pycom15g31910

Oxysterol-binding protein-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
30659945 .. 30664410
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1608 bp
ATGCATCCCTTCTGCTGCATCTCCACGCTCTCCGATCACTCACCAGACCTCCACATGACCTCCTTCGGCTCCAGATCCGACACCCACACCCGCATCGCCAAAATCGACCCGAACAGCGTCAACAATCACAGCTACAGCCACAGCCATTGCAGCGCTGACTACGGACGCCTCAGTCAGCGCACCACGGCGGCTGCTGCTGCTGCCGCCGTGGCAGTCGTGGCTCGGCCACCCTCGGCAAGGGAGCAGCCGGTCGACGTCCAGATAAACGACATCGTCGGGAATGGCGTGTCCGGAATTCTGTACAAGTGGGTGAATTACGGCAAGGGGTGGCGGCCGAGGTGGTTCGTTCTGCAAGACGGAGTTTTGTCGTATTATAAGATTCACGGCCCTGATAGGATCGTCGTTACGGTTGAGACTGAGAAAGGATCAAAAGTCATCGGCGACGAATCGATGCGGCGGATTTCGAGGCATAAGAACGGCATTCCTCACCAGCTCCGCCGCAAGCCTTTCGGCGAAGTCCATCTCAAGGTTTCGAGCGTCCGCGAAAGCAGATCGGATGATAAGAGGTTTTCGATCTTCACAGGCACAAAGAGGTTGCATTTGAGGGCAGAGACTCGAGAAGATCGACACGAATGGGTGGAAGCGTTGCAGGCTGTGAAAGACATGTTCCCGCGGATCTCCAACAGCGAGTTGATGGCTCCGGTCGACAATGTCGCCCTTTCAACTGACAAGGTGAGGCAGCGGCTTGTGGAAGAAGGTGTTAGGGAGGCAGCCATTCAGGACACGGAGCAGATAATGAGGACTGAGTTCGCCGCGTTGCAGAACCACCTCTTGCTGCTCAAGCAGAAGCAGTGGCTCCTTATTGACACGCTGCGACAGTTAGAGACAGAAAAGGTAGATTTGGAGAATACAGTGGTAGATGAGAGCCGACAGTTGAAAGATTCCGGGGATTCTTCTAGATCAAGGCAAGACAAATTCAGTGAAGGGAGTGCAAGTGAATCGGATGAGGATAATGAAAGAGTTGATGCTGCAGAGGAAGAAACAGATGAAGAGGACAATGCTTTCTTTGATACTCGTGATTTTCTATCATCAAGTTCTTTTAAAAGTAATGGGTCCGAGTATCGGATATCATCTGTGTCTTCAGACGATGAAGGGATAAATGCCATTGAACCAGAAGATGGTCTTGATCCATCTATGGGATCTGTTGGAACTAACTTTCCTCTTGTCAAGCGCCGTAATAAGTTGCCGGACCCTGTTGAAAAAGAGAAGAGTGTTAGTCTTTGGTCAATGATTAAGGATAACATTGGGAAGGATCTCACAAAAATATGTCTTCCTGTTTACTTTAATGAGCCTCTATCTACTCTACAAAAGGGTTTTGAGGATTTGGAATACTCGTATCTCCTCGATCGAGCATATGAATGGGGTAAAAGGGGTAATAGCCTTATGAGGATACTTTATGTGGCTGCTTTTGCTGTGTCTGGATATGCATCAACTGAAGGAAGAATTTGCAAGCCATTCAACCCATTATTAGGGGAAACATACGAGGCTGACTATCCAGACAAAGGCCTCCGATTCTTCTCAGAGAAGGTGTTAGTCATCACCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

60.45

Weight (kDa)

5.65

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 97 - 219 1.1e-12 PH domain
PH_11 PF15413 101 - 217 2e-14 Pleckstrin homology domain
Oxysterol_BP PF01237 426 - 530 5.7e-42 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AasI GACNNNNNNGTC 1 cut(s) 171
AatII GACGTC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 1178
AccI GTMKAC 2 cut(s) 252, 705
AccII CGCG 3 cut(s) 543, 673, 815
AccIII TCCGGA 1 cut(s) 290
AclWI GGATC 7 cut(s) 69, 404, 433, 683, 1181, 1207, 1320
AcoI YGGCCR 2 cut(s) 224, 332
AcsI RAATTY 3 cut(s) 294, 974, 1503
AcuI CTGAAG 2 cut(s) 1125, 1515
AcyI GRCGYC 2 cut(s) 166, 255
AfaI GTAC 1 cut(s) 302
