pycom15g30390

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006176
Physical Location & Seq
Forward (+)
27828042 .. 27831197
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGGATGCCAAGGACATCTTGGGCTTGCCCAAATCCACGCATCCCGCATCCCAGGAGAAGAAATCTCGGCCGTTGAAGGAATCTCAGCGAAAACCAGATGGCATTTCGCGCGAGGTGTATGCGCTTACCGGTGGTGTTCCACCTCTCATGCCGGCAGTGGAGCCATTACAGCTGAAAAAAAGGCCTCCGACTGATGAAAACATCACTTGGCAGTGGCTTCCTTTTACTAGTTCTGCCCGGAAAGATAATTTACAGCTCTACCACTGGGTTATAGTTGTAAATGGCATCCCGCCTACAGGTGACTACTCCTTTGCCAAGTATAACAAGTCTGTGGACGTTGTCAAGTACACAGACGAGGAGTATGAGAAGCATTTGACTGATGATATGTGGACAAAGGAGGAGACAGATCAATTGTTTGAATTATGTCAACAGTTTGATCTACGCTTCATTGTGATAGCAGACAGGTTCTCGTCTTCTCGTACTGTGGAAGAACTGAAGGAACGCTATTACAAAGTATCTCGATCTATATTAATTGCTAGAGCGGCGGCATTTCCTGGAAATGTTTCAGAGCATCCTATTGTTAAGGAACCTTACAAATTTACACAAGAGAGAGATCGCAAGCGAGCATTGTCCATGGTTCTCTCTCAAACAAAGCACCAAGAGAGAAAAGATTATGAGGTTCTGGCAGAAGCCAAAAGAATAGCTGAGTCACACATGGCTGCAAGGGTAAGTTTACCAATTAATGCTAAAGAGTCAGAGTTGCTTGTCACATTTACTATGGATAGTGAGAGGGCTATTGTTTTTGGTGAGACTCTATCACCTCCATCTAACTCTGAGTTCGCCCCTGCAATGGTTGCACATTCAACTTCAATGGCAGAGAATGCCTCTACTCTAGTTTCTCTCCGCATGCTTCGGGTGTATCTTAGAACATATGCACTTGACCAAATGATCCATAGCTGCAAGCTCATCTGCTGGACTTCGGACTATCAAGCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

333

Amino Acids

38.0

Weight (kDa)

