Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008452

Physical Location & Seq

Genomic Coordinates Forward (+)

30955848 .. 30958557

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGAAAGAAGTGAACCCACCTTAGTTCCAGAATGGTTGAGAAGTACAGGAAGTGTTACTGGGGGTGGCAGTTCAGCCCACCACTTTGCATCATCATCTTCTCACTCAGATGTTTCTTCTTTGGCTAATCACTTGCGAAATAGAACCTCAAAGAGCATAACTGATTTTGATTCACCGCGCTCTGCTTTCCTGGACCGTTCTTCCTCCTCCAATTCCCGGAGAACTTCTAGTAATGGTTCTGCAAAGCATGCTTACAGTAGTTTTAACAGAAGCCACCGTGATAAGGACCGTGAGAAGGAAAAAGAGAGATCAAATTTTGGAGACCATTGGGACCGTGACTCTTCTGACCCTCTAGGAAACATTTTTACCAGCAGGGTTGAGAAGGATACATTGCGACGCTCTCAGTCTATGGTGTCCAGGAAGCAGACTGAACTTTTGCCCCGAAGAGCTGCTATTGACTCAAAAAGTTCCGGTAATAGCAATCATCACAATGGCAATGGTTTGCTTTCTGGTGTTGGAGTTGGTATTCAAAAGGTTGTGTTTGATAAGGATTTTCCCTCACTTGGAACTGAAGAAAGGCCAGCTGCACCTGATATTGGAAGAGTTCCATCTCCTGGATTTAGCACAGCTGTTCAAAGCTTGCCTGTTGGTAGTTCAGCTTTAATTGGTGGGGAGGGATGGACCTCAGCTCTGGCTGAGGTCCCTTCTACTATCATTGGGAGCAGTAGCTCAGGATCCTTTCCTGTTCAACCAACTGTTGCTGCCACTTCAAGTTCTGGGGCTTCAACTGCAATGTCTGGTCTTAACATGGCTGAAGCATTGTCACAAGCTCCAGCAAAAGCTCGCACTGTTCCTCAGTTGTCTATCAAGACACAGAGGCTTGAGGAATTGGCAATCAAGCAATCAAGGCAATTAATTCCAGTGACACCTTCGATGCCCAAACCTTCTGTTCTCAGTTCTTCTGACAAATCAAAGCCCAAAGCAGCAGCTAGACCAGGGGAAACAAATGCGCCAGTTAAGGTTGGACAGCAGCAGCCCTCTCAATTGCAAAATCAATCTCTTCGTGGTGGCTCTGTCAAGTCCGATGCTCCAAAGACTTCTAAGTTCCTTGTTCTCAAACCAGTATGGGAAAATGGAGTCTCCTCTTCATCAAAGGATGTCACTAGTCCAACAAGTAATGCTAGCAGAGCAGCAAATAGCCCACTTGCTGTTGCTCCCCCAGTTGCATCCGTTCCCTTAAGAAGCCCCAACCACCAGAAGCTTTCATCTGTGGATCGATCAATTAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

431

Amino Acids

45.4

Weight (kDa)

10.22

Isoelectric Point (pI)

