Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Forward (+)

1502952 .. 1505986

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGTTTTACCGACGGCGATGGCGATGGGATCTTCAAGCTTGGAGTTGACGATATCCGTACCCGGCTTCTCTTCGTACCCGTCTTTTCTTAATTCATCTGTGAGAGACTTGGACATAAACCAAGTACCATCACTACAAGGAGATCAAGAAGAGTGGATGACAGCAGGCATGGAAGACGAAGAAGAAAGCAGCAACGGATCGGGCCCTCCCCGCAAGAAGCTTCGTCTCACGAAGGAACAGTCTCGTCTTCTCGAAGAAAGCTTCAGACAACACCATACCTTAAACCCTAAGCAGAAAGAGGCGTTGGCGATGCAGTTGAAGCTGAGGCCACGCCAGGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATCTGAAGAGATGGTTCGGATCGTTGACTGAACAGAATCGGCGGCTGCAAAGGGAGGTGAAGGAGCTGAGGGCAATGAAAGTCGGCCCGCCCACCGTGCTTTCCCCCCACAGTTGCGACCCTCTTCCGGCATCCACACTCACCATGTGCCCTCGTTGCGAGCGAGTCACCACCACCACCAATTTCGACAGAGACACGGTCAGCGGGCCCACCAAAACTAATCATATCTCGGCCGCCGCGGCCACCACCTTGTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

8.94

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	72 - 126	2.7e-16	Homeodomain
HALZ	PF02183	128 - 162	5.2e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	644
AciI	CCGC	8 cut(s)	5, 214, 448, 494, 609, 639, 642, 644
AclWI	GGATC	3 cut(s)	40, 208, 433
AcoI	YGGCCR	2 cut(s)	636, 645
AcuI	CTGAAG	3 cut(s)	250, 401, 431
AdeI	CACNNNGTG	1 cut(s)	552
AfaI	GTAC	3 cut(s)	63, 80, 129
AfiI	CCNNNNNNNGG	2 cut(s)	343, 532
AgsI	TTSAA	3 cut(s)	39, 322, 356
AjnI	CCWGG	2 cut(s)	336, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	6 cut(s)	42, 223, 264, 325, 379, 472
AluI	AGCT	6 cut(s)	42, 223, 264, 325, 379, 472
Alw26I	GTCTC	4 cut(s)	102, 233, 249, 591
AlwI	GGATC	3 cut(s)	40, 208, 433
AoxI	GGCC	7 cut(s)	205, 329, 366, 490, 611, 636, 645
ApaI	GGGCCC	2 cut(s)	209, 615
ApeKI	GCWGC	2 cut(s)	192, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	6 cut(s)	205, 206, 366, 491, 611, 612
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	475, 538, 565
BaeGI	GKGCMC	3 cut(s)	209, 557, 615
BanII	GRGCYC	2 cut(s)	209, 615
BbsI	GAAGAC	2 cut(s)	183, 242
BbvCI	CCTCAGC	2 cut(s)	326, 473
BbvI	GCAGC	2 cut(s)	204, 438
BccI	CCATC	5 cut(s)	16, 22, 139, 388, 411
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	338, 370
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	4 cut(s)	102, 233, 249, 591
BglI	GCCNNNNNGGC	1 cut(s)	644
BisI	GCNGC	6 cut(s)	193, 449, 452, 639, 642, 645
BlsI	GCNGC	6 cut(s)	194, 450, 453, 640, 643, 646
Bme1390I	CCNGG	3 cut(s)	66, 338, 370
BmgT120I	GGNCC	6 cut(s)	205, 206, 366, 491, 611, 612
BmiI	GGNNCC	2 cut(s)	207, 613
BmrFI	CCNGG	3 cut(s)	66, 338, 370
BmsI	GCATC	2 cut(s)	303, 545
BpiI	GAAGAC	2 cut(s)	183, 242
Bpu10I	CCTNAGC	3 cut(s)	291, 326, 473
BpuMI	CCSGG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 532
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	338, 370
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	165, 536
BseLI	CCNNNNNNNGG	2 cut(s)	343, 532
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	317, 464
BseSI	GKGCMC	3 cut(s)	209, 557, 615
BseX3I	CGGCCG	1 cut(s)	636
BseXI	GCAGC	2 cut(s)	204, 438
Bsh1236I	CGCG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	639
BshFI	GGCC	7 cut(s)	207, 331, 368, 492, 613, 638, 647