7.1

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANT_DAMP1_like PF16282 102 - 176 1.2e-31 SANT/Myb-like domain of DAMP1
Myb_DNA-binding PF00249 129 - 171 3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 542
AccII CGCG 2 cut(s) 109, 111
AciI CCGC 6 cut(s) 45, 290, 542, 545, 904, 992
AclWI GGATC 1 cut(s) 943
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 2 cut(s) 347, 481
AfiI CCNNNNNNNGG 2 cut(s) 296, 850
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 4 cut(s) 76, 419, 864, 870
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 2 cut(s) 51, 553
AluBI AGCT 5 cut(s) 172, 256, 704, 957, 964
AluI AGCT 5 cut(s) 172, 256, 704, 957, 964
Alw26I GTCTC 2 cut(s) 395, 803
AlwI GGATC 1 cut(s) 943
AoxI GGCC 2 cut(s) 68, 182
ApeKI GCWGC 2 cut(s) 719, 957
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AseI ATTAAT 2 cut(s) 530, 741
AsiGI ACCGGT 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 2 cut(s) 111, 124
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 3 cut(s) 311, 810, 818
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 706, 944
BccI CCATC 2 cut(s) 92, 832
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 2 cut(s) 53, 555
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 395, 803
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 3 cut(s) 228, 537, 893
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 4 cut(s) 543, 546, 720, 958
BlsI GCNGC 4 cut(s) 544, 547, 721, 959
Bme1390I CCNGG 3 cut(s) 53, 238, 555
BmiI GGNNCC 2 cut(s) 162, 588
BmrFI CCNGG 3 cut(s) 53, 238, 555
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 4 cut(s) 49, 56, 294, 580
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 869, 901
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 9, 51, 633
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 850
Bse118I RCCGGY 2 cut(s) 128, 151
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 53, 555
BseDI CCNNGG 3 cut(s) 9, 51, 633
BseGI GGATG 5 cut(s) 10, 40, 47, 285, 571
BseLI CCNNNNNNNGG 2 cut(s) 296, 850
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 98, 696, 825
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 371, 413
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 706, 944
Bsh1236I CGCG 2 cut(s) 109, 111
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 70, 184
BshTI ACCGGT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 3 cut(s) 129, 152, 238
BslI CCNNNNNNNGG 2 cut(s) 296, 850
BsmAI GTCTC 2 cut(s) 395, 803
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 2 cut(s) 70, 184
Bsp143I GATC 5 cut(s) 406, 436, 521, 613, 948
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 6 cut(s) 45, 290, 542, 545, 904, 992
BspANI GGCC 2 cut(s) 70, 184
BspCNI CTCAG 3 cut(s) 97, 697, 826
BspFNI CGCG 2 cut(s) 109, 111
BspLI GGNNCC 2 cut(s) 162, 588
BspPI GGATC 1 cut(s) 943
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 2 cut(s) 128, 151
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 2 cut(s) 128, 151
BssECI CCNNGG 3 cut(s) 9, 51, 633
BssMI GATC 5 cut(s) 406, 436, 521, 613, 948
BssT1I CCWWGG 2 cut(s) 9, 633
Bst2UI CCWGG 2 cut(s) 53, 555
Bst4CI ACNGT 2 cut(s) 432, 484
BstAPI GCANNNNNTGC 2 cut(s) 854, 881
BstC8I GCNNGC 6 cut(s) 26, 153, 620, 624, 908, 962
BstDEI CTNAG 4 cut(s) 84, 705, 834, 923
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 5 cut(s) 10, 40, 47, 285, 571
BstFNI CGCG 2 cut(s) 109, 111
BstHHI GCGC 2 cut(s) 111, 124
BstKTI GATC 5 cut(s) 409, 439, 524, 616, 951
BstMAI GTCTC 2 cut(s) 395, 803
BstMBI GATC 5 cut(s) 406, 436, 521, 613, 948
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 108, 169, 542, 854, 881
BstNI CCWGG 2 cut(s) 53, 555
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 3 cut(s) 51, 236, 553
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 2 cut(s) 109, 111
BstV1I GCAGC 2 cut(s) 706, 944
BstV2I GAAGAC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 70, 184
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 5 cut(s) 10, 40, 47, 285, 571
BtsI GCAGTG 2 cut(s) 162, 218
BtsIMutI CAGTG 3 cut(s) 162, 218, 262
Cac8I GCNNGC 6 cut(s) 26, 153, 620, 624, 908, 962
CfoI GCGC 2 cut(s) 111, 124
Cfr10I RCCGGY 2 cut(s) 128, 151
Csp6I GTAC 2 cut(s) 346, 480
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 4 cut(s) 148, 634, 715, 907
CviQI GTAC 2 cut(s) 346, 480
DdeI CTNAG 4 cut(s) 84, 705, 834, 923
DpnI GATC 5 cut(s) 408, 438, 523, 615, 950
DpnII GATC 5 cut(s) 406, 436, 521, 613, 948
EaeI YGGCCR 1 cut(s) 68
EagI CGGCCG 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 9, 633
