Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Reverse (-)

205318 .. 207989

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGGCTTCTCACTCTTTCTGTACTTGTAGCGGGAATTGGAAAACCTCACCCAACCCACCGGACGCCGCTCCTCATCAACACCAACTACCAAGACATGCATATTTGAGTGCGAGGGGAGCAATTAAAGGAGCAATGATACTCTGTTTTTCTAGTCCTTCACCTCCAACCTCTCACCGTTTATTTACCGAATTTTCTCACTCTTTTAAGCGTCCCCAGCTTCCTCGTCCGTGCAAGCAGCAGAAAAGACAGCCCGGTGGGTCTCCAAGAGCTTCTAGAGTTGTCGCTTACTATGGATTGAAGAAACCTCCTTATAAACTTGATGCTTTGGAGCCGTATATGAGTCAAAGAACATTGGAAGTTCACTGGGGAGGCCATCATCGAAACTATGTGGAAGGTCTGAACAAACAGCTGGAGAAGAGTGACGTACTATATGGCTACACTTTCGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCTTTACCTGAATTTAACAACGCTGCTCAGGTGTGGAATCATGACTTCTTTTGGGAGTCCATGCAACCGGGAGGAGGAGACATGCCCCAACTGGGTGTCCTCCAGCAGATAGAAAAGGATTTTGGTTCCTTTTCAAATTTCAGAGAGAAGTTTACAGAAGCAGCACTTACACTATTTGGCTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACGACTTCAGATAATTAAAACTTCGAATGCCATATGCCCAATTGTTTGGGATGACATACCAATCATCAGTTTGGATCTTTGGGAGCATGCTTATTATCTGGATTTCAAGAATGACAGGGGAAAGTACGTGGATACATTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGCACGCATGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

312

Amino Acids

35.56

Weight (kDa)

