Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Reverse (-)

794095 .. 796743

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCTAGAAAGCAAGGAGGAGTGATGTGGCCTAGATTAGTGGCAAACAAGATTCTGAGAAAGCAAATGGGAAGCAACAACTTTGTAGCAGATTTTCCAAGCAACGATGTCTCGGAAGGATTAGTGCTGGAAACACCAAGCGATGATCAACCGTCTTCAAACCCTACGTCCACCGTCTTCAATCAGCAGAAGGACACTAGCACACACAAGTACAAGGTTTTTGTTAGTACGTGGAATATTGGTGGGGTGGAACCACAAGAAGATATGAATATGGAGGATTTGATTGACACGTCCTGTGACATCTATGTTTTTGGGTTTCAAGAAATCGTTCCTCTGAAAGCCTCCAATGTTCTAGGATCGGAGAATAGTAAGATCTGCATGAAATGGAATTCCTTGATCAGAGAAGCTTTAAACAAGAATAGACGCAACAATATTAAAGATCCACACTTCTACTGTATTATAAGCAAGCAAATGGTGGGGATTCTAGTATCAGTTTGGATTCGAAGTAATCTGTGTCCATTTATTCGGAATCCAAGTGTCTCCTGTGTTGGTTGTGGGATCATGGGATGCCTAGGAAATAAGGGTTCGGTTTCTGTTAGGTTTCGGTTACATGAAACAAGCTTTTGCTTTGTGAGCACTCATCTAGCTTCAGGGAGTAGAGAAGGAGATGAGAAACTGAGAAATTCTAACATTTCCGATATATTGTCAAGAACAAGTTTTCCTAGAGGCCCCTTGCTTGATTTGCCCCGAAAGATCCTAGATTATGATCGAGTAATTTTCCTCGGAGATTTGAATTATAGAATTTCCCTTCCGGAAGCAACAACGCGTTCGTTGGTGGAAATGAGAGAATGGAATACCTTACTAAAACATGATCAGGTAGACCACTTAATCGTTAGTCTGATGATGGAGCTCAAAGAGGGACAAGTACTCGAAGGTTGGAACGAAGGAGCTGTTGAATTTGCTCCCACTTACAAATATTGTCCAAATTCTGATGTATACTATGGGTGTTCTCCGGGAAAGAAAGTTGAAAAGAAGCGTGCTCCTGCATGGTGTGATCGGATAATTTGGCGCGGAGAAGGATTGAAGCAACATGTATACAATAGAGGTGAATCAAAATTGTCTGATCACAGACCTGTGAATGCAATATTCACTGCCGAAGTTAGGCTTTCAAGAACATTGAGAGGATACCATAGCTTTTTTCTATCTGACCGGTTTGAGAGAATATCAAGCCAGTTTCAAATATCCTCCACCGATAATTTTCTCTGTAAAGGTAGATCAACAAGCTTGAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

432

Amino Acids

48.98

Weight (kDa)

