pycom16g00960

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015842
Physical Location & Seq
Reverse (-)
578210 .. 579776
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGCGTCCGCACCGGAGGCGTCTACCGGCGATGACGCGCCGCACATCGACCATTGACTCCTCCGCCTCCGACATGCCTGAATCGGTCGTCCTTATCCGTCGGTTTCTCTTCTTTGTCGCGGTCTGTCTCTCCTGCCTGCTCCTCTACAACGACTCCAATGCCCTCCGCTTTCTACACCGGTTCTCTTCCTCTCCCTCCGCCTCATTCTCCGCCTACCTTTCCCCTCTCGTTAGCGAGGAACATAGGCTTGAAAAGGTTTTAAAGAATGCTACCATGGAAGACGGCACTGTGATTTTAACAACTTTGAATGAAGCATGGGCAGCTCCCGGCTCGATCCTCGATCTCTTTCTGGAGAGCTTTAGGATTGGAGTTGGAACTCATAGGCTATTGAGCCATTTGGTGATCATTGCCTTGGATCCAAAGGCATTTGAGCGTTGTTTGGAGGTGCATAACCATTGCTTTGCTCTTGTCATTCAAGACTCTGATTTTCGTCAGGAGGCTTATTTTATGACCCCTCACTACTTGAAGATGATGTGGGCAAGGATCGATTTTCTGCGCTCTGTTCTTGAGATGGGCTACAATTTCGTTTTCACGGATGCGGATATTATGTGGTTCAGGGATCCATTTCCACAGTTTTATGAGGATGCAGATTTTCAGATTGCATGCGATAATTTCTTAGGCAACTCGGATGATCTACAGAACAAACCGAATGGAGGGTTTAACTATGTAAAGTCCAATAGCAGGTCAATAGCGTTCTACAAATTTTGGTATTCCTCGCGGGAAACCTACCCTGGGTTCCATGATCGATGTCCTCAATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

275

Amino Acids

31.88

Weight (kDa)

