pycom15g34930

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012995
Physical Location & Seq
Forward (+)
34828704 .. 34831447
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2076 bp
ATGGACAAAACAGAAAAGATCACACCTTTATGTTTGGACCGAGCCTGCCCTGCTACCAGCCCACCCCCTCATTTGCCCCCCAATTTTCCAACGACGACGAAGCCCTCTTCGTTACCCCGCATTTTGCAGAAGCAACAAGGTAACGACATAAAACGGATAAGCAAAACGGCGGCACATTGTCACCCACCACCGCCTCTTCACTCTTTCTTCTTTCAACCCTCTGCTGTCTGCACCCTCTCTTATGTAATACTCCTTCTGTTTGGAAACGAAGGTAGCTCACTCTGCTCTGGAGTTGATAGGGTGAGGACAAGAAGGACTGGTAATTTTGGAGCTAGGGTCTGTGGTAAGGTTGGTCTCACCACTCCCGATTATCGGAGGCTCTTTGTGGGCAGCAGAGCTCGGTTTCTTGCTCTCCCCGATGGCATTCAGTGTAGGATACAGGACGGTTACCAGAAACATAGGCGAAAGCGTGTACTTGCTGTGTCGAAAGTCGAAACTTTTAGTTCCAATGGTAGGCTGCAGAATGTTGAGTATACCCCACATGGGGGTTTGAATGGAATGGACTCTTCCAATGGTTTTGAGGAATTCGAGAGTAATAATCAGCTTCGTAGGCTGGTTAGAAATGGGGAATTAGAAGAGGGATTTAAGTTTCTAGAGAACATGCTTTATCATGGTGATATGCCGGATATTATTGCGTGTACGAGTTTAATCAGGGGGTTTTGTAAGAGTGGAAAGACAAGGAAGGCGACGCGGATTATGAACATTCTAGAAGAATCTGGGGCTATCCTTGATGTTATAACTTACAATGTCTTGATCGATGGCTACTGCAAGGCTGGTGAGATTGATAATGCTTTGAGGGTTTTGGACCGAATGAGTGTTTCTCCAGATGTTGTTACATACAATACAATCTTGCGTACTTTATGTGATAGTGGGAAATTGAAGCAAGCGATGGAAGTTCTTGATCGACAGCTGCAAAGGGAGTGTTATCCAGATGTGATTACGTATACCATACTGATTGAAGCAACTTGCAAGGAAAGTGGGGTTGAGCAGGCGATGAAGCTTTTGGATGAGATGAGGAGCAAAGGATGCAAGCCTGATGTGGTCACTTATAATGTTCTTATCAACGGGATATGCAAGGAAGGAAGGTTGGATGAAGCAATCAAATTCTTGAACGACATGCCGTCATCTGATTGCCAACCAAATGTCATTACCCACAATATTGTTTTGCGTAGCATGTGCAGCACTGGCAGATGGATGGATGCTGAAAAACTATTAGCTGAAATGGTTCACAGAGGCTGTTCTCCTAGTGTTGTTACTTTCAATATTTTGATTAACTTCTTGTGCCGGAAGGGCTTGTTGGGTAGAGCAATTGACATTTTGGAGAAGATGCCTAAGCATGGCTGTACTCCAAATTCCTTGAGTTACAACCCATTGCTTCACGGATTTTGCAAGGAAAGAAAGATGGATAGGGCGATTGAGTATTTGGATATAATGGTTTCTCGGGGCTGTTATCCAGACATTGTGACCTACAATACTTTGCTTACAGCTTTGTGCAAAGATGGAAAGGTTGATAGCGCAGTTGAGATACTTAATCAACTAAGTAGCAAGGGTTGCTCTCCTGTTCTAATCACATACAATACAGTGATTGATGGGCTCTCAAAGGTGGGGAAAACAGAACGTGCCTTAGAACTTTTGCATGAGATGCGCAAAAAGGGTTTAAAGCCTGATGTAATTACTTATTCTTCTCTCGTGGGAGGGCTTAGCAGAGAAGGAAAGGTTGATGAAGCAATTAAGTTTGTACATGATTTGGAAGATTCGGGTGTCAAGCCCAATGCTATCACTTTTAACTCCATCATGTTGGGTCTTTGCAAGGCTAAGCAAACTGGTCGTGCAATTGATTTCCTCGCGTATATGGTATCTAAAGGATGTCAACCTACTGAAGCAACATACACCATTCTCATTGAAGGCATAGCTTATGAAGGATTAACAAAAGAGGCTTTGGATTTATTGAATGAACTCTGCTATAGAGGGGTTGTGAAGAAAAGCTCTGCTGAACAGGTGGCAGTCAAGATGTAG

Protein Analysis

692

Amino Acids

76.77

Weight (kDa)

8.69

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 228 - 277 7.6e-13 PPR repeat family
TPR_24 PF23276 241 - 322 2.8e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 263 - 292 1.3e-12 PPR repeat
PPR_2 PF13041 264 - 292 1.5e-07 PPR repeat family
PPR PF01535 266 - 291 1e-07 PPR repeat
PPR_3 PF13812 288 - 342 9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 292 - 321 1.9e-09 PPR repeat
PPR_2 PF13041 295 - 344 9.8e-15 PPR repeat family
TPR_24 PF23276 302 - 424 1e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 327 - 359 5.4e-10 PPR repeat
PPR_3 PF13812 330 - 377 6.1e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 330 - 379 1.1e-19 PPR repeat family
