Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013596

Physical Location & Seq

Genomic Coordinates Forward (+)

26420274 .. 26420798

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAAAGTTCCCTTTGTCCAAAAAAAAAATTCCTCAGCAGCCAAGCCATGGGAACTCTCTCTAAATTGATCTCCCATCTCTACACCCTCACCATAATCTTCTTCACTCTCCTCATCCTTGAAATCGCAATCCACGTCCGTTCCATCGCCAGACTCAACCTGAATTCAGGCAAACGTGTCATCACCACCACACAGTATCTCAAACTCATAGAGCAAAAGAATCCCACAATTTGCTACACAAAAAAACTGAAGGCCACAGAATGCTCAGTTTGCTTATCAGATTTTGAGGAAGGTGACAAGATTAGGCAGCTGAAATGTAAGCACACATTTCACCAGGGCTGCCTGGACAAGTGGCTGCAAGAGTATAGGGCCACGTGTCCACTTTGCAGGACGAAGGTGTTGCCGGACGATGTTGTGGCTAGTTATCAGCGGCTGAGAAATCAGGTACAATACGACGGCAGCGATGCGGAGTTGATTTTCTTGTTATCTTCGTTGCAGGGGAATACTTTACATAGATTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

175

Amino Acids

20.01

Weight (kDa)

9.39

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	86 - 130	1.3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	87 - 130	6.1e-15	Ring finger domain
zf-RING_11	PF17123	87 - 115	5.8e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	87 - 129	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	87 - 131	2.8e-07	zinc-RING finger domain
zf-C3HC4	PF00097	88 - 129	7.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	88 - 127	2.1e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21810
malus_domestica	MD01G1022200.v1.1 MD15G1330200.v1.1
prunus_persica	Prupe.6G177600_v2.0.a1
pyrus_communis	pycom01g04980 pycom15g29510
rosa_chinensis	RchiOBHm_Chr2g0115671
rosa_laevigata	RLG00000018201
rosa_multiflora	Rmu_co8327781.1_g000001 Rmu_ssc0000197.1_g000069
rosa_roxburghii	Rroxscaffold_2G00127970 Rroxscaffold_2G00128840
rosa_rugosa	Rorug02G0199300
rosa_samantha	Rh2AG256500 Rh2BG267100 Rh2CG262000 Rh2DG264900
rosa_wichuraiana	Rw2G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	2 cut(s)	430, 467
AcsI	RAATTY	2 cut(s)	29, 163
AcuI	CTGAAG	1 cut(s)	269
AcvI	CACGTG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	2 cut(s)	175, 374
AgsI	TTSAA	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	333, 342
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	252, 369
ApeKI	GCWGC	5 cut(s)	39, 307, 339, 355, 459
ApoI	RAATTY	2 cut(s)	29, 163
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	4 cut(s)	82, 175, 305, 323
BbrPI	CACGTG	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	51, 319, 326, 342, 471
BccI	CCATC	2 cut(s)	84, 152
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	2 cut(s)	335, 344
BfaI	CTAG	1 cut(s)	420
BisI	GCNGC	6 cut(s)	40, 308, 340, 356, 431, 460
BlsI	GCNGC	6 cut(s)	41, 309, 341, 357, 432, 461
Bme1390I	CCNGG	2 cut(s)	335, 344
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	335, 344
BmsI	GCATC	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	48, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	335, 344
BseDI	CCNNGG	2 cut(s)	48, 334
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	49, 279, 425
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	5 cut(s)	51, 319, 326, 342, 471
BshFI	GGCC	2 cut(s)	254, 371
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	254, 371
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	2 cut(s)	430, 467
BspANI	GGCC	2 cut(s)	254, 371
BspCNI	CTCAG	3 cut(s)	48, 278, 426
BssECI	CCNNGG	2 cut(s)	48, 334
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	335, 344
Bst4CI	ACNGT	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	35, 265, 434
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	2 cut(s)	335, 344
BstSCI	CCNGG	2 cut(s)	333, 342
BstV1I	GCAGC	5 cut(s)	51, 319, 326, 342, 471
BsuRI	GGCC	2 cut(s)	254, 371
BtgI	CCRYGG	1 cut(s)	48
BtgZI	GCGATG	2 cut(s)	130, 477
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	9 cut(s)	42, 47, 254, 310, 339, 355, 371, 419, 433
CviKI_1	RGCY	9 cut(s)	42, 47, 254, 310, 339, 355, 371, 419, 433
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	35, 265, 434
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	333, 342
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 95, 209, 366, 513
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	6 cut(s)	40, 308, 340, 356, 431, 460
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	6 cut(s)	40, 308, 340, 356, 431, 460
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	6 cut(s)	40, 308, 340, 356, 431, 460
HaeIII	GGCC	2 cut(s)	254, 371
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	2 cut(s)	153, 220
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	82, 175, 305, 323
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	3 cut(s)	244, 284, 388
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	3 cut(s)	135, 175, 374
HpyCH4V	TGCA	3 cut(s)	358, 387, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	35, 265, 434
HpySE526I	ACGT	3 cut(s)	135, 175, 374
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	69
Lsp1109I	GCAGC	5 cut(s)	51, 319, 326, 342, 471
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	135, 175, 374
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	91, 94, 480
MluCI	AATT	4 cut(s)	29, 65, 163, 228
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	44, 98, 122, 280
MspA1I	CMGCKG	2 cut(s)	310, 430
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	335, 344
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	2 cut(s)	335, 344
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 459
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	41, 309, 341, 357, 432, 461
PleI	GAGTC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	375
PmlI	CACGTG	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	333, 342
PspCI	CACGTG	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	333, 342
PspPI	GGNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	6 cut(s)	40, 308, 340, 356, 431, 460
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	335, 344
SetI	ASST	8 cut(s)	138, 162, 178, 295, 312, 377, 399, 447
SfaNI	GCATC	1 cut(s)	454
Sse9I	AATT	4 cut(s)	29, 65, 163, 228
SsiI	CCGC	2 cut(s)	430, 467
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	333, 342
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	3 cut(s)	138, 178, 377
TasI	AATT	4 cut(s)	29, 65, 163, 228
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	5 cut(s)	39, 307, 339, 355, 459
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	49
XapI	RAATTY	2 cut(s)	29, 163
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.