BsiEI	CGRYCG	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	66, 533
BslI	CCNNNNNNNGG	2 cut(s)	343, 532
BsmAI	GTCTC	4 cut(s)	102, 233, 249, 591
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	7 cut(s)	207, 331, 368, 492, 613, 638, 647
Bsp120I	GGGCCC	2 cut(s)	205, 611
Bsp1286I	GDGCHC	3 cut(s)	209, 557, 615
Bsp143I	GATC	4 cut(s)	32, 145, 200, 425
BspACI	CCGC	8 cut(s)	5, 214, 448, 494, 609, 639, 642, 644
BspANI	GGCC	7 cut(s)	207, 331, 368, 492, 613, 638, 647
BspCNI	CTCAG	2 cut(s)	318, 465
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	2 cut(s)	207, 613
BspPI	GGATC	3 cut(s)	40, 208, 433
BsrDI	GCAATG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	4 cut(s)	32, 145, 200, 425
Bst2UI	CCWGG	2 cut(s)	338, 370
Bst4CI	ACNGT	4 cut(s)	243, 502, 518, 604
Bst6I	CTCTTC	4 cut(s)	79, 147, 407, 534
BstC8I	GCNNGC	5 cut(s)	169, 377, 494, 566, 611
BstDEI	CTNAG	3 cut(s)	291, 326, 473
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	165, 536
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	4 cut(s)	35, 148, 203, 428
BstMAI	GTCTC	4 cut(s)	102, 233, 249, 591
BstMBI	GATC	4 cut(s)	32, 145, 200, 425
BstMCI	CGRYCG	1 cut(s)	639
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 322, 502, 561, 644
BstNI	CCWGG	2 cut(s)	338, 370
BstSCI	CCNGG	3 cut(s)	64, 336, 368
BstSLI	GKGCMC	3 cut(s)	209, 557, 615
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	204, 438
BstV2I	GAAGAC	2 cut(s)	183, 242
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	636
BsuRI	GGCC	7 cut(s)	207, 331, 368, 492, 613, 638, 647
BtgI	CCRYGG	1 cut(s)	642
BtgZI	GCGATG	3 cut(s)	35, 41, 326
BtsCI	GGATG	2 cut(s)	165, 536
Cac8I	GCNNGC	5 cut(s)	169, 377, 494, 566, 611
Cfr13I	GGNCC	6 cut(s)	205, 206, 366, 491, 611, 612
Cfr42I	CCGCGG	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	62, 79, 128
CspCI	CAANNNNNGTGG	2 cut(s)	137, 172
CviAII	CATG	2 cut(s)	172, 550
CviQI	GTAC	3 cut(s)	62, 79, 128
DdeI	CTNAG	3 cut(s)	291, 326, 473
DpnI	GATC	4 cut(s)	34, 147, 202, 427
DpnII	GATC	4 cut(s)	32, 145, 200, 425
DraIII	CACNNNGTG	1 cut(s)	552
EaeI	YGGCCR	2 cut(s)	636, 645
EagI	CGGCCG	1 cut(s)	636
Eam1104I	CTCTTC	4 cut(s)	79, 147, 407, 534
EarI	CTCTTC	4 cut(s)	79, 147, 407, 534
EclXI	CGGCCG	1 cut(s)	636
Eco24I	GRGCYC	2 cut(s)	209, 615
Eco32I	GATATC	1 cut(s)	57
Eco52I	CGGCCG	1 cut(s)	636
Eco57I	CTGAAG	3 cut(s)	250, 401, 431
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	336, 368
EcoRV	GATATC	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	209, 615
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	175, 553
FaiI	YATR	5 cut(s)	119, 173, 279, 551, 630
FatI	CATG	2 cut(s)	171, 549
FauI	CCCGC	3 cut(s)	221, 501, 602
Fnu4HI	GCNGC	6 cut(s)	193, 449, 452, 639, 642, 645
FokI	GGATG	2 cut(s)	172, 523
FriOI	GRGCYC	2 cut(s)	209, 615
Fsp4HI	GCNGC	6 cut(s)	193, 449, 452, 639, 642, 645
GluI	GCNGC	6 cut(s)	193, 449, 452, 639, 642, 645
HaeIII	GGCC	7 cut(s)	207, 331, 368, 492, 613, 638, 647
HapII	CCGG	2 cut(s)	66, 533
Hin1II	CATG	2 cut(s)	175, 553
HincII	GTYRAC	2 cut(s)	51, 432
HindII	GTYRAC	2 cut(s)	51, 432
HindIII	AAGCTT	3 cut(s)	40, 221, 262
