929
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 4 cut(s) 660, 725, 809, 963
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 43, 197, 514, 592, 1056
TaaI ACNGT 3 cut(s) 194, 469, 785
TaqI TCGA 3 cut(s) 246, 768, 795
TaqII GACCGA 1 cut(s) 866
TasI AATT 3 cut(s) 324, 654, 1074
TauI GCSGC 4 cut(s) 131, 370, 455, 931
TfiI GAWTC 3 cut(s) 210, 486, 1012
Tru1I TTAA 4 cut(s) 297, 408, 995, 1025
Tru9I TTAA 4 cut(s) 297, 408, 995, 1025
TscAI CASTG 5 cut(s) 295, 442, 592, 790, 828
TseI GCWGC 9 cut(s) 114, 137, 608, 671, 790, 845, 931, 949, 1085
TspDTI ATGAA 3 cut(s) 615, 681, 1004
TspRI CASTG 5 cut(s) 295, 442, 592, 790, 828
Van91I CCANNNNNTGG 1 cut(s) 342
XbaI TCTAGA 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 767
XspI CTAG 4 cut(s) 660, 725, 809, 963
Zsp2I ATGCAT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.