pycom16g00070

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
40292 .. 41554
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00070.1

Sequence Viewer

Length: 1263 bp
ATGTCGTCGCAATATTCAAACAGGAATGGGAATGGCGGCAGCCATACGTCTCATAGCCACCTTTTCCGTGCACGCATGAAAAGGGATGCCAAAAGGGTTGCTAGCCTCACGAGGCGCCTCCTCAACGACTCAAACTCAGAGTTAGAGTCGTTGGATTTTGGGTCGGGGGTGGTGTCGGGTATGGAGCAAGGGAGCGGAGAATACTTCGTGAGGATAGGAGTGGGGAGCCCGCCACGAAACCAATACATGGTTATTGACTCCGGCAGTGACATCGTGTGGGTTCAGTGCCAACCTTGTACCGAGTGTTACCACCAGTCCGACCCTATCTTTGACCCCGCCCGCTCTGCCTCCTATTCTGGCGTCTCCTGCGACTCCTCCCTCTGCGGCCGCCTCCAGAACCCCGGTTGCCACTCCGGTCGATGCCGCTACGAGGCCTCCTACGGCGACGGATCGTACACCCAGGGCACGCTTGCCCTGGAAACTCTTACCTTGGGCCGCGCCCTCATCCGAAACGTCGCCATCGGCTGCGGCCACATGAATCGCGGCATGTTTGTGGGAGCCGCTGGTCTCTTGGGCCTTGGAGGCGGGCCCATGTCTTTTGTCGGTCAGCTCGCCGGCCTGACCGGAGGTGCCTTCACTTACTGTTTAGTCAGCCGTGGCGGCCGCTCTAGTACTACAAGTACTAACGTAGCCGGCGGAGGAGGAGGAGGGTCCCTGGAGTTCGGTCGTGGGGCGATGCCCGTGGGTGCTTCGTGGGTCCCGCTGATCCGGAACCCGCAGGCCCCGAGTTTCTATTTTGTGGGGCTGGCGGGTCTAGGAGTTGGAGGGATGCGGGTACCCATTTCCGGAGATGTATTCGGCCAAACCGAGATGGGGTACGGAGGGGTTGTGATGGACACGGGTACCGCCGTGACGAGGTTCCCTACGTTGGCTTACGAGGCCTTCCGCGATACCTTTCTTCAGCAGACGGCCAGCCTCCCTCGGCTGTCGTCGGGAGTGTCCATTTTTGACACATGCTATGACCTGAACGGCTTCGTGTCGGTTAGGGTGCCGACCGTGTCGTTTTATTTTTCGGGTGGGCCCATCCTGACGCTTCCGGCGAGCAATTTTCTGATTCCGGTGGACGACAAGGGCACTTTTTGCTTTGCATTTGCTCCTTCGCCCTCCGGACTTTCCATAATAGGCAACATCCAGCAAGAGGGCATCCAAATTTCATTTGATGGAGCCAATGGTTTTGTAGGTTTTGGACCTAATGTCTGCTAA

Protein Analysis

421

Amino Acids

43.97

Weight (kDa)