Eco147I AGGCCT 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 51, 553
EcoT14I CCWWGG 2 cut(s) 9, 633
ErhI CCWWGG 2 cut(s) 9, 633
FaeI CATG 4 cut(s) 151, 637, 718, 910
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 4 cut(s) 147, 633, 714, 906
FauI CCCGC 3 cut(s) 52, 297, 985
FauNDI CATATG 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 543, 546, 720, 958
FokI GGATG 5 cut(s) 17, 27, 34, 272, 558
Fsp4HI GCNGC 4 cut(s) 543, 546, 720, 958
FspBI CTAG 3 cut(s) 228, 537, 893
GlaI GCGC 2 cut(s) 110, 123
GluI GCNGC 4 cut(s) 543, 546, 720, 958
HaeIII GGCC 2 cut(s) 70, 184
HapII CCGG 3 cut(s) 129, 152, 238
HhaI GCGC 2 cut(s) 111, 124
Hin1II CATG 4 cut(s) 151, 637, 718, 910
Hin6I GCGC 2 cut(s) 109, 122
HinP1I GCGC 2 cut(s) 109, 122
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HinfI GANTC 4 cut(s) 80, 707, 752, 811
HpaII CCGG 3 cut(s) 129, 152, 238
HphI GGTGA 3 cut(s) 311, 810, 818
Hpy166II GTNNAC 5 cut(s) 334, 348, 390, 428, 734
Hpy188I TCNGA 5 cut(s) 189, 568, 757, 835, 982
Hpy188III TCNNGA 1 cut(s) 519
Hpy8I GTNNAC 5 cut(s) 334, 348, 390, 428, 734
HpyAV CCTTC 2 cut(s) 70, 490
HpyCH4III ACNGT 2 cut(s) 432, 484
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 722, 848, 857, 935, 960
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 169, 542, 854, 881
HpyF3I CTNAG 4 cut(s) 84, 705, 834, 923
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 151, 637, 718, 910
HspAI GCGC 2 cut(s) 109, 122
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 5 cut(s) 406, 436, 521, 613, 948
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 2 cut(s) 706, 944
LweI GCATC 4 cut(s) 49, 56, 294, 580
MaeI CTAG 3 cut(s) 228, 537, 893
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 299, 708, 766
MalI GATC 5 cut(s) 408, 438, 523, 615, 950
MbiI CCGCTC 1 cut(s) 542
MboI GATC 5 cut(s) 406, 436, 521, 613, 948
MboII GAAGA 3 cut(s) 70, 465, 500
MfeI CAATTG 1 cut(s) 410
MluCI AATT 6 cut(s) 247, 410, 419, 531, 596, 738
MlyI GAGTC 3 cut(s) 716, 761, 805
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 9 cut(s) 106, 153, 195, 349, 391, 670, 783, 831, 895
MroNI GCCGGC 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 3 cut(s) 530, 582, 741
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 129, 152, 238
MspR9I CCNGG 3 cut(s) 53, 238, 555
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 2 cut(s) 53, 555
MvnI CGCG 2 cut(s) 109, 111
MwoI GCNNNNNNNGC 5 cut(s) 108, 169, 542, 854, 881
NaeI GCCGGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 633
NdeI CATATG 1 cut(s) 931
NdeII GATC 5 cut(s) 406, 436, 521, 613, 948
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 4 cut(s) 151, 637, 718, 910
NlaIV GGNNCC 2 cut(s) 162, 588
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 299, 708, 766
NspI RCATGY 1 cut(s) 910
PaeI GCATGC 1 cut(s) 910
PceI AGGCCT 1 cut(s) 184
PctI GAATGC 1 cut(s) 886
PdiI GCCGGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 4 cut(s) 544, 547, 721, 959
PleI GAGTC 3 cut(s) 715, 760, 805
PpsI GAGTC 3 cut(s) 715, 760, 805
PshBI ATTAAT 2 cut(s) 530, 741
Psp6I CCWGG 2 cut(s) 51, 553
PspGI CCWGG 2 cut(s) 51, 553
PspN4I GGNNCC 2 cut(s) 162, 588
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 2 cut(s) 347, 481
RsaNI GTAC 2 cut(s) 346, 480
SaqAI TTAA 3 cut(s) 530, 582, 741
SatI GCNGC 4 cut(s) 543, 546, 720, 958
Sau3AI GATC 5 cut(s) 406, 436, 521, 613, 948
SchI GAGTC 3 cut(s) 716, 761, 805
ScrFI CCNGG 3 cut(s) 53, 238, 555
SfaNI GCATC 4 cut(s) 49, 56, 294, 580
SfcI CTRYAG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 227
SphI GCATGC 1 cut(s) 910
Sse9I AATT 6 cut(s) 247, 410, 419, 531, 596, 738
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 6 cut(s) 45, 290, 542, 545, 904, 992
SspMI CTAG 3 cut(s) 228, 537, 893
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 3 cut(s) 51, 236, 553
StyI CCWWGG 2 cut(s) 9, 633
TaaI ACNGT 2 cut(s) 432, 484
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 520
TasI AATT 6 cut(s) 247, 410, 419, 531, 596, 738
TatI WGTACW 1 cut(s) 345
TauI GCSGC 2 cut(s) 545, 548
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 3 cut(s) 530, 582, 741
Tru9I TTAA 3 cut(s) 530, 582, 741
TscAI CASTG 3 cut(s) 162, 218, 269
TseFI GTSAC 3 cut(s) 299, 708, 766
TseI GCWGC 2 cut(s) 719, 957
Tsp45I GTSAC 3 cut(s) 299, 708, 766
TspDTI ATGAA 2 cut(s) 210, 436
TspRI CASTG 3 cut(s) 162, 218, 269
Tth111I GACNNNGTC 1 cut(s) 338
VspI ATTAAT 2 cut(s) 530, 741
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 3 cut(s) 228, 537, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.