Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006176

Physical Location & Seq

Genomic Coordinates Forward (+)

27831842 .. 27832643

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTACTGAATCTTCAGAAACAGTTACAACATAAGGAGGCAGAAGGCTCATCTTATCGTGATGGTCCGTACGAAACACCAGGCACACCCAAGGATCGCACTTTTGTTCCTGATTCAACAAGTTTCGGAGGTGAAGTATTAGGGGATAGAGTCGGTAAACGAGACCAAAAACGAAAAGCCCTTGGTAGGGCAGAAGCTCCATCATTGCCTGCGCAGTCTAAAAGGCCTAGAAAGTTAAGGGCATCGGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DMAP1 SANT_DAMP1_like

Protein Analysis

85

Amino Acids

9.32

Weight (kDa)

9.99

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47210 AT2G47210 AT2G47210
fragaria_vesca	FvH4_1g26770 FvH4_1g26770 FvH4_1g26770 FvH4_1g26770 FvH4_1g26770
malus_domestica	MD01G1004200.v1.1 MD15G1342700.v1.1
prunus_persica	Prupe.3G006800_v2.0.a1 Prupe.3G006800_v2.0.a1
pyrus_communis	pycom01g02120 pycom01g02130 pycom15g30390 pycom15g30400
rosa_chinensis	RchiOBHm_Chr3g0486991
rosa_laevigata	RLG00000023041
rosa_multiflora	Rmu_co8166188.1_g000001 Rmu_sc0009825.1_g000003
rosa_roxburghii	Rroxscaffold_6G00395270
rosa_rugosa	Rorug03G0229000
rosa_samantha	Rh3AG278400 Rh3BG314300 Rh3CG312700 Rh3DG309100
rosa_wichuraiana	Rw0G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	186, 187
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	65
BccI	CCATC	2 cut(s)	56, 208
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	90, 181
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 187
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	90, 181
BseLI	CCNNNNNNNGG	2 cut(s)	186, 187
BseMI	GCAATG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	226
BsiWI	CGTACG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	186, 187
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	94, 247
BspANI	GGCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	90, 181
BssMI	GATC	2 cut(s)	94, 247
BssT1I	CCWWGG	2 cut(s)	90, 181
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	97, 250
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	94, 247
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	4 cut(s)	48, 179, 197, 226
CviKI_1	RGCY	4 cut(s)	48, 179, 197, 226
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	2 cut(s)	96, 249
DpnII	GATC	2 cut(s)	94, 247
Eco130I	CCWWGG	2 cut(s)	90, 181
Eco147I	AGGCCT	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	90, 181
ErhI	CCWWGG	2 cut(s)	90, 181
FaiI	YATR	1 cut(s)	33
FspBI	CTAG	1 cut(s)	228
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	3 cut(s)	10, 113, 150
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	3 cut(s)	18, 128, 247
Hpy188III	TCNNGA	2 cut(s)	59, 110
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	24
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	94, 247
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	66, 93, 123, 222
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	2 cut(s)	96, 249
MboI	GATC	2 cut(s)	94, 247
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	2 cut(s)	31, 122
MseI	TTAA	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	94, 247
NsbI	TGCGCA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	10, 113
Pfl23II	CGTACG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspLI	CGTACG	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	94, 247
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	2 cut(s)	133, 199
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	2 cut(s)	90, 181
TaaI	ACNGT	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	10, 113
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	65
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.