Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008476

Physical Location & Seq

Genomic Coordinates Reverse (-)

30989711 .. 30992325

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGAACACCGACGTTTTCTTAGGACTGCAGGACTTTCTGGAACGCATGCGTCAACCGTCGGCCGCCGATTTAGTCAAGTCTATAAAAAGCTTCATAGTGTCGTTTTCGAACAATGCTCCTGATCCGGAGAGGGACAGCGCCGCAGTGCAGGACTTCTTTGCCCGGATGGAAATTGATTTCAGGGCTCATCCACTTTGGGCTGGCTGTTCAGAGGAGGAGCTCGACGGCGCCGGCGAAGGGCTGGAGAAGTATGTTATGACGAAGTTATTTCCTCGCGTATTTGCTTCACTTCCAGATGATGTGAAACTCGATGAGCAACTGTATGAGAAGATGGCTTTAGTACAACAGTTTATTAGGCCGGAAAATTTGGACATTAAGCCCACCTTTCAAAATGAGACTTCATGGCTGCTTGCACAAAAAGAACTGCAAAAGATCAATATGTACAAGGCACCGAGGGATAAGCTTGTGTGCATCCTTAATTGTTGCAAGGTTATTAATAACTTGCTCATGAAAGCTTCTGTTGCTTCCAATGAGAATCCCCCTGGAGCTGATGAATTTCTTCCTGTCCTAATTTATGTTACGTTAAAGGCAAACCCTCCACAACTGCACTTAAATTTATTGTATATACAAAGGTACAGGCGACAATCTCGATTAGTTGGTGAAGCATCCTATTTTTTCACAAACATGCTCTCCGTTGAATCCTTCATCTCAAATATTGATGCAAACGCCATTTCAATGGATGAATCTGAGTATGACAAGAACATGGAAACTGCTCGAGCACTTCTTTCTGGACTTTCAGCTGATCGATCAACTGGACAGTCAGTATTCTCAAAAAGGTCAATTTGCAGGATATGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007049 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0017016 GO:0017048 GO:0019899 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0051020 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071840 GO:0090696 GO:0098772 GO:0099402 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

288

Amino Acids

32.69

Weight (kDa)