8.9

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	77 - 381	2.1e-66	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AccI	GTMKAC	3 cut(s)	879, 996, 1095
AccII	CGCG	2 cut(s)	826, 1071
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	1 cut(s)	1071
AclWI	GGATC	4 cut(s)	364, 434, 566, 748
AcsI	RAATTY	5 cut(s)	388, 682, 801, 956, 985
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	212, 229, 927
AfiI	CCNNNNNNNGG	1 cut(s)	1161
AflIII	ACRYGT	3 cut(s)	288, 824, 1090
AgeI	ACCGGT	1 cut(s)	1209
AjiI	CACGTC	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	8 cut(s)	407, 621, 647, 910, 950, 1194, 1284, 1291
AluI	AGCT	8 cut(s)	407, 621, 647, 910, 950, 1194, 1284, 1291
Alw21I	GWGCWC	3 cut(s)	638, 912, 1042
Alw26I	GTCTC	2 cut(s)	115, 544
AlwI	GGATC	4 cut(s)	364, 434, 566, 748
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	2 cut(s)	29, 727
ApoI	RAATTY	5 cut(s)	388, 682, 801, 956, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsiGI	ACCGGT	1 cut(s)	1209
Asp700I	GAANNNNTTC	1 cut(s)	327
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	1071
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	1014
AsuHPI	GGTGA	1 cut(s)	1118
AsuII	TTCGAA	1 cut(s)	502
AvrII	CCTAGG	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	912
BbsI	GAAGAC	2 cut(s)	147, 169
Bbv12I	GWGCWC	3 cut(s)	638, 912, 1042
BccI	CCATC	1 cut(s)	898
BciVI	GTATCC	1 cut(s)	1178
BclI	TGATCA	4 cut(s)	145, 396, 871, 1123
BcnI	CCSGG	1 cut(s)	1014
BcoDI	GTCTC	2 cut(s)	115, 544
BfaI	CTAG	9 cut(s)	6, 33, 198, 353, 485, 572, 644, 723, 758
BfuI	GTATCC	1 cut(s)	1178
BglII	AGATCT	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	571
BmcAI	AGTACT	1 cut(s)	927
Bme1390I	CCNGG	1 cut(s)	1014
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	2 cut(s)	252, 730
BmrFI	CCNGG	1 cut(s)	1014
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	2 cut(s)	147, 169
Bpu14I	TTCGAA	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	571, 781
BsaWI	WCCGGW	2 cut(s)	811, 1209
Bsc4I	CCNNNNNNNGG	1 cut(s)	1161
Bse118I	RCCGGY	1 cut(s)	1209
Bse1I	ACTGG	1 cut(s)	1231
Bse8I	GATNNNNATC	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	811
BseDI	CCNNGG	2 cut(s)	571, 781
BseGI	GGATG	1 cut(s)	572
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	1161
BseMII	CTCAG	2 cut(s)	47, 668
BseNI	ACTGG	1 cut(s)	1231
BseRI	GAGGAG	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	826, 1071
BshFI	GGCC	2 cut(s)	31, 729
BshTI	ACCGGT	1 cut(s)	1209
BsiHKAI	GWGCWC	3 cut(s)	638, 912, 1042
BsiSI	CCGG	3 cut(s)	812, 1013, 1210
BslFI	GGGAC	1 cut(s)	933
BslI	CCNNNNNNNGG	1 cut(s)	1161
BsmAI	GTCTC	2 cut(s)	115, 544
BsmFI	GGGAC	1 cut(s)	933
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	2 cut(s)	31, 729
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	638, 912, 1042
Bsp13I	TCCGGA	1 cut(s)	811
BspACI	CCGC	1 cut(s)	1071
BspANI	GGCC	2 cut(s)	31, 729
BspCNI	CTCAG	2 cut(s)	48, 669
BspEI	TCCGGA	1 cut(s)	811
BspFNI	CGCG	2 cut(s)	826, 1071
BspLI	GGNNCC	2 cut(s)	252, 730
BspPI	GGATC	4 cut(s)	364, 434, 566, 748
BspT104I	TTCGAA	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	1209
BsrI	ACTGG	1 cut(s)	1231
BssAI	RCCGGY	1 cut(s)	1209
BssECI	CCNNGG	2 cut(s)	571, 781
BssNAI	GTATAC	2 cut(s)	997, 1096
BssT1I	CCWWGG	1 cut(s)	571
Bst1107I	GTATAC	2 cut(s)	997, 1096
Bst4CI	ACNGT	3 cut(s)	153, 175, 455
BstBAI	YACGTR	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	467, 1038
BstDEI	CTNAG	2 cut(s)	56, 677
BstF5I	GGATG	1 cut(s)	572
BstFNI	CGCG	2 cut(s)	826, 1071
BstHHI	GCGC	1 cut(s)	1071
BstMAI	GTCTC	2 cut(s)	115, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	633, 742
BstNSI	RCATGY	1 cut(s)	1094
BstSCI	CCNGG	1 cut(s)	1012
BstUI	CGCG	2 cut(s)	826, 1071
BstV2I	GAAGAC	2 cut(s)	147, 169
BstX2I	RGATCY	3 cut(s)	372, 439, 753
BstYI	RGATCY	3 cut(s)	372, 439, 753
BstZ17I	GTATAC	2 cut(s)	997, 1096
BsuI	GTATCC	1 cut(s)	1178
BsuRI	GGCC	2 cut(s)	31, 729
BtgZI	GCGATG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	1149
BtsIMutI	CAGTG	1 cut(s)	1149
Cac8I	GCNNGC	2 cut(s)	467, 1038
CfoI	GCGC	1 cut(s)	1071
Cfr10I	RCCGGY	1 cut(s)	1209
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	211, 228, 926