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 7 cut(s) 237, 526, 1122, 1178, 1196, 1529, 1562
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 5 cut(s) 723, 937, 1169, 1259, 1519
AloI GAACNNNNNNTCC 2 cut(s) 1201, 1233
AluBI AGCT 2 cut(s) 132, 493
AluI AGCT 2 cut(s) 132, 493
Alw26I GTCTC 3 cut(s) 407, 605, 878
AlwI GGATC 7 cut(s) 69, 404, 433, 683, 1181, 1207, 1320
Ama87I CYCGRG 1 cut(s) 615
Aor13HI TCCGGA 1 cut(s) 290
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 4 cut(s) 224, 332, 385, 1564
ApoI RAATTY 3 cut(s) 294, 974, 1503
AspLEI GCGC 3 cut(s) 155, 180, 1233
AspS9I GGNCC 3 cut(s) 386, 1113, 1249
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 5 cut(s) 33, 322, 479, 745, 1591
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 2 cut(s) 1113, 1249
BauI CACGAG 1 cut(s) 1074
BbsI GAAGAC 2 cut(s) 1131, 1322
BccI CCATC 4 cut(s) 528, 688, 1172, 1198
BceAI ACGGC 6 cut(s) 191, 201, 334, 400, 493, 1218
BcgI CGANNNNNNTGC 4 cut(s) 490, 524, 981, 1015
BciVI GTATCC 1 cut(s) 1443
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 3 cut(s) 407, 605, 878
BfaI CTAG 1 cut(s) 957
BfmI CTRYAG 2 cut(s) 133, 1029
BfoI RGCGCY 2 cut(s) 156, 1234
BfuI GTATCC 1 cut(s) 1443
BglI GCCNNNNNGGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 946
Bme18I GGWCC 2 cut(s) 1113, 1249
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 3 cut(s) 386, 1113, 1249
BmiI GGNNCC 5 cut(s) 70, 699, 857, 1114, 1251
BmrFI CCNGG 1 cut(s) 946
BmsI GCATC 6 cut(s) 13, 27, 102, 441, 1015, 1496
BpiI GAAGAC 2 cut(s) 1131, 1322
BpmI CTGGAG 1 cut(s) 55
BpuEI CTTGAG 2 cut(s) 509, 824
BpuMI CCSGG 1 cut(s) 946
Bsa29I ATCGAT 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 1486
BsaHI GRCGYC 2 cut(s) 166, 255
BsaJI CCNNGG 6 cut(s) 183, 207, 231, 335, 671, 945
BsaWI WCCGGW 2 cut(s) 290, 700
BsaXI ACNNNNNCTCC 6 cut(s) 33, 44, 63, 74, 979, 1009
Bsc4I CCNNNNNNNGG 7 cut(s) 237, 526, 1122, 1178, 1196, 1529, 1562
Bse118I RCCGGY 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 1486
BseAI TCCGGA 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 449
BseDI CCNNGG 6 cut(s) 183, 207, 231, 335, 671, 945
BseGI GGATG 3 cut(s) 4, 562, 1009
BseJI GATNNNNATC 1 cut(s) 1486
BseLI CCNNNNNNNGG 7 cut(s) 237, 526, 1122, 1178, 1196, 1529, 1562
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 4 cut(s) 184, 408, 795, 1593
BseRI GAGGAG 1 cut(s) 1391
BseX3I CGGCCG 1 cut(s) 332
Bsh1236I CGCG 3 cut(s) 543, 673, 815
Bsh1285I CGRYCG 4 cut(s) 252, 335, 705, 1408
BshFI GGCC 4 cut(s) 226, 334, 387, 1566
BshVI ATCGAT 1 cut(s) 449