5.11

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5601	PF18151	27 - 91	9.1e-15	Domain of unknown function (DUF5601)
VPS9	PF02204	137 - 241	5.1e-31	Vacuolar sorting protein 9 (VPS9) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19770 AT3G19770 AT5G09320
fragaria_vesca	FvH4_5g38820 FvH4_5g38820
malus_domestica	MD00G1104300.v1.1 MD15G1358700.v1.1
prunus_persica	Prupe.1G506400_v2.0.a1 Prupe.1G506400_v2.0.a1
pyrus_communis	pycom08g14820 pycom15g32120
rosa_chinensis	RchiOBHm_Chr7g0240821
rosa_laevigata	RLG00000000622
rosa_multiflora	Rmu_sc0004821.1_g000014 Rmu_sc0010888.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219600
rosa_rugosa	Rorug07G0339300 Rorug07G0339300
rosa_samantha	Rh7AG493500 Rh7BG465500 Rh7CG512000 Rh7DG478700
rosa_wichuraiana	Rw7G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	230, 451
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	2 cut(s)	66, 144
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	3 cut(s)	367, 557, 616
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	345, 446, 638
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	392, 701, 738
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	6 cut(s)	93, 223, 466, 518, 551, 803
AluI	AGCT	6 cut(s)	93, 223, 466, 518, 551, 803
Alw21I	GWGCWC	2 cut(s)	225, 784
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	777
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	2 cut(s)	63, 359
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	3 cut(s)	367, 557, 616
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	2 cut(s)	143, 233
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	777
BanI	GGYRCC	2 cut(s)	230, 451
BanII	GRGCYC	2 cut(s)	190, 225
Bbv12I	GWGCWC	2 cut(s)	225, 784
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	163, 328
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	29
BfoI	RGCGCY	2 cut(s)	144, 234
BisI	GCNGC	3 cut(s)	66, 144, 410
BlsI	GCNGC	3 cut(s)	67, 145, 411
Bme1390I	CCNGG	2 cut(s)	166, 546
BmeT110I	CYCGRG	1 cut(s)	777
BmiI	GGNNCC	2 cut(s)	232, 453
BmrFI	CCNGG	2 cut(s)	166, 546
BmsI	GCATC	3 cut(s)	483, 677, 712
BpmI	CTGGAG	2 cut(s)	266, 567
Bpu14I	TTCGAA	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	808
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	455, 544
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	820
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	808
BseDI	CCNNGG	2 cut(s)	455, 544
BseGI	GGATG	5 cut(s)	174, 190, 474, 668, 748
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	2 cut(s)	230, 233
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	2 cut(s)	170, 593
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	65, 361
BshNI	GGYRCC	2 cut(s)	230, 451
BshVI	ATCGAT	1 cut(s)	808
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	225, 784
BsiHKCI	CYCGRG	1 cut(s)	777
BsiSI	CCGG	4 cut(s)	128, 166, 234, 362
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	65, 361
BsoBI	CYCGRG	1 cut(s)	777
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	190, 225, 784
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	124, 435, 805, 809
BspACI	CCGC	2 cut(s)	66, 144
BspANI	GGCC	2 cut(s)	65, 361
BspCNI	CTCAG	1 cut(s)	742
BspDI	ATCGAT	1 cut(s)	808
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	232, 453
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	2 cut(s)	230, 451
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	820
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	455, 544
BssMI	GATC	4 cut(s)	124, 435, 805, 809
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	60, 324, 351, 822
BstACI	GRCGYC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	444
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	4 cut(s)	50, 205, 235, 414
BstDEI	CTNAG	2 cut(s)	22, 750
BstF5I	GGATG	5 cut(s)	174, 190, 474, 668, 748
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	2 cut(s)	144, 234
BstHHI	GCGC	2 cut(s)	143, 233
BstKTI	GATC	4 cut(s)	127, 438, 808, 812
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	4 cut(s)	124, 435, 805, 809
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	52, 691
BstSCI	CCNGG	2 cut(s)	164, 544
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstZI	CGGCCG	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	65, 361
BsuTUI	ATCGAT	1 cut(s)	808
BtsCI	GGATG	5 cut(s)	174, 190, 474, 668, 748
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	50, 205, 235, 414
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	143, 233
Cfr10I	RCCGGY	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	808
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	344, 445, 637
CviAII	CATG	5 cut(s)	49, 405, 511, 688, 766
CviQI	GTAC	3 cut(s)	344, 445, 637
DdeI	CTNAG	2 cut(s)	22, 750