6.3

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 129 - 268 1.2e-47 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 22
AccII CGCG 3 cut(s) 37, 119, 778
AciI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
AclWI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
AcsI RAATTY 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 713, 741, 792
AgeI ACCGGT 1 cut(s) 177
AgsI TTSAA 4 cut(s) 251, 307, 476, 526
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 2 cut(s) 323, 357
AluI AGCT 2 cut(s) 323, 357
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 761
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 2 cut(s) 39, 558
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 412
BamHI GGATCC 2 cut(s) 415, 619
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 792
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 732
BisI GCNGC 2 cut(s) 40, 321
BlsI GCNGC 2 cut(s) 41, 322
Bme1390I CCNGG 2 cut(s) 327, 792
BmiI GGNNCC 3 cut(s) 417, 621, 797
BmrFI CCNGG 2 cut(s) 327, 792
BmsI GCATC 2 cut(s) 586, 634
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 327
Bsa29I ATCGAT 2 cut(s) 546, 805
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 4 cut(s) 273, 411, 790, 791
BsaWI WCCGGW 2 cut(s) 12, 177
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 741, 792
Bse118I RCCGGY 2 cut(s) 25, 177
Bse3DI GCAATG 2 cut(s) 405, 454
BseBI CCWGG 1 cut(s) 792
BseCI ATCGAT 2 cut(s) 546, 805
BseDI CCNNGG 4 cut(s) 273, 411, 790, 791
BseGI GGATG 3 cut(s) 601, 649, 694
BseLI CCNNNNNNNGG 3 cut(s) 713, 741, 792
BseMI GCAATG 2 cut(s) 405, 454
BseRI GAGGAG 2 cut(s) 49, 131
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 3 cut(s) 37, 119, 778
Bsh1285I CGRYCG 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 177
BshVI ATCGAT 2 cut(s) 546, 805
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 4 cut(s) 13, 26, 178, 327
BslI CCNNNNNNNGG 3 cut(s) 713, 741, 792
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 271
Bsp143I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
BspDI ATCGAT 2 cut(s) 546, 805
BspFNI CGCG 3 cut(s) 37, 119, 778
BspLI GGNNCC 3 cut(s) 417, 621, 797
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
BsrDI GCAATG 2 cut(s) 405, 454
BsrFI RCCGGY 2 cut(s) 25, 177
BssAI RCCGGY 2 cut(s) 25, 177
BssECI CCNNGG 4 cut(s) 273, 411, 790, 791
BssMI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 2 cut(s) 273, 411
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 289, 633
Bst6I CTCTTC 2 cut(s) 113, 190
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 137, 664
BstDEI CTNAG 1 cut(s) 676
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 601, 649, 694
BstFNI CGCG 3 cut(s) 37, 119, 778
BstHHI GCGC 2 cut(s) 39, 558
BstKTI GATC 8 cut(s) 336, 343, 405, 418, 546, 622, 694, 805
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 16, 320
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 76, 666
BstSCI CCNGG 2 cut(s) 325, 790
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 3 cut(s) 37, 119, 778
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 2 cut(s) 415, 619
BstYI RGATCY 2 cut(s) 415, 619
Bsu15I ATCGAT 2 cut(s) 546, 805
BsuTUI ATCGAT 2 cut(s) 546, 805
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 601, 649, 694
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 137, 664
CfoI GCGC 2 cut(s) 39, 558
Cfr10I RCCGGY 2 cut(s) 25, 177
ClaI ATCGAT 2 cut(s) 546, 805
CseI GACGC 2 cut(s) 8, 43
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 5 cut(s) 73, 274, 315, 663, 800
CviJI RGCY 8 cut(s) 247, 323, 330, 357, 385, 393, 500, 576
CviKI_1 RGCY 8 cut(s) 247, 323, 330, 357, 385, 393, 500, 576
DdeI CTNAG 1 cut(s) 676
DpnI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 693, 804
DpnII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
DraI TTTAAA 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 113, 190
EarI CTCTTC 2 cut(s) 113, 190
EciI GGCGGA 3 cut(s) 52, 187, 199
Eco130I CCWWGG 2 cut(s) 273, 411
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 273, 411
ErhI CCWWGG 2 cut(s) 273, 411
FaeI CATG 5 cut(s) 76, 277, 318, 666, 803
FatI CATG 5 cut(s) 72, 273, 314, 662, 799
FauI CCCGC 1 cut(s) 771
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 40, 321
FokI GGATG 3 cut(s) 608, 656, 701
Fsp4HI GCNGC 2 cut(s) 40, 321
GlaI GCGC 2 cut(s) 38, 557
GluI GCNGC 2 cut(s) 40, 321
GsuI CTGGAG 1 cut(s) 371
HapII CCGG 4 cut(s) 13, 26, 178, 327
HgaI GACGC 2 cut(s) 8, 43
HhaI GCGC 2 cut(s) 39, 558
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 5 cut(s) 76, 277, 318, 666, 803
Hin6I GCGC 2 cut(s) 37, 556
HinP1I GCGC 2 cut(s) 37, 556
HinfI GANTC 4 cut(s) 56, 80, 152, 479
HpaII CCGG 4 cut(s) 13, 26, 178, 327
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 70, 484, 657, 688
Hpy188III TCNNGA 4 cut(s) 350, 476, 494, 566
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 289, 633
HpyCH4V TGCA 3 cut(s) 448, 647, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 320
HpyF3I CTNAG 1 cut(s) 676
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 5 cut(s) 76, 277, 318, 666, 803
HspAI GCGC 2 cut(s) 37, 556
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
LmnI GCTCC 2 cut(s) 144, 328
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 2 cut(s) 586, 634
MalI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 693, 804
MboI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
MboII GAAGA 4 cut(s) 100, 177, 290, 538
MflI RGATCY 2 cut(s) 415, 619
MluCI AATT 3 cut(s) 580, 670, 761
MlyI GAGTC 3 cut(s) 50, 146, 473
MmeI TCCRAC 2 cut(s) 93, 352
MseI TTAA 4 cut(s) 260, 296, 720, 823
MspI CCGG 4 cut(s) 13, 26, 178, 327
MspR9I CCNGG 2 cut(s) 327, 792
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 3 cut(s) 37, 119, 778
MwoI GCNNNNNNNGC 2 cut(s) 16, 320
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 273
NdeII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
NlaIII CATG 5 cut(s) 76, 277, 318, 666, 803
NlaIV GGNNCC 3 cut(s) 417, 621, 797
NspI RCATGY 2 cut(s) 76, 666
PaeI GCATGC 1 cut(s) 666
PasI CCCWGGG 1 cut(s) 791
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 2 cut(s) 41, 322
PleI GAGTC 3 cut(s) 50, 146, 473
PpsI GAGTC 3 cut(s) 50, 146, 473
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 3 cut(s) 417, 621, 797
PsuI RGATCY 2 cut(s) 415, 619
SaqAI TTAA 4 cut(s) 260, 296, 720, 823
SatI GCNGC 2 cut(s) 40, 321
Sau3AI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
SchI GAGTC 3 cut(s) 50, 146, 473
ScrFI CCNGG 2 cut(s) 327, 792
SetI ASST 7 cut(s) 219, 258, 325, 359, 447, 746, 788
SfaNI GCATC 2 cut(s) 586, 634
SfcI CTRYAG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 1 cut(s) 666
Sse9I AATT 3 cut(s) 580, 670, 761
SsiI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
SspI AATATT 1 cut(s) 818
StyD4I CCNGG 2 cut(s) 325, 790
StyI CCWWGG 2 cut(s) 273, 411
TaaI ACNGT 2 cut(s) 289, 633
TaqI TCGA 5 cut(s) 47, 332, 339, 546, 805
TaqII GACCGA 1 cut(s) 73
TasI AATT 3 cut(s) 580, 670, 761
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 260, 296, 720, 823
Tru9I TTAA 4 cut(s) 260, 296, 720, 823
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 86, 608
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 761
XceI RCATGY 2 cut(s) 76, 666
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.