BsiEI CGRYCG 4 cut(s) 252, 335, 705, 1408
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 5 cut(s) 248, 291, 701, 945, 1247
BslI CCNNNNNNNGG 7 cut(s) 237, 526, 1122, 1178, 1196, 1529, 1562
BsmAI GTCTC 3 cut(s) 407, 605, 878
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 4 cut(s) 226, 334, 387, 1566
BsoBI CYCGRG 1 cut(s) 615
Bsp13I TCCGGA 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 300
BspANI GGCC 4 cut(s) 226, 334, 387, 1566
BspCNI CTCAG 4 cut(s) 183, 409, 796, 1592
BspDI ATCGAT 1 cut(s) 449
BspEI TCCGGA 1 cut(s) 290
BspFNI CGCG 3 cut(s) 543, 673, 815
BspLI GGNNCC 5 cut(s) 70, 699, 857, 1114, 1251
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 7 cut(s) 69, 404, 433, 683, 1181, 1207, 1320
BsrDI GCAATG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 6 cut(s) 183, 207, 231, 335, 671, 945
BssNI GRCGYC 2 cut(s) 166, 255
BssSI CACGAG 1 cut(s) 1074
Bst2BI CACGAG 1 cut(s) 1074
Bst4CI ACNGT 4 cut(s) 409, 879, 913, 933
Bst6I CTCTTC 2 cut(s) 1044, 1262
BstACI GRCGYC 2 cut(s) 166, 255
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 503, 651, 1511
BstDEI CTNAG 4 cut(s) 170, 417, 804, 1579
BstDSI CCRYGG 3 cut(s) 183, 207, 671
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 4, 562, 1009
BstFNI CGCG 3 cut(s) 543, 673, 815
BstH2I RGCGCY 2 cut(s) 156, 1234
BstHHI GCGC 3 cut(s) 155, 180, 1233
BstMAI GTCTC 3 cut(s) 407, 605, 878
BstMCI CGRYCG 4 cut(s) 252, 335, 705, 1408
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 944
BstSFI CTRYAG 2 cut(s) 133, 1029
BstUI CGCG 3 cut(s) 543, 673, 815
BstV2I GAAGAC 2 cut(s) 1131, 1322
BstX2I RGATCY 4 cut(s) 74, 675, 1199, 1312
BstYI RGATCY 4 cut(s) 74, 675, 1199, 1312
BstZI CGGCCG 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 449
BsuI GTATCC 1 cut(s) 1443
BsuRI GGCC 4 cut(s) 226, 334, 387, 1566
BsuTUI ATCGAT 1 cut(s) 449
BtgI CCRYGG 3 cut(s) 183, 207, 671
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 3 cut(s) 4, 562, 1009
BtsI GCAGTG 1 cut(s) 857
BtsIMutI CAGTG 3 cut(s) 857, 918, 985
Cac8I GCNNGC 3 cut(s) 503, 651, 1511
CfoI GCGC 3 cut(s) 155, 180, 1233
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 386, 1113, 1249
Cfr42I CCGCGG 1 cut(s) 674
ClaI ATCGAT 1 cut(s) 449
CseI GACGC 3 cut(s) 106, 174, 526
Csp6I GTAC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 3 cut(s) 55, 664, 1605
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 4 cut(s) 170, 417, 804, 1579
DraI TTTAAA 1 cut(s) 1102
DrdI GACNNNNNNGTC 1 cut(s) 171
DseDI GACNNNNNNGTC 1 cut(s) 171
