Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005115

Physical Location & Seq

Genomic Coordinates Forward (+)

37376242 .. 37378706

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCCATCTCCTTCTCCTCCTCCTCCTCCTCTCAACTCTTCTTCCAAAAACCTTTCTTCTCTCTGCAGAGCAATTTTCAGAAGCAACGAGTTTCTGGGTTTTGGAGAAGGCCACAGGCTTTGAGGAGGCTTGTGATCGAATCCGGCGCAAAGAAGATATCTTTTGGTACAGAATGCAGGGATGCCTTACAAACTGGGATAGATAAACTTGCTGATGCTGTTTCCCTTACCTTAGGACCTAAAGGACGTAATGTTATTCTTTCTGAGTCGGAAAAACTGAAAGTGATTAATGATGGTGTAACAATTGTTCAGTCCATAGAGCTATCAGATACAATTGAGAACGTGGGAGCAATGCTAATCCAAGAGGTTGCAAAGAAAATGAATAATTTGGCAGGTGATGGTACCACCACTGCAGTCATTTTGACAAGAGAAATGATCAAAGGTGGACTTTTAGCAGTAGCTTTCGGAGCTAACCCAATTTCTCTGAAGAAGGGAATGGATAGGACTGTAAACGAATTGGTGAAGATCTTGAAGGAGAAGAGTCTTCCTGTAAAAGGAAGGAATGACATTAAAGCTTTAGCTTCAATTTCTGCTGGAAATGACGAGTTCATTGGTAATTTGATTGCTGAAGCTATAGAAAAGATTGGCCCTGATGGATCGATCTCAATTGAGTCATCCTCGTCATTTGAAACGTCTGTTTTAGTTGAAGAAGGGCTGAAGTTTGACAAGGGATACATGTCCTCCCACTTCATTACAAACCAGGAAAAATCTCTTGTAGAGTTTGACAAAGCTAAGGTCCTAGTAACTGATCACAAGATTTCAACTGTTAGAGAAATTGTTCCTTTATTGGAAAAGACAACCCAACTGAGTATCCCGCTGCTAATCATTGCAGAGGATATCTCAAAGCAAGTACTGGAAACACTAGTGGTGAACAAAAAGCAGGGTTTACTTAAAGTCGCTGTTGTTAAATGTCCTGGATTTGCAGAGGGGAAAAAGGCTATTTTGCAAGATATTGCACTTATGACAGGTGCTGATTTTCTCTCTGGAGATTTTGGTTTGACCCTTGAGAGTGCAACATCAGATCGATCATGGAATTGCAAGAAAAGTGAAAATAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044424 GO:0044444 GO:0044464 GO:0051082 GO:0061077 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

374

Amino Acids

40.5

Weight (kDa)

