pycom15g36440

phosphoinositide phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006129
Physical Location & Seq
Forward (+)
36445027 .. 36447632
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
ATGGCGAAACCTGACAAGTCGAAGCCCAATATCCCCCAATACGTCCGTTCCTCCGCCAAAGTCCACCCCTCCAACGACTTCGACGCCGACCCCAACTCCTACTCCCTCGAAAAGTTTAAGCTCTACGAGACCAGACAGCGATTTTACTTGATCGGAAGCGATCGGAACAAGCGGTTCTTCCGGGTCTTGAAAATCGACCGATCGGAGCCCGACGATTTGAATATCAGCGAAGACCCCGTCGTGTACTCGCCGCAGGAGATCAAGAGTCTGCTTCAGCGAATCGCCGAGGGCAATCGCGCCACCGGAGGCCTTACTTTTGTGGCCAAGGTTTATGGGATCGCCGGTTGCATTAAGTTTCTGGAATCGTATTACTTGATTTTGGTCACCAAGCGTCGCCAAATAGGAAGTATATGTGGTCATGCGATTTATAGCATTGATGAGAGCCAGTTGATTACTATTCCGCACGTCTCGATTCAAACCGATATTGCTCATTCTAAGACCGAGTTGCGGTACAAGAAGCTTCTATCCAGTGTTGATTTGACCAAAGATTTTTTCTATAGTTATACGTATCCTATAATGCAGAGCTTGCAAAAAAATGTGTTATCAATGGGTGAAGAAAGGATGCCATATGATAATATATTTGTATGGAATGCCTATCTAACACAAGCTATTCGATCAAGGTGCAATAACACAATCTGGACAATAGCATTAGTGCATGGCCATTTTAAGCAGATTAGGCTATCAATCTTTGGTAGGGACTTCAGTGTTTCTCTGGTCTCTAGACGCTCTCGGCATTTTGCAGGAACACGGTATTTACTTGAAAAGGGGAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006996 GO:0007010 GO:0007033 GO:0007272 GO:0007275 GO:0007399 GO:0007610 GO:0007626 GO:0008150 GO:0008152 GO:0008366 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009826 GO:0009832 GO:0009987 GO:0010008 GO:0010720 GO:0010927 GO:0010975 GO:0010976 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0031090 GO:0031344 GO:0031346 GO:0031410 GO:0031641 GO:0031642 GO:0031644 GO:0031645 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0032288 GO:0032501 GO:0032502 GO:0032989 GO:0034593 GO:0034595 GO:0034596 GO:0036092 GO:0040007 GO:0042546 GO:0042552 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043473 GO:0043812 GO:0043813 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048646 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051241 GO:0051960 GO:0051961 GO:0051962 GO:0052744 GO:0052866 GO:0060284 GO:0060560 GO:0065007 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:0120035 GO:1901576 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syja_N

Protein Analysis

279

Amino Acids

32.13

Weight (kDa)