EaeI YGGCCR 2 cut(s) 224, 332
EagI CGGCCG 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 1044, 1262
EarI CTCTTC 2 cut(s) 1044, 1262
EciI GGCGGA 2 cut(s) 472, 485
EclXI CGGCCG 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 1566
Eco32I GATATC 1 cut(s) 1128
Eco47I GGWCC 2 cut(s) 1113, 1249
Eco47III AGCGCT 1 cut(s) 154
Eco52I CGGCCG 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 1125, 1515
Eco88I CYCGRG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 294
EcoRV GATATC 1 cut(s) 1128
EcoT22I ATGCAT 2 cut(s) 6, 1489
FaeI CATG 3 cut(s) 58, 667, 1608
FalI AAGNNNNNCTT 2 cut(s) 1167, 1199
FatI CATG 3 cut(s) 54, 663, 1604
FauI CCCGC 2 cut(s) 98, 678
FauNDI CATATG 1 cut(s) 1414
FblI GTMKAC 2 cut(s) 252, 705
FokI GGATG 2 cut(s) 569, 1016
FspBI CTAG 1 cut(s) 957
GlaI GCGC 3 cut(s) 154, 179, 1232
GsuI CTGGAG 1 cut(s) 55
HaeII RGCGCY 2 cut(s) 156, 1234
HaeIII GGCC 4 cut(s) 226, 334, 387, 1566
HapII CCGG 5 cut(s) 248, 291, 701, 945, 1247
HgaI GACGC 3 cut(s) 106, 174, 526
HhaI GCGC 3 cut(s) 155, 180, 1233
Hin1I GRCGYC 2 cut(s) 166, 255
Hin1II CATG 3 cut(s) 58, 667, 1608
Hin6I GCGC 3 cut(s) 153, 178, 1231
HinP1I GCGC 3 cut(s) 153, 178, 1231
HincII GTYRAC 3 cut(s) 121, 253, 706
HindII GTYRAC 3 cut(s) 121, 253, 706
HinfI GANTC 7 cut(s) 379, 446, 613, 941, 950, 998, 1572
HpaII CCGG 5 cut(s) 248, 291, 701, 945, 1247
HphI GGTGA 5 cut(s) 33, 322, 479, 745, 1591
Hpy166II GTNNAC 4 cut(s) 121, 253, 706, 1339
Hpy188I TCNGA 9 cut(s) 34, 79, 556, 1003, 1117, 1125, 1144, 1571, 1582
Hpy8I GTNNAC 4 cut(s) 121, 253, 706, 1339
Hpy99I CGWCG 4 cut(s) 257, 278, 404, 446
HpyAV CCTTC 8 cut(s) 19, 73, 749, 977, 1145, 1303, 1490, 1579
HpyCH4III ACNGT 4 cut(s) 409, 879, 913, 933
HpyCH4IV ACGT 1 cut(s) 255
HpyF3I CTNAG 4 cut(s) 170, 417, 804, 1579
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 166, 255
Hsp92II CATG 3 cut(s) 58, 667, 1608
HspAI GCGC 3 cut(s) 153, 178, 1231
Kpn2I TCCGGA 1 cut(s) 290
KspI CCGCGG 1 cut(s) 674
LmnI GCTCC 6 cut(s) 74, 241, 498, 703, 787, 861
LweI GCATC 6 cut(s) 13, 27, 102, 441, 1015, 1496
MaeI CTAG 1 cut(s) 957
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 403
MflI RGATCY 4 cut(s) 74, 675, 1199, 1312
MluCI AATT 4 cut(s) 294, 313, 974, 1503
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 3 cut(s) 102, 705, 1186
Mph1103I ATGCAT 2 cut(s) 6, 1489
MroI TCCGGA 1 cut(s) 290
MseI TTAA 3 cut(s) 1101, 1293, 1344
MslI CAYNNNNRTG 1 cut(s) 1417
MspA1I CMGCKG 2 cut(s) 673, 742
MspI CCGG 5 cut(s) 248, 291, 701, 945, 1247
MspR9I CCNGG 1 cut(s) 946