PPR_1 PF12854 361 - 393 1.5e-16 PPR repeat
PPR_2 PF13041 365 - 413 8.2e-19 PPR repeat family
PPR PF01535 368 - 398 7.3e-08 PPR repeat
PPR_3 PF13812 390 - 446 5.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 397 - 429 6e-08 PPR repeat
PPR_2 PF13041 406 - 449 1.4e-12 PPR repeat family
PPR_long PF17177 423 - 536 3.7e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 423 - 481 5.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 431 - 463 1e-11 PPR repeat
PPR_2 PF13041 435 - 484 1.4e-15 PPR repeat family
PPR PF01535 438 - 468 3.5e-06 PPR repeat
TPR_24 PF23276 445 - 566 2.9e-12 Fungal tetratrico peptide repeats
PPR_1 PF12854 467 - 499 3.4e-08 PPR repeat
PPR_2 PF13041 470 - 519 2.7e-16 PPR repeat family
PPR_3 PF13812 496 - 549 4.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 501 - 532 2.6e-12 PPR repeat
PPR_2 PF13041 505 - 540 2.4e-10 PPR repeat family
PPR PF01535 508 - 538 5.1e-07 PPR repeat
TPR_24 PF23276 526 - 633 1.9e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 536 - 569 1.3e-09 PPR repeat
PPR_2 PF13041 542 - 588 2.3e-16 PPR repeat family
PPR PF01535 543 - 573 7.7e-09 PPR repeat
PPR_3 PF13812 544 - 585 9.2e-08 Pentatricopeptide repeat domain
PPR_long PF17177 558 - 673 1.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 571 - 602 5e-10 PPR repeat
PPR_2 PF13041 583 - 624 2.2e-09 PPR repeat family
PPR_3 PF13812 600 - 655 3.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 607 - 639 8.5e-06 PPR repeat
PPR_2 PF13041 610 - 657 7.6e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09900
fragaria_vesca FvH4_5g34030
malus_domestica MD08G1206600.v1.1 MD15G1390100.v1.1
prunus_persica Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1
pyrus_communis pycom08g17840 pycom15g34930
rosa_chinensis RchiOBHm_Chr7g0233521
rosa_laevigata RLG00000001253
rosa_multiflora Rmu_sc0000029.1_g000012
rosa_roxburghii Rroxscaffold_3G00227230
rosa_rugosa Rorug07G0281100.1
rosa_samantha Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500
rosa_wichuraiana Rw7G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 797, 1110
Acc16I TGCGCA 1 cut(s) 1706
AccI GTMKAC 2 cut(s) 533, 1004
AccII CGCG 2 cut(s) 751, 1907
AciI CCGC 4 cut(s) 118, 170, 191, 751
AcsI RAATTY 3 cut(s) 584, 1163, 1411
AcuI CTGAAG 1 cut(s) 1959
AfaI GTAC 5 cut(s) 474, 700, 916, 1405, 1800
AfiI CCNNNNNNNGG 6 cut(s) 372, 513, 543, 544, 545, 1397
AgsI TTSAA 8 cut(s) 215, 553, 940, 1019, 1171, 1321, 1964, 2011
AhdI GACNNNNNGTC 1 cut(s) 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 1340, 1372
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 1296
Ama87I CYCGRG 1 cut(s) 1500
ApeKI GCWGC 4 cut(s) 390, 517, 970, 1239
ApoI RAATTY 3 cut(s) 584, 1163, 1411
Asp700I GAANNNNTTC 1 cut(s) 1284
AspLEI GCGC 2 cut(s) 1577, 1707
AspS9I GGNCC 2 cut(s) 37, 865
AsuHPI GGTGA 5 cut(s) 173, 313, 349, 686, 848
AvaI CYCGRG 1 cut(s) 1500
AvaII GGWCC 2 cut(s) 37, 865
BanII GRGCYC 2 cut(s) 400, 1656
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BauI CACGAG 1 cut(s) 1748
