Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Forward (+)

26258550 .. 26261131

Gene Structure 2582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGCTGTCTGCAATTACCACGCACTGCCCATCTCTTGTTCGTCTGCCGGCGAACGCCCCTTCAACCTCCTTGCCTCCTACCTCAGTATCTTTTCGGCTTTCGTCGATTAGCCTCAGCCGTAGAAAACCCATTTCAATTCGATCAACTTCAATTTCGGCTGTGCCAAAAACCGAGGGGCTCGCACCTGCAATTTCACTTACAGACAGCGCATTGAAGCACTTCAGTAAGATGAGATCTGAACGCGGCGAAGACTTATGCTTGAGAATTGGTGTTAAACAGGGTGGATGCTCCGGCATGTCTTATACCATGGACTTCGAGAGTAAAGCAAATGCAAGGCCAGATGATTCTATCATTGAATATAATGGCTTGATTATGGTTTGTGATCCAAAGAGCCTCCTGTTCTTGTATGGCATGCAATTAGACTACAGTGATGCTCTTATCGGTGGAGGCTTTTCTTTCAAGAACCCCAATGCTACACAGACATGTGGATGCGGTAAATCTTTTGCCGCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

174

Amino Acids

18.47

Weight (kDa)

8.78

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	65 - 167	1.4e-20	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	246, 495, 510
AclWI	GGATC	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	66, 138, 153, 217, 359, 463
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	7, 212
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	2 cut(s)	247, 510
BlsI	GCNGC	2 cut(s)	248, 511
BmsI	GCATC	3 cut(s)	278, 424, 482
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	174, 309
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	174, 309
BseGI	GGATG	2 cut(s)	293, 497
BseMII	CTCAG	2 cut(s)	99, 130
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	50, 294
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	143, 236, 385
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	246, 495, 510
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	98, 129
BspFNI	CGCG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	174, 309
BssMI	GATC	3 cut(s)	143, 236, 385
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	51, 183, 416
BstDEI	CTNAG	2 cut(s)	85, 116
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	293, 497
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 212
BstKTI	GATC	3 cut(s)	146, 239, 388
BstMBI	GATC	3 cut(s)	143, 236, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	3 cut(s)	301, 418, 489
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	293, 497
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 436
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	3 cut(s)	51, 183, 416
CfoI	GCGC	2 cut(s)	7, 212
Cfr10I	RCCGGY	1 cut(s)	49
CviAII	CATG	4 cut(s)	298, 310, 415, 486
CviJI	RGCY	9 cut(s)	100, 114, 120, 161, 181, 340, 369, 396, 453
CviKI_1	RGCY	9 cut(s)	100, 114, 120, 161, 181, 340, 369, 396, 453
DdeI	CTNAG	2 cut(s)	85, 116
DpnI	GATC	3 cut(s)	145, 238, 387
DpnII	GATC	3 cut(s)	143, 236, 385
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	301, 313, 418, 489
FaiI	YATR	9 cut(s)	259, 299, 306, 311, 363, 377, 411, 416, 487
FatI	CATG	4 cut(s)	297, 309, 414, 485
Fnu4HI	GCNGC	2 cut(s)	247, 510
FokI	GGATG	2 cut(s)	300, 504
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	247, 510
GlaI	GCGC	2 cut(s)	6, 211
GluI	GCNGC	2 cut(s)	247, 510
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	2 cut(s)	50, 294
HhaI	GCGC	2 cut(s)	7, 212
Hin1II	CATG	4 cut(s)	301, 313, 418, 489
Hin6I	GCGC	2 cut(s)	5, 210
HinP1I	GCGC	2 cut(s)	5, 210
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	2 cut(s)	50, 294
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	319, 463
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	4 cut(s)	14, 191, 335, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	85, 116
Hsp92II	CATG	4 cut(s)	301, 313, 418, 489
HspAI	GCGC	2 cut(s)	5, 210
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	143, 236, 385
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	63, 201, 266, 307, 354, 413
LweI	GCATC	3 cut(s)	278, 424, 482
MalI	GATC	3 cut(s)	145, 238, 387
MboI	GATC	3 cut(s)	143, 236, 385
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	6 cut(s)	15, 138, 153, 192, 267, 419
MnlI	CCTC	7 cut(s)	79, 87, 94, 125, 169, 407, 443
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	484, 490
MspI	CCGG	2 cut(s)	50, 294
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	143, 236, 385
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	301, 313, 418, 489
NspI	RCATGY	3 cut(s)	301, 418, 489
PaeI	GCATGC	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	196
PciI	ACATGT	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	248, 511
PscI	ACATGT	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	236
RseI	CAYNNNNRTG	2 cut(s)	484, 490
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	247, 510
Sau3AI	GATC	3 cut(s)	143, 236, 385
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	3 cut(s)	71, 86, 190
SfaNI	GCATC	3 cut(s)	278, 424, 482
SfcI	CTRYAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	484, 490
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	6 cut(s)	15, 138, 153, 192, 267, 419
SsiI	CCGC	3 cut(s)	246, 495, 510
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	107, 142, 318
TasI	AATT	6 cut(s)	15, 138, 153, 192, 267, 419
TauI	GCSGC	2 cut(s)	249, 512
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	32, 436
TspRI	CASTG	2 cut(s)	32, 436
XceI	RCATGY	3 cut(s)	301, 418, 489
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.