Mva1269I GAATGC 1 cut(s) 480
MvnI CGCG 3 cut(s) 543, 673, 815
NciI CCSGG 1 cut(s) 946
NdeI CATATG 1 cut(s) 1414
NlaIII CATG 3 cut(s) 58, 667, 1608
NlaIV GGNNCC 5 cut(s) 70, 699, 857, 1114, 1251
NmeAIII GCCGAG 3 cut(s) 202, 212, 360
NsiI ATGCAT 2 cut(s) 6, 1489
NspI RCATGY 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 615
PceI AGGCCT 1 cut(s) 1566
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 282, 622
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 6 cut(s) 379, 446, 941, 950, 998, 1572
PflFI GACNNNGTC 2 cut(s) 272, 710
PflMI CCANNNNNTGG 1 cut(s) 1178
Ple19I CGATCG 1 cut(s) 1408
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PscI ACATGT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 375
PspN4I GGNNCC 5 cut(s) 70, 699, 857, 1114, 1251
PspPI GGNCC 3 cut(s) 386, 1113, 1249
PstI CTGCAG 1 cut(s) 1033
PsuI RGATCY 4 cut(s) 74, 675, 1199, 1312
PsyI GACNNNGTC 2 cut(s) 272, 710
PvuI CGATCG 1 cut(s) 1408
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 1417
SacII CCGCGG 1 cut(s) 674
SalI GTCGAC 2 cut(s) 251, 704
SaqAI TTAA 3 cut(s) 1101, 1293, 1344
Sau96I GGNCC 3 cut(s) 386, 1113, 1249
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 1 cut(s) 946
SfaNI GCATC 6 cut(s) 13, 27, 102, 441, 1015, 1496
SfcI CTRYAG 2 cut(s) 133, 1029
Sfr274I CTCGAG 1 cut(s) 615
Sfr303I CCGCGG 1 cut(s) 674
SgrBI CCGCGG 1 cut(s) 674
SinI GGWCC 2 cut(s) 1113, 1249
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 1417
SmlI CTYRAG 3 cut(s) 524, 615, 839
SmoI CTYRAG 3 cut(s) 524, 615, 839
Sse9I AATT 4 cut(s) 294, 313, 974, 1503
SseBI AGGCCT 1 cut(s) 1566
SspMI CTAG 1 cut(s) 957
StuI AGGCCT 1 cut(s) 1566
StyD4I CCNGG 1 cut(s) 944
TaaI ACNGT 4 cut(s) 409, 879, 913, 933
TaiI ACGT 1 cut(s) 258
TasI AATT 4 cut(s) 294, 313, 974, 1503
TatI WGTACW 1 cut(s) 300
TauI GCSGC 7 cut(s) 191, 206, 334, 457, 501, 745, 815
TfiI GAWTC 6 cut(s) 379, 446, 941, 950, 998, 1572
Tru1I TTAA 3 cut(s) 1101, 1293, 1344
Tru9I TTAA 3 cut(s) 1101, 1293, 1344
TscAI CASTG 3 cut(s) 857, 918, 985
TspDTI ATGAA 4 cut(s) 1029, 1062, 1164, 1431
TspGWI ACGGA 3 cut(s) 177, 372, 800
TspRI CASTG 3 cut(s) 857, 918, 985
Tth111I GACNNNGTC 2 cut(s) 272, 710
Van91I CCANNNNNTGG 1 cut(s) 1178
VpaK11BI GGWCC 2 cut(s) 1113, 1249
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 3 cut(s) 294, 974, 1503
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 615
XmiI GTMKAC 2 cut(s) 252, 705
XspI CTAG 1 cut(s) 957
ZraI GACGTC 1 cut(s) 256
Zsp2I ATGCAT 2 cut(s) 6, 1489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.