HinfI	GANTC	2 cut(s)	442, 570
HpaII	CCGG	2 cut(s)	66, 533
HphI	GGTGA	3 cut(s)	475, 538, 565
Hpy166II	GTNNAC	2 cut(s)	51, 432
Hpy188I	TCNGA	3 cut(s)	269, 411, 425
Hpy188III	TCNNGA	3 cut(s)	149, 232, 254
Hpy8I	GTNNAC	2 cut(s)	51, 432
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	229, 460
HpyCH4III	ACNGT	4 cut(s)	243, 502, 518, 604
HpyCH4V	TGCA	2 cut(s)	316, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 322, 502, 561, 644
HpyF3I	CTNAG	3 cut(s)	291, 326, 473
Hsp92II	CATG	2 cut(s)	175, 553
KspI	CCGCGG	1 cut(s)	645
Kzo9I	GATC	4 cut(s)	32, 145, 200, 425
LmnI	GCTCC	2 cut(s)	372, 469
LpnPI	CCDG	7 cut(s)	79, 153, 323, 350, 355, 382, 546
Lsp1109I	GCAGC	2 cut(s)	204, 438
LweI	GCATC	2 cut(s)	303, 545
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	4 cut(s)	34, 147, 202, 427
MboI	GATC	4 cut(s)	32, 145, 200, 425
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	209, 557, 615
MluCI	AATT	2 cut(s)	94, 586
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	219, 295, 321, 337, 454, 468, 537, 567
MseI	TTAA	3 cut(s)	93, 284, 664
MspA1I	CMGCKG	2 cut(s)	609, 644
MspI	CCGG	2 cut(s)	66, 533
MspR9I	CCNGG	3 cut(s)	66, 338, 370
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	338, 370
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	5 cut(s)	213, 322, 502, 561, 644
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	32, 145, 200, 425
NlaIII	CATG	2 cut(s)	175, 553
NlaIV	GGNNCC	2 cut(s)	207, 613
NmeAIII	GCCGAG	1 cut(s)	614
NmuCI	GTSAC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 565
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	442
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	194, 450, 453, 640, 643, 646
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	2 cut(s)	336, 368
PspGI	CCWGG	2 cut(s)	336, 368
PspN4I	GGNNCC	2 cut(s)	207, 613
PspOMI	GGGCCC	2 cut(s)	205, 611
PspPI	GGNCC	6 cut(s)	205, 206, 366, 491, 611, 612
PsuI	RGATCY	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	3 cut(s)	63, 80, 129
RsaNI	GTAC	3 cut(s)	62, 79, 128
SacII	CCGCGG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	93, 284, 664
SatI	GCNGC	6 cut(s)	193, 449, 452, 639, 642, 645
Sau3AI	GATC	4 cut(s)	32, 145, 200, 425
Sau96I	GGNCC	6 cut(s)	205, 206, 366, 491, 611, 612
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	3 cut(s)	66, 338, 370
SduI	GDGCHC	3 cut(s)	209, 557, 615
SfaNI	GCATC	2 cut(s)	303, 545
SfiI	GGCCNNNNNGGCC	1 cut(s)	644
Sfr303I	CCGCGG	1 cut(s)	645
SgrBI	CCGCGG	1 cut(s)	645
Sse9I	AATT	2 cut(s)	94, 586
SsiI	CCGC	8 cut(s)	5, 214, 448, 494, 609, 639, 642, 644
StyD4I	CCNGG	3 cut(s)	64, 336, 368
TaaI	ACNGT	4 cut(s)	243, 502, 518, 604
TaqI	TCGA	2 cut(s)	255, 591
TasI	AATT	2 cut(s)	94, 586
TauI	GCSGC	4 cut(s)	451, 641, 644, 647
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	3 cut(s)	93, 284, 664
Tru9I	TTAA	3 cut(s)	93, 284, 664
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	192, 451
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	2 cut(s)	87, 497
TspGWI	ACGGA	2 cut(s)	49, 213
Tth111I	GACNNNGTC	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.