66.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36990 AT4G08510 AT4G08510
fragaria_vesca	FvH4_5g38960 FvH4_5g38960 FvH4_5g38960 FvH4_5g38960
malus_domestica	MD08G1173100.v1.1 MD15G1358400.v1.1
prunus_persica	Prupe.1G505900_v2.0.a1
pyrus_communis	pycom15g32070 pycom15g32080
rosa_chinensis	RchiOBHm_Chr7g0240931
rosa_laevigata	RLG00000000613
rosa_multiflora	Rmu_sc0001324.1_g000003 Rmu_sc0031641.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219410
rosa_rugosa	Rorug07G0340300
rosa_samantha	Rh7AG494800 Rh7BG466400 Rh7CG512900 Rh7DG479700
rosa_wichuraiana	Rw7G041850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	3 cut(s)	729, 742, 1281
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	2 cut(s)	591, 834
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	6 cut(s)	216, 283, 295, 563, 596, 614
AflII	CTTAAG	1 cut(s)	1237
AgsI	TTSAA	5 cut(s)	530, 635, 749, 771, 786
AhlI	ACTAGT	1 cut(s)	1163
AjnI	CCWGG	4 cut(s)	189, 416, 613, 994
Alw26I	GTCTC	2 cut(s)	315, 1144
AlwI	GGATC	3 cut(s)	729, 742, 1281
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	8 cut(s)	449, 584, 761, 983, 986, 1030, 1033, 1190
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AseI	ATTAAT	1 cut(s)	914
AspLEI	GCGC	2 cut(s)	180, 1012
AspS9I	GGNCC	5 cut(s)	193, 286, 331, 681, 700
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	165
AsuNHI	GCTAGC	1 cut(s)	1181
AvaII	GGWCC	5 cut(s)	193, 286, 331, 681, 700
BamHI	GGATCC	1 cut(s)	734
BbvCI	CCTCAGC	2 cut(s)	685, 696
BbvI	GCAGC	8 cut(s)	436, 571, 748, 995, 998, 1042, 1045, 1202
BccI	CCATC	2 cut(s)	616, 672
BciT130I	CCWGG	4 cut(s)	191, 418, 615, 996
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	315, 1144
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	5 cut(s)	228, 353, 990, 1164, 1182
BfrI	CTTAAG	1 cut(s)	1237
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	8 cut(s)	450, 585, 762, 984, 987, 1031, 1034, 1191
BlsI	GCNGC	8 cut(s)	451, 586, 763, 985, 988, 1032, 1035, 1192
Bme1390I	CCNGG	5 cut(s)	191, 217, 418, 615, 996
Bme18I	GGWCC	5 cut(s)	193, 286, 331, 681, 700
BmgT120I	GGNCC	5 cut(s)	193, 286, 331, 681, 700
BmiI	GGNNCC	3 cut(s)	332, 702, 736
BmrFI	CCNGG	5 cut(s)	191, 217, 418, 615, 996
BmrI	ACTGGG	2 cut(s)	69, 1214
BmsI	GCATC	4 cut(s)	98, 924, 1075, 1235
BmtI	GCTAGC	1 cut(s)	1185
BmuI	ACTGGG	2 cut(s)	69, 1214
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	3 cut(s)	685, 696, 730
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	1276
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	995
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	6 cut(s)	216, 283, 295, 563, 596, 614
Bse1I	ACTGG	5 cut(s)	64, 920, 1013, 1121, 1220
Bse3DI	GCAATG	3 cut(s)	389, 502, 798
BseBI	CCWGG	4 cut(s)	191, 418, 615, 996
BseCI	ATCGAT	1 cut(s)	1276
BseDI	CCNNGG	1 cut(s)	995
BseGI	GGATG	3 cut(s)	683, 1162, 1226
BseLI	CCNNNNNNNGG	6 cut(s)	216, 283, 295, 563, 596, 614
BseMI	GCAATG	3 cut(s)	389, 502, 798
BseMII	CTCAG	7 cut(s)	120, 416, 687, 699, 744, 869, 967
BseNI	ACTGG	5 cut(s)	64, 920, 1013, 1121, 1220
BseRI	GAGGAG	2 cut(s)	196, 1132
BseXI	GCAGC	8 cut(s)	436, 571, 748, 995, 998, 1042, 1045, 1202
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	580
BshVI	ATCGAT	1 cut(s)	1276
BsiSI	CCGG	2 cut(s)	217, 471
BslFI	GGGAC	2 cut(s)	344, 686
BslI	CCNNNNNNNGG	6 cut(s)	216, 283, 295, 563, 596, 614
BsmAI	GTCTC	2 cut(s)	315, 1144
BsmFI	GGGAC	2 cut(s)	344, 686
BsnI	GGCC	1 cut(s)	580
Bso31I	GGTCTC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	308, 734, 1273, 1277