8.74

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	70 - 349	1.6e-36	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18820 AT5G18820 AT5G18820
fragaria_vesca	FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390 FvH4_3g12390
malus_domestica	MD08G1228200.v1.1 MD15G1422100.v1.1
prunus_persica	Prupe.4G112900_v2.0.a1 Prupe.4G112900_v2.0.a1
pyrus_communis	pycom15g37410
rosa_chinensis	RchiOBHm_Chr5g0020251
rosa_laevigata	RLG00000032512
rosa_multiflora	Rmu_sc0002087.1_g000009
rosa_roxburghii	Rroxscaffold_1G00057960
rosa_rugosa	Rorug05G0057800 Rorug05G0057900
rosa_samantha	Rh5AG148400 Rh5BG147900 Rh5CG159300 Rh5DG147000
rosa_wichuraiana	Rw5G013130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	1 cut(s)	875
AclWI	GGATC	1 cut(s)	664
AcuI	CTGAAG	3 cut(s)	506, 648, 737
AfaI	GTAC	3 cut(s)	169, 403, 912
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	532, 585, 689, 707, 822
AhlI	ACTAGT	1 cut(s)	922
AjnI	CCWGG	2 cut(s)	759, 973
AluBI	AGCT	7 cut(s)	322, 461, 470, 575, 581, 632, 791
AluI	AGCT	7 cut(s)	322, 461, 470, 575, 581, 632, 791
AlwI	GGATC	1 cut(s)	664
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	110, 646
ApeKI	GCWGC	1 cut(s)	877
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	837
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	236, 647, 796
AsuHPI	GGTGA	3 cut(s)	407, 532, 940
AvaII	GGWCC	2 cut(s)	236, 796
AxyI	CCTNAGG	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	4 cut(s)	14, 287, 392, 647
BciT130I	CCWGG	2 cut(s)	761, 975
BciVI	GTATCC	2 cut(s)	725, 881
BclI	TGATCA	2 cut(s)	435, 808
BcuI	ACTAGT	1 cut(s)	922
BfaI	CTAG	2 cut(s)	800, 923
BfmI	CTRYAG	3 cut(s)	65, 411, 633
BfuAI	ACCTGC	1 cut(s)	383
BfuI	GTATCC	2 cut(s)	725, 881
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	1 cut(s)	878
BlsI	GCNGC	1 cut(s)	879
BmcAI	AGTACT	1 cut(s)	912
Bme1390I	CCNGG	2 cut(s)	761, 975
Bme18I	GGWCC	2 cut(s)	236, 796
BmgT120I	GGNCC	3 cut(s)	236, 647, 796
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	761, 975
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	172, 205
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	536
BplI	GAGNNNNNCTC	4 cut(s)	662, 694, 884, 916
BpmI	CTGGAG	1 cut(s)	1065
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	1085
Bsa29I	ATCGAT	2 cut(s)	659, 1084
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	199, 918
Bse21I	CCTNAGG	1 cut(s)	232
Bse3DI	GCAATG	2 cut(s)	357, 885
BseBI	CCWGG	2 cut(s)	761, 975
BseCI	ATCGAT	2 cut(s)	659, 1084
BseGI	GGATG	2 cut(s)	187, 674
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	2 cut(s)	357, 885
BseMII	CTCAG	2 cut(s)	255, 857
BseNI	ACTGG	2 cut(s)	199, 918
BseRI	GAGGAG	6 cut(s)	7, 10, 13, 16, 19, 139
BseXI	GCAGC	1 cut(s)	864
BshFI	GGCC	2 cut(s)	112, 648
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	2 cut(s)	659, 1084
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	112, 648
Bsp143I	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
BspACI	CCGC	1 cut(s)	875
BspANI	GGCC	2 cut(s)	112, 648
BspCNI	CTCAG	2 cut(s)	256, 858
BspDI	ATCGAT	2 cut(s)	659, 1084
BspLI	GGNNCC	1 cut(s)	403
BspMAI	CTGCAG	2 cut(s)	69, 415
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	401
BsrDI	GCAATG	2 cut(s)	357, 885
BsrI	ACTGG	2 cut(s)	199, 918
BssMI	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
Bst2UI	CCWGG	2 cut(s)	761, 975
Bst4CI	ACNGT	2 cut(s)	508, 826
Bst6I	CTCTTC	2 cut(s)	44, 533
BstDEI	CTNAG	4 cut(s)	232, 264, 792, 866
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	187, 674
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	8 cut(s)	138, 438, 528, 659, 663, 811, 1084, 1088
BstMBI	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	2 cut(s)	761, 975
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	2 cut(s)	759, 973
BstSFI	CTRYAG	3 cut(s)	65, 411, 633
BstV1I	GCAGC	1 cut(s)	864
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
Bsu15I	ATCGAT	2 cut(s)	659, 1084
Bsu36I	CCTNAGG	1 cut(s)	232
BsuI	GTATCC	2 cut(s)	725, 881
BsuRI	GGCC	2 cut(s)	112, 648
BsuTUI	ATCGAT	2 cut(s)	659, 1084
BtsCI	GGATG	2 cut(s)	187, 674
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	1031
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	236, 647, 796
ClaI	ATCGAT	2 cut(s)	659, 1084
Csp6I	GTAC	3 cut(s)	168, 402, 911
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	2 cut(s)	736, 1089
CviQI	GTAC	3 cut(s)	168, 402, 911
DdeI	CTNAG	4 cut(s)	232, 264, 792, 866