6.97

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 67 - 119 3.1e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 68 - 223 8.1e-48 Xylanase inhibitor N-terminal
Asp PF00026 144 - 416 9.4e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 265 - 416 3e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20015
fragaria_vesca FvH4_4g37260
malus_domestica MD00G1127200.v1.1 MD13G1002100.v1.1
prunus_persica Prupe.1G350500_v2.0.a1
pyrus_communis pycom13g00180 pycom16g00070
rosa_chinensis RchiOBHm_Chr4g0447081
rosa_laevigata RLG00000005607
rosa_roxburghii Rroxscaffold_5G00387390
rosa_rugosa Rorug04G0377800
rosa_samantha Rh4AG439100 Rh4BG448100 Rh4CG465200 Rh4DG446600
rosa_wichuraiana Rw4G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 835, 902
AccB1I GGYRCC 5 cut(s) 114, 629, 835, 902, 1048
AccB7I CCANNNNNTGG 1 cut(s) 247
AccBSI CCGCTC 3 cut(s) 195, 342, 666
AccII CGCG 3 cut(s) 498, 543, 948
AccIII TCCGGA 3 cut(s) 768, 845, 1166
AclWI GGATC 2 cut(s) 457, 760
AcoI YGGCCR 5 cut(s) 385, 529, 661, 859, 969
AcsI RAATTY 1 cut(s) 1209
AcuI CTGAAG 1 cut(s) 944
AcyI GRCGYC 2 cut(s) 115, 360
AfaI GTAC 7 cut(s) 298, 455, 673, 682, 837, 878, 904
AfiI CCNNNNNNNGG 7 cut(s) 247, 430, 845, 873, 915, 928, 1198
AgsI TTSAA 1 cut(s) 18
AhdI GACNNNNNGTC 1 cut(s) 1253
AjnI CCWGG 3 cut(s) 459, 474, 714
AluBI AGCT 1 cut(s) 610
AluI AGCT 1 cut(s) 610
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 54, 367, 572
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 2 cut(s) 457, 760
Ama87I CYCGRG 1 cut(s) 784
Aor13HI TCCGGA 3 cut(s) 768, 845, 1166
ApaI GGGCCC 2 cut(s) 591, 1083
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 39, 525
ApoI RAATTY 1 cut(s) 1209
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 1 cut(s) 1031
Asp718I GGTACC 2 cut(s) 835, 902
AspLEI GCGC 2 cut(s) 117, 500
AsuC2I CCSGG 1 cut(s) 402
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 3 cut(s) 711, 757, 1247
BaeGI GKGCMC 5 cut(s) 73, 467, 591, 1083, 1136
BaeI ACNNNNGTAYC 4 cut(s) 886, 894, 919, 927
BanI GGYRCC 5 cut(s) 114, 629, 835, 902, 1048
BanII GRGCYC 3 cut(s) 230, 591, 1083
BauI CACGAG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 51, 512
BccI CCATC 5 cut(s) 527, 865, 886, 1091, 1214
BceAI ACGGC 5 cut(s) 457, 639, 893, 984, 1045
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 3 cut(s) 461, 476, 716
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 3 cut(s) 54, 367, 572
BfaI CTAG 3 cut(s) 102, 669, 815
BfoI RGCGCY 1 cut(s) 118
BglI GCCNNNNNGGC 2 cut(s) 582, 660
BmcAI AGTACT 2 cut(s) 673, 682
Bme1390I CCNGG 4 cut(s) 402, 461, 476, 716
Bme18I GGWCC 3 cut(s) 711, 757, 1247
BmeRI GACNNNNNGTC 1 cut(s) 1253
BmeT110I CYCGRG 1 cut(s) 784
BmrFI CCNGG 4 cut(s) 402, 461, 476, 716
BmsI GCATC 5 cut(s) 76, 410, 726, 819, 1212
BmtI GCTAGC 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 377, 737
BpuMI CCSGG 1 cut(s) 402
BsaHI GRCGYC 2 cut(s) 115, 360