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	7 cut(s)	119, 415, 688, 698, 743, 868, 966
BspDI	ATCGAT	1 cut(s)	1276
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	332, 702, 736
BspOI	GCTAGC	1 cut(s)	1185
BspPI	GGATC	3 cut(s)	729, 742, 1281
BspQI	GCTCTTC	1 cut(s)	439
BspTI	CTTAAG	1 cut(s)	1237
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	3 cut(s)	389, 502, 798
BsrI	ACTGG	5 cut(s)	64, 920, 1013, 1121, 1220
BssECI	CCNNGG	1 cut(s)	995
BssMI	GATC	4 cut(s)	308, 734, 1273, 1277
Bst2UI	CCWGG	4 cut(s)	191, 418, 615, 996
Bst4CI	ACNGT	7 cut(s)	197, 257, 278, 290, 335, 757, 850
Bst6I	CTCTTC	5 cut(s)	346, 439, 595, 1065, 1150
BstAFI	CTTAAG	1 cut(s)	1237
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	5 cut(s)	249, 582, 641, 844, 1183
BstDEI	CTNAG	9 cut(s)	22, 106, 402, 685, 696, 730, 855, 953, 1101
BstF5I	GGATG	3 cut(s)	683, 1162, 1226
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	180, 1012
BstKTI	GATC	4 cut(s)	311, 737, 1276, 1280
BstMAI	GTCTC	2 cut(s)	315, 1144
BstMBI	GATC	4 cut(s)	308, 734, 1273, 1277
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 788, 907, 1187
BstNI	CCWGG	4 cut(s)	191, 418, 615, 996
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	5 cut(s)	189, 215, 416, 613, 994
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	8 cut(s)	436, 571, 748, 995, 998, 1042, 1045, 1202
BstX2I	RGATCY	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	734
Bsu15I	ATCGAT	1 cut(s)	1276
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	580
BsuTUI	ATCGAT	1 cut(s)	1276
BtsCI	GGATG	3 cut(s)	683, 1162, 1226
BtsIMutI	CAGTG	2 cut(s)	846, 927
Cac8I	GCNNGC	5 cut(s)	249, 582, 641, 844, 1183
CfoI	GCGC	2 cut(s)	180, 1012
Cfr13I	GGNCC	5 cut(s)	193, 286, 331, 681, 700
ClaI	ATCGAT	1 cut(s)	1276
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	248, 808
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	9 cut(s)	22, 106, 402, 685, 696, 730, 855, 953, 1101
DpnI	GATC	4 cut(s)	310, 736, 1275, 1279
DpnII	GATC	4 cut(s)	308, 734, 1273, 1277
Eam1104I	CTCTTC	5 cut(s)	346, 439, 595, 1065, 1150
EarI	CTCTTC	5 cut(s)	346, 439, 595, 1065, 1150
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	5 cut(s)	193, 286, 331, 681, 700
Eco57I	CTGAAG	2 cut(s)	591, 834
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	4 cut(s)	189, 416, 613, 994
FaeI	CATG	2 cut(s)	251, 811
FaiI	YATR	5 cut(s)	158, 249, 410, 809, 1126
FaqI	GGGAC	2 cut(s)	344, 686
FatI	CATG	2 cut(s)	247, 807
Fnu4HI	GCNGC	8 cut(s)	450, 585, 762, 984, 987, 1031, 1034, 1191
FokI	GGATG	3 cut(s)	690, 1169, 1213
Fsp4HI	GCNGC	8 cut(s)	450, 585, 762, 984, 987, 1031, 1034, 1191
FspBI	CTAG	5 cut(s)	228, 353, 990, 1164, 1182
GlaI	GCGC	2 cut(s)	179, 1011
GluI	GCNGC	8 cut(s)	450, 585, 762, 984, 987, 1031, 1034, 1191
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	2 cut(s)	217, 471
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	2 cut(s)	180, 1012
Hin1II	CATG	2 cut(s)	251, 811
Hin6I	GCGC	2 cut(s)	178, 1010
HinP1I	GCGC	2 cut(s)	178, 1010
HindIII	AAGCTT	2 cut(s)	637, 1259
HinfI	GANTC	4 cut(s)	170, 338, 458, 1137
HpaII	CCGG	2 cut(s)	217, 471
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	109, 346, 964, 1084
Hpy188III	TCNNGA	3 cut(s)	29, 732, 868
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	5 cut(s)	289, 376, 714, 939, 954
HpyCH4III	ACNGT	7 cut(s)	197, 257, 278, 290, 335, 757, 850
HpyCH4V	TGCA	6 cut(s)	89, 242, 587, 791, 1048, 1226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 788, 907, 1187
HpyF3I	CTNAG	9 cut(s)	22, 106, 402, 685, 696, 730, 855, 953, 1101
Hsp92II	CATG	2 cut(s)	251, 811