8.97

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	98 - 182	7.3e-19	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	194 - 292	8.2e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	71
AciI	CCGC	3 cut(s)	33, 69, 866
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	4 cut(s)	191, 494, 619, 904
AcuI	CTGAAG	1 cut(s)	692
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	25, 429, 827
AfiI	CCNNNNNNNGG	2 cut(s)	557, 575
AgsI	TTSAA	3 cut(s)	301, 618, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AloI	GAACNNNNNNTCC	1 cut(s)	906
AluBI	AGCT	4 cut(s)	220, 272, 412, 890
AluI	AGCT	4 cut(s)	220, 272, 412, 890
Alw26I	GTCTC	3 cut(s)	267, 555, 694
AlwI	GGATC	1 cut(s)	783
Ama87I	CYCGRG	1 cut(s)	885
AoxI	GGCC	2 cut(s)	373, 894
ApeKI	GCWGC	3 cut(s)	238, 506, 644
ApoI	RAATTY	4 cut(s)	191, 494, 619, 904
AsuC2I	CCSGG	2 cut(s)	255, 552
AsuHPI	GGTGA	3 cut(s)	42, 153, 167
AsuII	TTCGAA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	885
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	250, 493, 656
BccI	CCATC	2 cut(s)	384, 855
BceAI	ACGGC	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	826
BcnI	CCSGG	2 cut(s)	255, 552
BcoDI	GTCTC	3 cut(s)	267, 555, 694
BfaI	CTAG	2 cut(s)	153, 276
BfuI	GTATCC	1 cut(s)	826
BisI	GCNGC	5 cut(s)	69, 239, 507, 645, 867
BlsI	GCNGC	5 cut(s)	70, 240, 508, 646, 868
Bme1390I	CCNGG	2 cut(s)	255, 552
BmeT110I	CYCGRG	1 cut(s)	885
BmiI	GGNNCC	2 cut(s)	333, 610
BmrFI	CCNGG	2 cut(s)	255, 552
BmrI	ACTGGG	2 cut(s)	376, 584
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	2 cut(s)	376, 584
BpmI	CTGGAG	2 cut(s)	434, 569
Bpu10I	CCTNAGC	2 cut(s)	510, 891
Bpu14I	TTCGAA	1 cut(s)	725
BpuMI	CCSGG	2 cut(s)	255, 552
BsaAI	YACGTR	1 cut(s)	829
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 575
Bse1I	ACTGG	2 cut(s)	371, 579
Bse3DI	GCAATG	2 cut(s)	141, 876
BseGI	GGATG	2 cut(s)	757, 921
BseLI	CCNNNNNNNGG	2 cut(s)	557, 575
BseMI	GCAATG	2 cut(s)	141, 876
BseMII	CTCAG	2 cut(s)	524, 882
BseNI	ACTGG	2 cut(s)	371, 579
BseRI	GAGGAG	3 cut(s)	63, 570, 573
BseXI	GCAGC	3 cut(s)	250, 493, 656
BseYI	CCCAGC	2 cut(s)	216, 669
BshFI	GGCC	2 cut(s)	375, 896
BsiHKCI	CYCGRG	1 cut(s)	885
BsiSI	CCGG	3 cut(s)	62, 255, 551
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	557, 575
BsmAI	GTCTC	3 cut(s)	267, 555, 694
BsmBI	CGTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	733, 868
BsnI	GGCC	2 cut(s)	375, 896
Bso31I	GGTCTC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	725
Bsp143I	GATC	1 cut(s)	775
BspACI	CCGC	3 cut(s)	33, 69, 866
BspANI	GGCC	2 cut(s)	375, 896
BspCNI	CTCAG	2 cut(s)	523, 883
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	333, 610
BspPI	GGATC	1 cut(s)	783
BspT104I	TTCGAA	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	141, 876
BsrI	ACTGG	2 cut(s)	371, 579
BssMI	GATC	1 cut(s)	775
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	413, 690
BstACI	GRCGYC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	3 cut(s)	236, 789, 877
BstDEI	CTNAG	3 cut(s)	510, 891, 933
BstF5I	GGATG	2 cut(s)	757, 921
BstKTI	GATC	1 cut(s)	778
BstMAI	GTCTC	3 cut(s)	267, 555, 694
BstMBI	GATC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 217, 872, 881
BstNSI	RCATGY	3 cut(s)	101, 568, 791
BstSCI	CCNGG	2 cut(s)	253, 550
BstV1I	GCAGC	3 cut(s)	250, 493, 656
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	747
BstYI	RGATCY	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	2 cut(s)	375, 896
BtsCI	GGATG	2 cut(s)	757, 921
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	236, 789, 877
CciI	TCATGA	1 cut(s)	523
CseI	GACGC	2 cut(s)	74, 200
Csp6I	GTAC	3 cut(s)	24, 428, 826
CviAII	CATG	6 cut(s)	98, 524, 544, 565, 788, 880
CviQI	GTAC	3 cut(s)	24, 428, 826
DdeI	CTNAG	3 cut(s)	510, 891, 933
DpnI	GATC	1 cut(s)	777
DpnII	GATC	1 cut(s)	775
DraI	TTTAAA	2 cut(s)	687, 909
Eam1104I	CTCTTC	2 cut(s)	413, 690
EarI	CTCTTC	2 cut(s)	413, 690
Eco147I	AGGCCT	1 cut(s)	896
Eco31I	GGTCTC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	885
EcoT22I	ATGCAT	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	6 cut(s)	101, 527, 547, 568, 791, 883
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	6 cut(s)	97, 523, 543, 564, 787, 879
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	734