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 4 cut(s) 402, 504, 957, 1251
BccI CCATC 9 cut(s) 413, 812, 943, 1245, 1249, 1456, 1553, 1643, 1859
BceAI ACGGC 2 cut(s) 183, 1165
BcgI CGANNNNNNTGC 2 cut(s) 1868, 1902
BciVI GTATCC 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 4 cut(s) 333, 653, 767, 1305
BfmI CTRYAG 2 cut(s) 518, 2023
BfuI GTATCC 1 cut(s) 429
BglI GCCNNNNNGGC 1 cut(s) 1350
BisI GCNGC 5 cut(s) 171, 391, 518, 971, 1240
BlpI GCTNAGC 2 cut(s) 1760, 1875
BlsI GCNGC 5 cut(s) 172, 392, 519, 972, 1241
Bme18I GGWCC 2 cut(s) 37, 865
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmeT110I CYCGRG 1 cut(s) 1500
BmgT120I GGNCC 2 cut(s) 37, 865
BmsI GCATC 4 cut(s) 1076, 1249, 1377, 1692
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 2 cut(s) 309, 867
Bpu10I CCTNAGC 1 cut(s) 1392
Bpu1102I GCTNAGC 2 cut(s) 1760, 1875
BpuEI CTTGAG 1 cut(s) 1438
Bsa29I ATCGAT 1 cut(s) 816
BsaAI YACGTR 1 cut(s) 1002
BsaI GGTCTC 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 6 cut(s) 372, 513, 543, 544, 545, 1397
Bse1I ACTGG 3 cut(s) 322, 1249, 1888
Bse3DI GCAATG 1 cut(s) 1430
BseCI ATCGAT 1 cut(s) 816
BseGI GGATG 6 cut(s) 1072, 1091, 1156, 1260, 1264, 1931
BseLI CCNNNNNNNGG 6 cut(s) 372, 513, 543, 544, 545, 1397
BseMI GCAATG 1 cut(s) 1430
BseNI ACTGG 3 cut(s) 322, 1249, 1888
BseRI GAGGAG 1 cut(s) 1090
BseXI GCAGC 4 cut(s) 402, 504, 957, 1251
BsgI GTGCAG 2 cut(s) 214, 1258
Bsh1236I CGCG 2 cut(s) 751, 1907
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 1500
BsiSI CCGG 2 cut(s) 683, 1345
BslI CCNNNNNNNGG 6 cut(s) 372, 513, 543, 544, 545, 1397
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 423
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 1500
Bsp1286I GDGCHC 2 cut(s) 400, 1656
Bsp1407I TGTACA 1 cut(s) 1798
Bsp143I GATC 3 cut(s) 18, 813, 961
Bsp1720I GCTNAGC 2 cut(s) 1760, 1875
BspACI CCGC 4 cut(s) 118, 170, 191, 751
BspDI ATCGAT 1 cut(s) 816
BspFNI CGCG 2 cut(s) 751, 1907
BspMAI CTGCAG 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 1430
BsrGI TGTACA 1 cut(s) 1798
BsrI ACTGG 3 cut(s) 322, 1249, 1888
BssMI GATC 3 cut(s) 18, 813, 961
BssNAI GTATAC 2 cut(s) 534, 1005
BssSI CACGAG 1 cut(s) 1748
Bst1107I GTATAC 2 cut(s) 534, 1005
Bst2BI CACGAG 1 cut(s) 1748
Bst4CI ACNGT 2 cut(s) 446, 1642
Bst6I CTCTTC 4 cut(s) 112, 201, 571, 630
BstAPI GCANNNNNTGC 3 cut(s) 1086, 1611, 1702
BstAUI TGTACA 1 cut(s) 1798
BstBAI YACGTR 1 cut(s) 1002
BstC8I GCNNGC 4 cut(s) 46, 945, 1050, 1091
BstDEI CTNAG 5 cut(s) 1392, 1598, 1684, 1760, 1875
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 6 cut(s) 1072, 1091, 1156, 1260, 1264, 1931
BstFNI CGCG 2 cut(s) 751, 1907
BstHHI GCGC 2 cut(s) 1577, 1707
BstKTI GATC 3 cut(s) 21, 816, 964
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 18, 813, 961
BstMWI GCNNNNNNNGC 9 cut(s) 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702
BstNSI RCATGY 3 cut(s) 664, 1180, 1237
BstPI GGTNACC 1 cut(s) 446
BstSFI CTRYAG 2 cut(s) 518, 2023
BstSNI TACGTA 1 cut(s) 1002
BstUI CGCG 2 cut(s) 751, 1907
BstV1I GCAGC 4 cut(s) 402, 504, 957, 1251