HspAI	GCGC	2 cut(s)	178, 1010
Kzo9I	GATC	4 cut(s)	308, 734, 1273, 1277
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	4 cut(s)	720, 835, 1093, 1219
Lsp1109I	GCAGC	8 cut(s)	436, 571, 748, 995, 998, 1042, 1045, 1202
LweI	GCATC	4 cut(s)	98, 924, 1075, 1235
MaeI	CTAG	5 cut(s)	228, 353, 990, 1164, 1182
MaeIII	GTNAC	5 cut(s)	55, 335, 822, 922, 1159
MalI	GATC	4 cut(s)	310, 736, 1275, 1279
MboI	GATC	4 cut(s)	308, 734, 1273, 1277
MfeI	CAATTG	1 cut(s)	1043
MflI	RGATCY	1 cut(s)	734
MluCI	AATT	8 cut(s)	211, 313, 663, 887, 911, 915, 1043, 1281
MlyI	GAGTC	3 cut(s)	332, 452, 1146
MmeI	TCCRAC	3 cut(s)	496, 1003, 1193
MseI	TTAA	8 cut(s)	264, 662, 804, 914, 1017, 1238, 1284, 1291
MslI	CAYNNNNRTG	2 cut(s)	108, 489
MspA1I	CMGCKG	2 cut(s)	584, 629
MspCI	CTTAAG	1 cut(s)	1237
MspI	CCGG	2 cut(s)	217, 471
MspR9I	CCNGG	5 cut(s)	191, 217, 418, 615, 996
MunI	CAATTG	1 cut(s)	1043
MvaI	CCWGG	4 cut(s)	191, 418, 615, 996
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	248, 788, 907, 1187
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	308, 734, 1273, 1277
NheI	GCTAGC	1 cut(s)	1181
NlaIII	CATG	2 cut(s)	251, 811
NlaIV	GGNNCC	3 cut(s)	332, 702, 736
NmuCI	GTSAC	4 cut(s)	335, 822, 922, 1159
NspI	RCATGY	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	614
PfoI	TCCNGGA	4 cut(s)	189, 215, 416, 613
PkrI	GCNGC	8 cut(s)	451, 586, 763, 985, 988, 1032, 1035, 1192
PleI	GAGTC	3 cut(s)	332, 452, 1145
PpsI	GAGTC	3 cut(s)	332, 452, 1145
PpuMI	RGGWCCY	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	914
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	4 cut(s)	189, 416, 613, 994
PspGI	CCWGG	4 cut(s)	189, 416, 613, 994
PspN4I	GGNNCC	3 cut(s)	332, 702, 736
PspPI	GGNCC	5 cut(s)	193, 286, 331, 681, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	734
PvuII	CAGCTG	2 cut(s)	584, 629
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	108, 489
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	8 cut(s)	264, 662, 804, 914, 1017, 1238, 1284, 1291
SatI	GCNGC	8 cut(s)	450, 585, 762, 984, 987, 1031, 1034, 1191
Sau3AI	GATC	4 cut(s)	308, 734, 1273, 1277
Sau96I	GGNCC	5 cut(s)	193, 286, 331, 681, 700
SchI	GAGTC	3 cut(s)	332, 452, 1146
ScrFI	CCNGG	5 cut(s)	191, 217, 418, 615, 996
SfaNI	GCATC	4 cut(s)	98, 924, 1075, 1235
SinI	GGWCC	5 cut(s)	193, 286, 331, 681, 700
SmiMI	CAYNNNNRTG	2 cut(s)	108, 489
SmlI	CTYRAG	2 cut(s)	881, 1237
SmoI	CTYRAG	2 cut(s)	881, 1237
SpeI	ACTAGT	1 cut(s)	1163
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	8 cut(s)	211, 313, 663, 887, 911, 915, 1043, 1281
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	5 cut(s)	228, 353, 990, 1164, 1182
StyD4I	CCNGG	5 cut(s)	189, 215, 416, 613, 994
TaaI	ACNGT	7 cut(s)	197, 257, 278, 290, 335, 757, 850
TaqI	TCGA	2 cut(s)	932, 1276
TasI	AATT	8 cut(s)	211, 313, 663, 887, 911, 915, 1043, 1281
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	8 cut(s)	264, 662, 804, 914, 1017, 1238, 1284, 1291
Tru9I	TTAA	8 cut(s)	264, 662, 804, 914, 1017, 1238, 1284, 1291
TscAI	CASTG	2 cut(s)	853, 927
TseFI	GTSAC	4 cut(s)	335, 822, 922, 1159
TseI	GCWGC	8 cut(s)	449, 584, 761, 983, 986, 1030, 1033, 1190
Tsp45I	GTSAC	4 cut(s)	335, 822, 922, 1159
TspDTI	ATGAA	2 cut(s)	1137, 1254
TspGWI	ACGGA	1 cut(s)	1219
TspRI	CASTG	2 cut(s)	853, 927
Van91I	CCANNNNNTGG	1 cut(s)	614
Vha464I	CTTAAG	1 cut(s)	1237
VpaK11BI	GGWCC	5 cut(s)	193, 286, 331, 681, 700
VspI	ATTAAT	1 cut(s)	914
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	5 cut(s)	228, 353, 990, 1164, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.