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	4 cut(s)	126, 437, 807, 811
DpnII	GATC	4 cut(s)	124, 435, 805, 809
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	190, 225
Eco52I	CGGCCG	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	777
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	190, 225
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	5 cut(s)	52, 408, 514, 691, 769
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	5 cut(s)	48, 404, 510, 687, 765
Fnu4HI	GCNGC	3 cut(s)	66, 144, 410
FokI	GGATG	5 cut(s)	177, 181, 461, 655, 755
FriOI	GRGCYC	2 cut(s)	190, 225
Fsp4HI	GCNGC	3 cut(s)	66, 144, 410
GlaI	GCGC	2 cut(s)	142, 232
GluI	GCNGC	3 cut(s)	66, 144, 410
GsuI	CTGGAG	2 cut(s)	266, 567
HaeII	RGCGCY	2 cut(s)	144, 234
HaeIII	GGCC	2 cut(s)	65, 361
HapII	CCGG	4 cut(s)	128, 166, 234, 362
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	143, 233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	52, 408, 514, 691, 769
Hin6I	GCGC	2 cut(s)	141, 231
HinP1I	GCGC	2 cut(s)	141, 231
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	3 cut(s)	91, 464, 516
HinfI	GANTC	3 cut(s)	538, 701, 746
HpaII	CCGG	4 cut(s)	128, 166, 234, 362
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	214, 751
Hpy188III	TCNNGA	7 cut(s)	41, 122, 128, 296, 511, 651, 792
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	3 cut(s)	17, 64, 230
HpyAV	CCTTC	2 cut(s)	233, 715
HpyCH4III	ACNGT	4 cut(s)	60, 324, 351, 822
HpyCH4IV	ACGT	2 cut(s)	15, 584
HpyCH4V	TGCA	9 cut(s)	31, 151, 416, 430, 474, 489, 610, 725, 849
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	22, 750
HpySE526I	ACGT	2 cut(s)	15, 584
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	52, 408, 514, 691, 769
HspAI	GCGC	2 cut(s)	141, 231
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	124, 435, 805, 809
LmnI	GCTCC	3 cut(s)	124, 220, 548
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	3 cut(s)	483, 677, 712
MaeII	ACGT	2 cut(s)	15, 584
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	4 cut(s)	126, 437, 807, 811
MboI	GATC	4 cut(s)	124, 435, 805, 809
MboII	GAAGA	2 cut(s)	343, 554
MhlI	GDGCHC	3 cut(s)	190, 225, 784
MluCI	AATT	7 cut(s)	174, 367, 481, 557, 573, 616, 843
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	126, 208, 211, 285, 450, 609
MreI	CGCCGGCG	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	127
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	5 cut(s)	378, 480, 498, 587, 614
MslI	CAYNNNNRTG	2 cut(s)	686, 737
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	4 cut(s)	128, 166, 234, 362
MspR9I	CCNGG	2 cut(s)	166, 546
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	524
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	124, 435, 805, 809
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	52, 408, 514, 691, 769
NlaIV	GGNNCC	2 cut(s)	232, 453
NspI	RCATGY	2 cut(s)	52, 691
NspV	TTCGAA	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	777
PagI	TCATGA	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	3 cut(s)	538, 701, 746
PkrI	GCNGC	3 cut(s)	67, 145, 411
PluTI	GGCGCC	1 cut(s)	234
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	232, 453
PspXI	VCTCGAGB	1 cut(s)	777
PstI	CTGCAG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	3 cut(s)	345, 446, 638
RsaNI	GTAC	3 cut(s)	344, 445, 637
RseI	CAYNNNNRTG	2 cut(s)	686, 737
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	378, 480, 498, 587, 614
SatI	GCNGC	3 cut(s)	66, 144, 410
Sau3AI	GATC	4 cut(s)	124, 435, 805, 809
ScrFI	CCNGG	2 cut(s)	166, 546
SduI	GDGCHC	3 cut(s)	190, 225, 784
SfaNI	GCATC	3 cut(s)	483, 677, 712
SfcI	CTRYAG	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	777
SfuI	TTCGAA	1 cut(s)	110
SgrAI	CRCCGGYG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	2 cut(s)	686, 737
SmlI	CTYRAG	1 cut(s)	777
SmoI	CTYRAG	1 cut(s)	777
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	7 cut(s)	174, 367, 481, 557, 573, 616, 843
SsiI	CCGC	2 cut(s)	66, 144
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	718
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	164, 544
TaaI	ACNGT	4 cut(s)	60, 324, 351, 822
TaiI	ACGT	2 cut(s)	18, 587
TaqI	TCGA	6 cut(s)	110, 225, 312, 652, 778, 808
TasI	AATT	7 cut(s)	174, 367, 481, 557, 573, 616, 843
TatI	WGTACW	2 cut(s)	343, 444
TauI	GCSGC	2 cut(s)	68, 146
TfiI	GAWTC	3 cut(s)	538, 701, 746
Tru1I	TTAA	5 cut(s)	378, 480, 498, 587, 614
Tru9I	TTAA	5 cut(s)	378, 480, 498, 587, 614
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	6 cut(s)	85, 393, 527, 570, 697, 759
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	3 cut(s)	367, 557, 616
XceI	RCATGY	2 cut(s)	52, 691
XhoI	CTCGAG	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.