CspAI	ACCGGT	1 cut(s)	1209
CviAII	CATG	6 cut(s)	379, 562, 611, 869, 1047, 1091
CviQI	GTAC	3 cut(s)	211, 228, 926
DdeI	CTNAG	2 cut(s)	56, 677
DraI	TTTAAA	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	910
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	912
Eco53kI	GAGCTC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	6 cut(s)	382, 565, 614, 872, 1050, 1094
FalI	AAGNNNNNCTT	2 cut(s)	1149, 1181
FaqI	GGGAC	1 cut(s)	933
FatI	CATG	6 cut(s)	378, 561, 610, 868, 1046, 1090
FbaI	TGATCA	4 cut(s)	145, 396, 871, 1123
FblI	GTMKAC	3 cut(s)	879, 996, 1095
FokI	GGATG	1 cut(s)	579
FriOI	GRGCYC	1 cut(s)	912
FspBI	CTAG	9 cut(s)	6, 33, 198, 353, 485, 572, 644, 723, 758
GlaI	GCGC	1 cut(s)	1070
HaeIII	GGCC	2 cut(s)	31, 729
HapII	CCGG	3 cut(s)	812, 1013, 1210
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	1071
Hin1II	CATG	6 cut(s)	382, 565, 614, 872, 1050, 1094
Hin6I	GCGC	1 cut(s)	1069
HinP1I	GCGC	1 cut(s)	1069
HindIII	AAGCTT	4 cut(s)	405, 619, 1282, 1289
HinfI	GANTC	5 cut(s)	52, 481, 499, 529, 1109
HpaII	CCGG	3 cut(s)	812, 1013, 1210
HphI	GGTGA	1 cut(s)	1118
Hpy166II	GTNNAC	4 cut(s)	171, 880, 997, 1096
Hpy188III	TCNNGA	4 cut(s)	320, 708, 812, 1170
Hpy8I	GTNNAC	4 cut(s)	171, 880, 997, 1096
HpyAV	CCTTC	7 cut(s)	110, 184, 656, 818, 926, 938, 1070
HpyCH4III	ACNGT	3 cut(s)	153, 175, 455
HpyCH4IV	ACGT	3 cut(s)	167, 230, 290
HpyCH4V	TGCA	3 cut(s)	378, 1046, 1142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	633, 742
HpyF3I	CTNAG	2 cut(s)	56, 677
HpySE526I	ACGT	3 cut(s)	167, 230, 290
Hsp92II	CATG	6 cut(s)	382, 565, 614, 872, 1050, 1094
HspAI	GCGC	1 cut(s)	1069
Kpn2I	TCCGGA	1 cut(s)	811
Ksp22I	TGATCA	4 cut(s)	145, 396, 871, 1123
LmnI	GCTCC	4 cut(s)	907, 947, 967, 1045
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	9 cut(s)	6, 33, 198, 353, 485, 572, 644, 723, 758
MaeII	ACGT	3 cut(s)	167, 230, 290
MaeIII	GTNAC	2 cut(s)	296, 606
MboII	GAAGA	3 cut(s)	147, 169, 272
MflI	RGATCY	3 cut(s)	372, 439, 753
MhlI	GDGCHC	3 cut(s)	638, 912, 1042
MluI	ACGCGT	1 cut(s)	824
MmeI	TCCRAC	1 cut(s)	917
MroI	TCCGGA	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	410, 435, 887
MspI	CCGG	3 cut(s)	812, 1013, 1210
MspR9I	CCNGG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	1144
MvnI	CGCG	2 cut(s)	826, 1071
MwoI	GCNNNNNNNGC	2 cut(s)	633, 742
NciI	CCSGG	1 cut(s)	1014
NlaIII	CATG	6 cut(s)	382, 565, 614, 872, 1050, 1094
NlaIV	GGNNCC	2 cut(s)	252, 730
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	1094
NspV	TTCGAA	1 cut(s)	502
PciI	ACATGT	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	1144
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	5 cut(s)	52, 481, 499, 529, 1109
PfoI	TCCNGGA	1 cut(s)	1012
PinAI	ACCGGT	1 cut(s)	1209
Ppu21I	YACGTR	1 cut(s)	231
PscI	ACATGT	1 cut(s)	1090
PsiI	TTATAA	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	912
PspN4I	GGNNCC	2 cut(s)	252, 730
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	3 cut(s)	372, 439, 753
RsaI	GTAC	3 cut(s)	212, 229, 927
RsaNI	GTAC	3 cut(s)	211, 228, 926
SacI	GAGCTC	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	410, 435, 887
Sau96I	GGNCC	1 cut(s)	728
ScaI	AGTACT	1 cut(s)	927
ScrFI	CCNGG	1 cut(s)	1014
SduI	GDGCHC	3 cut(s)	638, 912, 1042
SfaNI	GCATC	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	502
SsiI	CCGC	1 cut(s)	1071
SspI	AATATT	4 cut(s)	238, 433, 977, 1146
SspMI	CTAG	9 cut(s)	6, 33, 198, 353, 485, 572, 644, 723, 758
SstI	GAGCTC	1 cut(s)	912
StyD4I	CCNGG	1 cut(s)	1012
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	3 cut(s)	153, 175, 455
TaiI	ACGT	3 cut(s)	170, 233, 293
TaqI	TCGA	3 cut(s)	502, 769, 930
TatI	WGTACW	2 cut(s)	210, 925
TfiI	GAWTC	5 cut(s)	52, 481, 499, 529, 1109
Tru1I	TTAA	3 cut(s)	410, 435, 887
Tru9I	TTAA	3 cut(s)	410, 435, 887
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	281, 395, 627
TspRI	CASTG	1 cut(s)	1156
XapI	RAATTY	5 cut(s)	388, 682, 801, 956, 985
XceI	RCATGY	1 cut(s)	1094
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	3 cut(s)	879, 996, 1095
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	9 cut(s)	6, 33, 198, 353, 485, 572, 644, 723, 758
ZrmI	AGTACT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.