Fnu4HI	GCNGC	5 cut(s)	69, 239, 507, 645, 867
FokI	GGATG	2 cut(s)	764, 908
Fsp4HI	GCNGC	5 cut(s)	69, 239, 507, 645, 867
FspBI	CTAG	2 cut(s)	153, 276
GluI	GCNGC	5 cut(s)	69, 239, 507, 645, 867
GsaI	CCCAGC	2 cut(s)	220, 673
GsuI	CTGGAG	2 cut(s)	434, 569
HaeIII	GGCC	2 cut(s)	375, 896
HapII	CCGG	3 cut(s)	62, 255, 551
HgaI	GACGC	2 cut(s)	74, 200
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	101, 527, 547, 568, 791, 883
HinfI	GANTC	4 cut(s)	343, 481, 520, 539
HpaII	CCGG	3 cut(s)	62, 255, 551
HphI	GGTGA	3 cut(s)	42, 153, 167
Hpy166II	GTNNAC	2 cut(s)	364, 636
Hpy188I	TCNGA	3 cut(s)	402, 626, 711
Hpy188III	TCNNGA	4 cut(s)	276, 524, 800, 808
Hpy8I	GTNNAC	2 cut(s)	364, 636
HpyAV	CCTTC	2 cut(s)	168, 389
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	426, 828
HpyCH4V	TGCA	3 cut(s)	101, 234, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 217, 872, 881
HpyF3I	CTNAG	3 cut(s)	510, 891, 933
HpySE526I	ACGT	2 cut(s)	426, 828
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	101, 527, 547, 568, 791, 883
Kzo9I	GATC	1 cut(s)	775
LmnI	GCTCC	5 cut(s)	76, 119, 131, 331, 784
Lsp1109I	GCAGC	3 cut(s)	250, 493, 656
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	153, 276
MaeII	ACGT	2 cut(s)	426, 828
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	777
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	1 cut(s)	775
MboII	GAAGA	3 cut(s)	313, 430, 707
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	775
MluCI	AATT	8 cut(s)	37, 123, 191, 494, 619, 714, 741, 904
MlyI	GAGTC	2 cut(s)	352, 548
MmeI	TCCRAC	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	6 cut(s)	126, 207, 498, 686, 717, 908
MslI	CAYNNNNRTG	1 cut(s)	926
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	3 cut(s)	62, 255, 551
MspR9I	CCNGG	2 cut(s)	255, 552
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	733, 868
MwoI	GCNNNNNNNGC	4 cut(s)	119, 217, 872, 881
NciI	CCSGG	2 cut(s)	255, 552
NdeI	CATATG	1 cut(s)	734
NdeII	GATC	1 cut(s)	775
NlaIII	CATG	6 cut(s)	101, 527, 547, 568, 791, 883
NlaIV	GGNNCC	2 cut(s)	333, 610
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	3 cut(s)	101, 568, 791
NspV	TTCGAA	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	791
PaeR7I	CTCGAG	1 cut(s)	885
PagI	TCATGA	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	1 cut(s)	883
PctI	GAATGC	2 cut(s)	733, 868
PfeI	GAWTC	2 cut(s)	481, 520
PkrI	GCNGC	5 cut(s)	70, 240, 508, 646, 868
PleI	GAGTC	2 cut(s)	351, 547
PpsI	GAGTC	2 cut(s)	351, 547
Ppu21I	YACGTR	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	315
PspFI	CCCAGC	2 cut(s)	216, 669
PspN4I	GGNNCC	2 cut(s)	333, 610
PspXI	VCTCGAGB	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	3 cut(s)	25, 429, 827
RsaNI	GTAC	3 cut(s)	24, 428, 826
RseI	CAYNNNNRTG	1 cut(s)	926
SaqAI	TTAA	6 cut(s)	126, 207, 498, 686, 717, 908
SatI	GCNGC	5 cut(s)	69, 239, 507, 645, 867
Sau3AI	GATC	1 cut(s)	775
SchI	GAGTC	2 cut(s)	352, 548
ScrFI	CCNGG	2 cut(s)	255, 552
SfaNI	GCATC	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	885
SfuI	TTCGAA	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	926
SmlI	CTYRAG	1 cut(s)	885
SmoI	CTYRAG	1 cut(s)	885
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	8 cut(s)	37, 123, 191, 494, 619, 714, 741, 904
SseBI	AGGCCT	1 cut(s)	896
SsiI	CCGC	3 cut(s)	33, 69, 866
SspMI	CTAG	2 cut(s)	153, 276
StuI	AGGCCT	1 cut(s)	896
StyD4I	CCNGG	2 cut(s)	253, 550
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	429, 831
TaqI	TCGA	4 cut(s)	382, 447, 725, 886
TasI	AATT	8 cut(s)	37, 123, 191, 494, 619, 714, 741, 904
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	2 cut(s)	71, 869
TfiI	GAWTC	2 cut(s)	481, 520
Tru1I	TTAA	6 cut(s)	126, 207, 498, 686, 717, 908
Tru9I	TTAA	6 cut(s)	126, 207, 498, 686, 717, 908
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	3 cut(s)	238, 506, 644
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	17, 465, 857
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	371
XapI	RAATTY	4 cut(s)	191, 494, 619, 904
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	3 cut(s)	101, 568, 791
XhoI	CTCGAG	1 cut(s)	885
XspI	CTAG	2 cut(s)	153, 276
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.