BsaI GGTCTC 1 cut(s) 572
BsaWI WCCGGW 6 cut(s) 413, 623, 768, 845, 1117, 1166
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 873, 903
Bsc4I CCNNNNNNNGG 7 cut(s) 247, 430, 845, 873, 915, 928, 1198
Bse118I RCCGGY 2 cut(s) 614, 692
Bse1I ACTGG 1 cut(s) 313
BseAI TCCGGA 3 cut(s) 768, 845, 1166
BseBI CCWGG 3 cut(s) 461, 476, 716
BseGI GGATG 6 cut(s) 91, 504, 834, 1083, 1188, 1203
BseLI CCNNNNNNNGG 7 cut(s) 247, 430, 845, 873, 915, 928, 1198
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 5 cut(s) 110, 364, 714, 717, 720
BseSI GKGCMC 5 cut(s) 73, 467, 591, 1083, 1136
BseX3I CGGCCG 2 cut(s) 385, 661
BseXI GCAGC 2 cut(s) 51, 512
Bsh1236I CGCG 3 cut(s) 498, 543, 948
Bsh1285I CGRYCG 5 cut(s) 388, 418, 664, 727, 1056
BshNI GGYRCC 5 cut(s) 114, 629, 835, 902, 1048
BsiEI CGRYCG 5 cut(s) 388, 418, 664, 727, 1056
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 784
BslFI GGGAC 2 cut(s) 697, 743
BslI CCNNNNNNNGG 7 cut(s) 247, 430, 845, 873, 915, 928, 1198
BsmAI GTCTC 3 cut(s) 54, 367, 572
BsmBI CGTCTC 2 cut(s) 54, 367
BsmFI GGGAC 2 cut(s) 697, 743
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 784
Bsp120I GGGCCC 2 cut(s) 587, 1079
Bsp1286I GDGCHC 6 cut(s) 73, 230, 467, 591, 1083, 1136
Bsp13I TCCGGA 3 cut(s) 768, 845, 1166
Bsp143I GATC 2 cut(s) 449, 765
BspCNI CTCAG 1 cut(s) 149
BspEI TCCGGA 3 cut(s) 768, 845, 1166
BspFNI CGCG 3 cut(s) 498, 543, 948
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 457, 760
BspT107I GGYRCC 5 cut(s) 114, 629, 835, 902, 1048
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 3 cut(s) 195, 342, 666
BsrFI RCCGGY 2 cut(s) 614, 692
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 2 cut(s) 614, 692
BssMI GATC 2 cut(s) 449, 765
BssNI GRCGYC 2 cut(s) 115, 360
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 489, 577
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 461, 476, 716
Bst4CI ACNGT 2 cut(s) 644, 1057
BstACI GRCGYC 2 cut(s) 115, 360
BstAPI GCANNNNNTGC 1 cut(s) 1140
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 2 cut(s) 655, 741
BstF5I GGATG 6 cut(s) 91, 504, 834, 1083, 1188, 1203
BstFNI CGCG 3 cut(s) 498, 543, 948
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 500
BstKTI GATC 2 cut(s) 452, 768
BstMAI GTCTC 3 cut(s) 54, 367, 572
BstMBI GATC 2 cut(s) 449, 765
BstMCI CGRYCG 5 cut(s) 388, 418, 664, 727, 1056
BstMWI GCNNNNNNNGC 6 cut(s) 344, 366, 582, 660, 938, 1140
BstNI CCWGG 3 cut(s) 461, 476, 716
BstNSI RCATGY 2 cut(s) 550, 1017
BstSCI CCNGG 4 cut(s) 400, 459, 474, 714
BstSLI GKGCMC 5 cut(s) 73, 467, 591, 1083, 1136
BstUI CGCG 3 cut(s) 498, 543, 948
BstV1I GCAGC 2 cut(s) 51, 512
BstZI CGGCCG 2 cut(s) 385, 661
BtgI CCRYGG 2 cut(s) 655, 741
BtgZI GCGATG 1 cut(s) 749
BtsCI GGATG 6 cut(s) 91, 504, 834, 1083, 1188, 1203
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 290
CciNI GCGGCCGC 2 cut(s) 385, 661
CfoI GCGC 2 cut(s) 117, 500
Cfr10I RCCGGY 2 cut(s) 614, 692