BstXI CCANNNNNNTGG 1 cut(s) 1858
BstZ17I GTATAC 2 cut(s) 534, 1005
Bsu15I ATCGAT 1 cut(s) 816
BsuI GTATCC 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 816
BtgZI GCGATG 2 cut(s) 962, 1067
BtsCI GGATG 6 cut(s) 1072, 1091, 1156, 1260, 1264, 1931
BtsIMutI CAGTG 3 cut(s) 434, 1242, 1647
Cac8I GCNNGC 4 cut(s) 46, 945, 1050, 1091
CaiI CAGNNNCTG 1 cut(s) 1296
CfoI GCGC 2 cut(s) 1577, 1707
Cfr13I GGNCC 2 cut(s) 37, 865
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 757
Csp6I GTAC 5 cut(s) 473, 699, 915, 1404, 1799
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 9 cut(s) 542, 661, 671, 1177, 1234, 1397, 1697, 1802, 1855
CviQI GTAC 5 cut(s) 473, 699, 915, 1404, 1799
DdeI CTNAG 5 cut(s) 1392, 1598, 1684, 1760, 1875
DpnI GATC 3 cut(s) 20, 815, 963
DpnII GATC 3 cut(s) 18, 813, 961
DraI TTTAAA 1 cut(s) 1719
DriI GACNNNNNGTC 1 cut(s) 1180
Eam1104I CTCTTC 4 cut(s) 112, 201, 571, 630
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 4 cut(s) 112, 201, 571, 630
Ecl136II GAGCTC 1 cut(s) 398
Eco105I TACGTA 1 cut(s) 1002
Eco24I GRGCYC 2 cut(s) 400, 1656
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 37, 865
Eco53kI GAGCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 1959
Eco88I CYCGRG 1 cut(s) 1500
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 584
EcoT38I GRGCYC 2 cut(s) 400, 1656
FaeI CATG 9 cut(s) 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858
FatI CATG 9 cut(s) 541, 660, 670, 1176, 1233, 1396, 1696, 1801, 1854
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 2 cut(s) 533, 1004
Fnu4HI GCNGC 5 cut(s) 171, 391, 518, 971, 1240
FokI GGATG 6 cut(s) 1079, 1098, 1163, 1267, 1271, 1938
FriOI GRGCYC 2 cut(s) 400, 1656
Fsp4HI GCNGC 5 cut(s) 171, 391, 518, 971, 1240
FspBI CTAG 4 cut(s) 333, 653, 767, 1305
FspI TGCGCA 1 cut(s) 1706
GlaI GCGC 2 cut(s) 1576, 1706
GluI GCNGC 5 cut(s) 171, 391, 518, 971, 1240
GsuI CTGGAG 2 cut(s) 309, 867
HapII CCGG 2 cut(s) 683, 1345
HgaI GACGC 1 cut(s) 757
HhaI GCGC 2 cut(s) 1577, 1707
Hin1II CATG 9 cut(s) 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858
Hin6I GCGC 2 cut(s) 1575, 1705
HinP1I GCGC 2 cut(s) 1575, 1705
HincII GTYRAC 1 cut(s) 1931
HindII GTYRAC 1 cut(s) 1931
HindIII AAGCTT 1 cut(s) 1058
HinfI GANTC 3 cut(s) 563, 773, 1814
HpaII CCGG 2 cut(s) 683, 1345
HphI GGTGA 5 cut(s) 173, 313, 349, 686, 848
Hpy166II GTNNAC 6 cut(s) 473, 534, 699, 1005, 1288, 1931
Hpy188I TCNGA 2 cut(s) 375, 1189
Hpy8I GTNNAC 6 cut(s) 473, 534, 699, 1005, 1288, 1931
Hpy99I CGWCG 3 cut(s) 97, 100, 751
HpyCH4III ACNGT 2 cut(s) 446, 1642
HpyCH4IV ACGT 2 cut(s) 1001, 1678
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702
HpyF3I CTNAG 5 cut(s) 1392, 1598, 1684, 1760, 1875
HpySE526I ACGT 2 cut(s) 1001, 1678
Hsp92II CATG 9 cut(s) 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858
HspAI GCGC 2 cut(s) 1575, 1705
Kzo9I GATC 3 cut(s) 18, 813, 961
LmnI GCTCC 2 cut(s) 329, 1077
Lsp1109I GCAGC 4 cut(s) 402, 504, 957, 1251
LweI GCATC 4 cut(s) 1076, 1249, 1377, 1692
MaeI CTAG 4 cut(s) 333, 653, 767, 1305