DpnI	GATC	8 cut(s)	137, 437, 527, 658, 662, 810, 1083, 1087
DpnII	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
Eam1104I	CTCTTC	2 cut(s)	44, 533
EarI	CTCTTC	2 cut(s)	44, 533
Eco32I	GATATC	2 cut(s)	159, 898
Eco47I	GGWCC	2 cut(s)	236, 796
Eco57I	CTGAAG	3 cut(s)	506, 648, 737
Eco81I	CCTNAGG	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	236, 796
EcoRII	CCWGG	2 cut(s)	759, 973
EcoRV	GATATC	2 cut(s)	159, 898
FaeI	CATG	2 cut(s)	739, 1092
FaiI	YATR	5 cut(s)	317, 635, 737, 1022, 1090
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	2 cut(s)	735, 1088
FauI	CCCGC	1 cut(s)	882
FbaI	TGATCA	2 cut(s)	435, 808
Fnu4HI	GCNGC	1 cut(s)	878
FokI	GGATG	2 cut(s)	194, 661
Fsp4HI	GCNGC	1 cut(s)	878
FspBI	CTAG	2 cut(s)	800, 923
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	878
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	112, 648
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	739, 1092
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	4 cut(s)	140, 266, 541, 671
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	3 cut(s)	407, 532, 940
Hpy166II	GTNNAC	4 cut(s)	446, 511, 931, 947
Hpy188I	TCNGA	7 cut(s)	81, 265, 271, 328, 467, 486, 1081
Hpy188III	TCNNGA	2 cut(s)	529, 1044
Hpy8I	GTNNAC	4 cut(s)	446, 511, 931, 947
HpyAV	CCTTC	6 cut(s)	22, 102, 484, 526, 552, 704
HpyCH4III	ACNGT	2 cut(s)	508, 826
HpyCH4IV	ACGT	3 cut(s)	247, 342, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	4 cut(s)	232, 264, 792, 866
HpySE526I	ACGT	3 cut(s)	247, 342, 692
Hsp92II	CATG	2 cut(s)	739, 1092
HspAI	GCGC	1 cut(s)	147
KpnI	GGTACC	1 cut(s)	405
Ksp22I	TGATCA	2 cut(s)	435, 808
Kzo9I	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
LmnI	GCTCC	2 cut(s)	347, 467
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	2 cut(s)	172, 205
MaeI	CTAG	2 cut(s)	800, 923
MaeII	ACGT	3 cut(s)	247, 342, 692
MaeIII	GTNAC	2 cut(s)	298, 802
MalI	GATC	8 cut(s)	137, 437, 527, 658, 662, 810, 1083, 1087
MboI	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
MboII	GAAGA	9 cut(s)	31, 34, 49, 166, 499, 535, 536, 550, 719
MfeI	CAATTG	3 cut(s)	303, 333, 666
MflI	RGATCY	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	275, 550, 680
MmeI	TCCRAC	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	4 cut(s)	288, 570, 951, 966
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	761, 975
MunI	CAATTG	3 cut(s)	303, 333, 666
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	761, 975
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
NlaIII	CATG	2 cut(s)	739, 1092
NlaIV	GGNNCC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	739
PaqCI	CACCTGC	1 cut(s)	383
PciI	ACATGT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	837
PfeI	GAWTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	973
PkrI	GCNGC	1 cut(s)	879
PleI	GAGTC	3 cut(s)	274, 549, 679
PpsI	GAGTC	3 cut(s)	274, 549, 679
PpuMI	RGGWCCY	2 cut(s)	236, 796
PscI	ACATGT	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	288
Psp5II	RGGWCCY	2 cut(s)	236, 796
Psp6I	CCWGG	2 cut(s)	759, 973
PspGI	CCWGG	2 cut(s)	759, 973
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	236, 647, 796
PspPPI	RGGWCCY	2 cut(s)	236, 796
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PstI	CTGCAG	2 cut(s)	69, 415
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	3 cut(s)	169, 403, 912
RsaNI	GTAC	3 cut(s)	168, 402, 911
SaqAI	TTAA	4 cut(s)	288, 570, 951, 966
SatI	GCNGC	1 cut(s)	878
Sau3AI	GATC	8 cut(s)	135, 435, 525, 656, 660, 808, 1081, 1085
Sau96I	GGNCC	3 cut(s)	236, 647, 796
ScaI	AGTACT	1 cut(s)	912
SchI	GAGTC	3 cut(s)	275, 550, 680
ScrFI	CCNGG	2 cut(s)	761, 975
SfaNI	GCATC	2 cut(s)	172, 205
SfcI	CTRYAG	3 cut(s)	65, 411, 633
SinI	GGWCC	2 cut(s)	236, 796
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
SpeI	ACTAGT	1 cut(s)	922
SsiI	CCGC	1 cut(s)	875
SspMI	CTAG	2 cut(s)	800, 923
StyD4I	CCNGG	2 cut(s)	759, 973
TaaI	ACNGT	2 cut(s)	508, 826
TaiI	ACGT	3 cut(s)	250, 345, 695
TaqI	TCGA	3 cut(s)	138, 659, 1084
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	4 cut(s)	288, 570, 951, 966
Tru9I	TTAA	4 cut(s)	288, 570, 951, 966
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	877
TspDTI	ATGAA	3 cut(s)	395, 598, 739
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	236, 796
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	552
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	2 cut(s)	800, 923
ZrmI	AGTACT	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.