CseI GACGC 2 cut(s) 349, 1099
Csp6I GTAC 7 cut(s) 297, 454, 672, 681, 836, 877, 903
CviAII CATG 6 cut(s) 76, 247, 535, 547, 592, 1014
CviQI GTAC 7 cut(s) 297, 454, 672, 681, 836, 877, 903
DdeI CTNAG 1 cut(s) 136
DinI GGCGCC 1 cut(s) 116
DpnI GATC 2 cut(s) 451, 767
DpnII GATC 2 cut(s) 449, 765
DriI GACNNNNNGTC 1 cut(s) 1253
EaeI YGGCCR 5 cut(s) 385, 529, 661, 859, 969
EagI CGGCCG 2 cut(s) 385, 661
Eam1105I GACNNNNNGTC 1 cut(s) 1253
EciI GGCGGA 1 cut(s) 711
EclXI CGGCCG 2 cut(s) 385, 661
Eco130I CCWWGG 2 cut(s) 489, 577
Eco147I AGGCCT 2 cut(s) 434, 941
Eco24I GRGCYC 3 cut(s) 230, 591, 1083
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 3 cut(s) 711, 757, 1247
Eco52I CGGCCG 2 cut(s) 385, 661
Eco57I CTGAAG 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 784
EcoO109I RGGNCCY 3 cut(s) 711, 757, 781
EcoRII CCWGG 3 cut(s) 459, 474, 714
EcoT14I CCWWGG 2 cut(s) 489, 577
EcoT38I GRGCYC 3 cut(s) 230, 591, 1083
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 489, 577
Esp3I CGTCTC 2 cut(s) 54, 367
FaeI CATG 6 cut(s) 79, 250, 538, 550, 595, 1017
FaqI GGGAC 2 cut(s) 697, 743
FatI CATG 6 cut(s) 75, 246, 534, 546, 591, 1013
FauI CCCGC 8 cut(s) 237, 343, 347, 578, 768, 783, 802, 825
FokI GGATG 6 cut(s) 98, 491, 841, 1070, 1175, 1190
FriOI GRGCYC 3 cut(s) 230, 591, 1083
FspBI CTAG 3 cut(s) 102, 669, 815
GlaI GCGC 2 cut(s) 116, 499
GsuI CTGGAG 2 cut(s) 377, 737
HaeII RGCGCY 1 cut(s) 118
HgaI GACGC 2 cut(s) 349, 1099
HhaI GCGC 2 cut(s) 117, 500
Hin1I GRCGYC 2 cut(s) 115, 360
Hin1II CATG 6 cut(s) 79, 250, 538, 550, 595, 1017
Hin6I GCGC 2 cut(s) 115, 498
HinP1I GCGC 2 cut(s) 115, 498
HinfI GANTC 6 cut(s) 128, 146, 257, 371, 538, 1114
Hpy166II GTNNAC 3 cut(s) 71, 456, 1123
Hpy188I TCNGA 4 cut(s) 139, 319, 509, 1113
Hpy188III TCNNGA 8 cut(s) 109, 208, 394, 769, 846, 993, 1087, 1167
Hpy8I GTNNAC 3 cut(s) 71, 456, 1123
Hpy99I CGWCG 4 cut(s) 10, 449, 518, 994
HpyAV CCTTC 3 cut(s) 643, 952, 1167
HpyCH4III ACNGT 2 cut(s) 644, 1057
HpyCH4IV ACGT 4 cut(s) 47, 513, 687, 926
HpyCH4V TGCA 2 cut(s) 71, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 344, 366, 582, 660, 938, 1140
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 4 cut(s) 47, 513, 687, 926
Hsp92I GRCGYC 2 cut(s) 115, 360
Hsp92II CATG 6 cut(s) 79, 250, 538, 550, 595, 1017
HspAI GCGC 2 cut(s) 115, 498
KasI GGCGCC 1 cut(s) 114
KflI GGGWCCC 2 cut(s) 711, 757
Kpn2I TCCGGA 3 cut(s) 768, 845, 1166
KpnI GGTACC 2 cut(s) 839, 906
KroI GCCGGC 2 cut(s) 614, 692
KroNI GCCGGC 2 cut(s) 616, 694
Kzo9I GATC 2 cut(s) 449, 765
LmnI GCTCC 6 cut(s) 184, 192, 225, 557, 1159, 1223
Lsp1109I GCAGC 2 cut(s) 51, 512
LweI GCATC 5 cut(s) 76, 410, 726, 819, 1212
MaeI CTAG 3 cut(s) 102, 669, 815
MaeII ACGT 4 cut(s) 47, 513, 687, 926
MaeIII GTNAC 3 cut(s) 266, 305, 910
MalI GATC 2 cut(s) 451, 767
MbiI CCGCTC 3 cut(s) 195, 342, 666
MboI GATC 2 cut(s) 449, 765
MboII GAAGA 1 cut(s) 950
MhlI GDGCHC 6 cut(s) 73, 230, 467, 591, 1083, 1136