MaeII ACGT 2 cut(s) 1001, 1678
MaeIII GTNAC 9 cut(s) 111, 140, 179, 446, 892, 1102, 1312, 1421, 1522
MalI GATC 3 cut(s) 20, 815, 963
MboI GATC 3 cut(s) 18, 813, 961
MfeI CAATTG 2 cut(s) 1368, 1893
MhlI GDGCHC 2 cut(s) 400, 1656
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 113, 1128
MroXI GAANNNNTTC 1 cut(s) 1284
MseI TTAA 8 cut(s) 645, 707, 1332, 1590, 1718, 1791, 1845, 1985
MslI CAYNNNNRTG 1 cut(s) 28
MspA1I CMGCKG 1 cut(s) 970
MspI CCGG 2 cut(s) 683, 1345
MunI CAATTG 2 cut(s) 1368, 1893
Mva1269I GAATGC 1 cut(s) 423
MvnI CGCG 2 cut(s) 751, 1907
MwoI GCNNNNNNNGC 9 cut(s) 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702
NdeII GATC 3 cut(s) 18, 813, 961
NlaIII CATG 9 cut(s) 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858
NmuCI GTSAC 3 cut(s) 179, 1102, 1522
NsbI TGCGCA 1 cut(s) 1706
NspI RCATGY 3 cut(s) 664, 1180, 1237
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 1284
PfeI GAWTC 2 cut(s) 773, 1814
PkrI GCNGC 5 cut(s) 172, 392, 519, 972, 1241
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 1002
PsiI TTATAA 2 cut(s) 797, 1110
Psp124BI GAGCTC 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 446
PspPI GGNCC 2 cut(s) 37, 865
PstI CTGCAG 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 1296
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 5 cut(s) 474, 700, 916, 1405, 1800
RsaNI GTAC 5 cut(s) 473, 699, 915, 1404, 1799
RseI CAYNNNNRTG 1 cut(s) 28
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 8 cut(s) 645, 707, 1332, 1590, 1718, 1791, 1845, 1985
SatI GCNGC 5 cut(s) 171, 391, 518, 971, 1240
Sau3AI GATC 3 cut(s) 18, 813, 961
Sau96I GGNCC 2 cut(s) 37, 865
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 2 cut(s) 400, 1656
SfaNI GCATC 4 cut(s) 1076, 1249, 1377, 1692
SfcI CTRYAG 2 cut(s) 518, 2023
SinI GGWCC 2 cut(s) 37, 865
SmiMI CAYNNNNRTG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 1417
SmoI CTYRAG 1 cut(s) 1417
SnaBI TACGTA 1 cut(s) 1002
SsiI CCGC 4 cut(s) 118, 170, 191, 751
SspI AATATT 2 cut(s) 1219, 1324
SspMI CTAG 4 cut(s) 333, 653, 767, 1305
SstI GAGCTC 1 cut(s) 400
TaaI ACNGT 2 cut(s) 446, 1642
TaiI ACGT 2 cut(s) 1004, 1681
TaqI TCGA 5 cut(s) 485, 492, 588, 816, 964
TaqII GACCGA 2 cut(s) 54, 882
TatI WGTACW 3 cut(s) 472, 1403, 1798
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 773, 1814
Tru1I TTAA 8 cut(s) 645, 707, 1332, 1590, 1718, 1791, 1845, 1985
Tru9I TTAA 8 cut(s) 645, 707, 1332, 1590, 1718, 1791, 1845, 1985
TscAI CASTG 3 cut(s) 434, 1249, 1647
TseFI GTSAC 3 cut(s) 179, 1102, 1522
TseI GCWGC 4 cut(s) 390, 517, 970, 1239
Tsp45I GTSAC 3 cut(s) 179, 1102, 1522
TspDTI ATGAA 6 cut(s) 773, 1070, 1167, 1797, 1992, 2028
TspGWI ACGGA 2 cut(s) 169, 1455
TspRI CASTG 3 cut(s) 434, 1249, 1647
VpaK11BI GGWCC 2 cut(s) 37, 865
XapI RAATTY 3 cut(s) 584, 1163, 1411
XbaI TCTAGA 2 cut(s) 652, 766
XceI RCATGY 3 cut(s) 664, 1180, 1237
XmiI GTMKAC 2 cut(s) 533, 1004
XmnI GAANNNNTTC 1 cut(s) 1284
XspI CTAG 4 cut(s) 333, 653, 767, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.