9.52

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 111 - 272 3.7e-33 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 5 cut(s) 54, 172, 251, 461, 508
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 2 cut(s) 321, 718
AcuI CTGAAG 2 cut(s) 257, 745
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 245, 512
AfiI CCNNNNNNNGG 1 cut(s) 507
AgsI TTSAA 4 cut(s) 190, 220, 476, 821
AjiI CACGTC 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 121, 520, 585, 668
AluI AGCT 4 cut(s) 121, 520, 585, 668
Alw26I GTCTC 3 cut(s) 122, 472, 781
AlwI GGATC 1 cut(s) 344
AoxI GGCC 3 cut(s) 307, 321, 718
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 376, 623
BalI TGGCCA 2 cut(s) 323, 720
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 663, 697
BciVI GTATCC 1 cut(s) 579
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 122, 472, 781
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 1 cut(s) 556
BfuI GTATCC 1 cut(s) 579
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 2 cut(s) 122, 781
BsaJI CCNNGG 2 cut(s) 285, 324
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 4 cut(s) 80, 86, 110, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 445, 528
BseDI CCNNGG 2 cut(s) 285, 324
BseGI GGATG 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 445, 528
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 3 cut(s) 163, 199, 203
BshFI GGCC 3 cut(s) 309, 323, 720
BsiEI CGRYCG 3 cut(s) 163, 199, 203
BsiSI CCGG 3 cut(s) 181, 303, 342
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 3 cut(s) 122, 472, 781
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 3 cut(s) 309, 323, 720
Bso31I GGTCTC 2 cut(s) 122, 781
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 6 cut(s) 150, 160, 200, 258, 336, 674
BspACI CCGC 5 cut(s) 54, 172, 251, 461, 508
BspANI GGCC 3 cut(s) 309, 323, 720
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 344
BspTNI GGTCTC 2 cut(s) 122, 781
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 445, 528
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 285, 324
BssMI GATC 6 cut(s) 150, 160, 200, 258, 336, 674
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 810
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 1 cut(s) 495
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 627
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 6 cut(s) 153, 163, 203, 261, 339, 677
BstMAI GTCTC 3 cut(s) 122, 472, 781
BstMBI GATC 6 cut(s) 150, 160, 200, 258, 336, 674
BstMCI CGRYCG 3 cut(s) 163, 199, 203
BstMWI GCNNNNNNNGC 2 cut(s) 586, 736
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 556
BstSNI TACGTA 1 cut(s) 567
BstUI CGCG 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 237
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 3 cut(s) 309, 323, 720
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 535, 769
Cac8I GCNNGC 1 cut(s) 587
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 3 cut(s) 92, 380, 792
Csp6I GTAC 2 cut(s) 244, 511
CviAII CATG 2 cut(s) 419, 716
CviQI GTAC 2 cut(s) 244, 511
DdeI CTNAG 1 cut(s) 495
DpnI GATC 6 cut(s) 152, 162, 202, 260, 338, 676
DpnII GATC 6 cut(s) 150, 160, 200, 258, 336, 674
EaeI YGGCCR 2 cut(s) 321, 718
EciI GGCGGA 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 2 cut(s) 122, 781
Eco57I CTGAAG 2 cut(s) 257, 745
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 2 cut(s) 422, 719
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 770
FatI CATG 2 cut(s) 418, 715
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 634
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 3 cut(s) 309, 323, 720
HapII CCGG 3 cut(s) 181, 303, 342
HgaI GACGC 3 cut(s) 92, 380, 792
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 422, 719
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 4 cut(s) 265, 279, 362, 472
HpaII CCGG 3 cut(s) 181, 303, 342
HphI GGTGA 2 cut(s) 376, 623
Hpy166II GTNNAC 2 cut(s) 64, 244
Hpy188I TCNGA 3 cut(s) 155, 165, 205
Hpy188III TCNNGA 6 cut(s) 187, 262, 359, 469, 697, 780
Hpy8I GTNNAC 2 cut(s) 64, 244
Hpy99I CGWCG 4 cut(s) 86, 215, 242, 396
HpyCH4III ACNGT 1 cut(s) 810
HpyCH4IV ACGT 3 cut(s) 42, 465, 566
HpyCH4V TGCA 6 cut(s) 348, 580, 589, 684, 715, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 586, 736
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 3 cut(s) 42, 465, 566
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 422, 719
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 6 cut(s) 150, 160, 200, 258, 336, 674
LmnI GCTCC 1 cut(s) 205
LweI GCATC 1 cut(s) 612
MaeI CTAG 1 cut(s) 780
MaeII ACGT 3 cut(s) 42, 465, 566
MaeIII GTNAC 1 cut(s) 382
MalI GATC 6 cut(s) 152, 162, 202, 260, 338, 676
MboI GATC 6 cut(s) 150, 160, 200, 258, 336, 674
MboII GAAGA 3 cut(s) 169, 242, 626
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 2 cut(s) 323, 720
MluNI TGGCCA 2 cut(s) 323, 720
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 61, 79, 116, 280, 299
Mox20I TGGCCA 2 cut(s) 323, 720
MscI TGGCCA 2 cut(s) 323, 720
MseI TTAA 3 cut(s) 117, 351, 726
Msp20I TGGCCA 2 cut(s) 323, 720
MspI CCGG 3 cut(s) 181, 303, 342
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 655
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 586, 736
NciI CCSGG 1 cut(s) 182
NdeI CATATG 1 cut(s) 628
NdeII GATC 6 cut(s) 150, 160, 200, 258, 336, 674
NlaIII CATG 2 cut(s) 422, 719
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 2 cut(s) 310, 769
NmuCI GTSAC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 309
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 3 cut(s) 279, 362, 472
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 252
Ple19I CGATCG 2 cut(s) 163, 203
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 567
PspEI GGTNACC 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 207
PsyI GACNNNGTC 1 cut(s) 236
PvuI CGATCG 2 cut(s) 163, 203
RsaI GTAC 2 cut(s) 245, 512
RsaNI GTAC 2 cut(s) 244, 511
SaqAI TTAA 3 cut(s) 117, 351, 726
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 6 cut(s) 150, 160, 200, 258, 336, 674
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 1 cut(s) 556
SnaBI TACGTA 1 cut(s) 567
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 5 cut(s) 54, 172, 251, 461, 508
SspMI CTAG 1 cut(s) 780
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 810
TaiI ACGT 3 cut(s) 45, 468, 569
TaqI TCGA 6 cut(s) 20, 81, 108, 195, 470, 673
TaqII GACCGA 2 cut(s) 213, 515
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 279, 362, 472
Tru1I TTAA 3 cut(s) 117, 351, 726
Tru9I TTAA 3 cut(s) 117, 351, 726
TscAI CASTG 2 cut(s) 535, 769
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 535, 769
Tth111I GACNNNGTC 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 779
XspI CTAG 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.