MluCI AATT 2 cut(s) 1105, 1209
Mly113I GGCGCC 1 cut(s) 115
MlyI GAGTC 4 cut(s) 122, 155, 251, 365
MmeI TCCRAC 3 cut(s) 132, 342, 802
MroI TCCGGA 3 cut(s) 768, 845, 1166
MroNI GCCGGC 2 cut(s) 614, 692
MroXI GAANNNNTTC 1 cut(s) 1031
MslI CAYNNNNRTG 1 cut(s) 551
MspA1I CMGCKG 2 cut(s) 563, 763
MspR9I CCNGG 4 cut(s) 402, 461, 476, 716
MvaI CCWGG 3 cut(s) 461, 476, 716
MvnI CGCG 3 cut(s) 498, 543, 948
MwoI GCNNNNNNNGC 6 cut(s) 344, 366, 582, 660, 938, 1140
NaeI GCCGGC 2 cut(s) 616, 694
NarI GGCGCC 1 cut(s) 115
NciI CCSGG 1 cut(s) 402
NdeII GATC 2 cut(s) 449, 765
NgoMIV GCCGGC 2 cut(s) 614, 692
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 6 cut(s) 79, 250, 538, 550, 595, 1017
NmeAIII GCCGAG 1 cut(s) 961
NmuCI GTSAC 2 cut(s) 266, 910
NotI GCGGCCGC 2 cut(s) 385, 661
NspI RCATGY 2 cut(s) 550, 1017
PasI CCCWGGG 1 cut(s) 460
PceI AGGCCT 2 cut(s) 434, 941
PcsI WCGNNNNNNNCGW 2 cut(s) 864, 1097
PdiI GCCGGC 2 cut(s) 616, 694
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 2 cut(s) 538, 1114
PflFI GACNNNGTC 1 cut(s) 1057
PflMI CCANNNNNTGG 1 cut(s) 247
PleI GAGTC 4 cut(s) 122, 154, 251, 365
PluTI GGCGCC 1 cut(s) 118
PpsI GAGTC 4 cut(s) 122, 154, 251, 365
PpuMI RGGWCCY 2 cut(s) 711, 757
Psp5II RGGWCCY 2 cut(s) 711, 757
Psp6I CCWGG 3 cut(s) 459, 474, 714
PspGI CCWGG 3 cut(s) 459, 474, 714
PspOMI GGGCCC 2 cut(s) 587, 1079
PspPPI RGGWCCY 2 cut(s) 711, 757
PsyI GACNNNGTC 1 cut(s) 1057
RsaI GTAC 7 cut(s) 298, 455, 673, 682, 837, 878, 904
RsaNI GTAC 7 cut(s) 297, 454, 672, 681, 836, 877, 903
RseI CAYNNNNRTG 1 cut(s) 551
Sau3AI GATC 2 cut(s) 449, 765
ScaI AGTACT 2 cut(s) 673, 682
SchI GAGTC 4 cut(s) 122, 155, 251, 365
ScrFI CCNGG 4 cut(s) 402, 461, 476, 716
SduI GDGCHC 6 cut(s) 73, 230, 467, 591, 1083, 1136
SfaNI GCATC 5 cut(s) 76, 410, 726, 819, 1212
SfoI GGCGCC 1 cut(s) 116
SinI GGWCC 3 cut(s) 711, 757, 1247
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 2 cut(s) 1105, 1209
SseBI AGGCCT 2 cut(s) 434, 941
SspDI GGCGCC 1 cut(s) 114
SspI AATATT 1 cut(s) 14
SspMI CTAG 3 cut(s) 102, 669, 815
StuI AGGCCT 2 cut(s) 434, 941
StyD4I CCNGG 4 cut(s) 400, 459, 474, 714
StyI CCWWGG 2 cut(s) 489, 577
TaaI ACNGT 2 cut(s) 644, 1057
TaiI ACGT 4 cut(s) 50, 516, 690, 929
TaqI TCGA 1 cut(s) 418
TaqII GACCGA 2 cut(s) 593, 713
TasI AATT 2 cut(s) 1105, 1209
TatI WGTACW 2 cut(s) 671, 680
TfiI GAWTC 2 cut(s) 538, 1114
TscAI CASTG 2 cut(s) 271, 290
TseFI GTSAC 2 cut(s) 266, 910
TseI GCWGC 2 cut(s) 39, 525
Tsp45I GTSAC 2 cut(s) 266, 910
TspDTI ATGAA 3 cut(s) 92, 551, 1203
TspGWI ACGGA 3 cut(s) 56, 462, 894
TspRI CASTG 2 cut(s) 271, 290
Tth111I GACNNNGTC 1 cut(s) 1057
Van91I CCANNNNNTGG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 3 cut(s) 711, 757, 1247
XapI RAATTY 1 cut(s) 1209
XceI RCATGY 2 cut(s) 550, 1017
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 3 cut(s) 102, 669, 815
ZrmI AGTACT 2 cut(s) 673, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.