pycom16g02430

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015610
Physical Location & Seq
Reverse (-)
1555598 .. 1556678
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGGAGATGGAGGGTGATCGGATTCAGGGGTCTCCATCTTATTACAGCGTTCTTGGTGTCAGCTCGGATTCTTCCATTGAAGAGATAAGGCGTGCTTATCGCAAGCTGGCTATGCAATGGCATCCGGACAGGTGGACAAGAACTCCTTCTTTGTTGGGTGAAGCCAAGCGGAAATTCCAGCAAATTCAAGAAGCCTATTCAGACCAGAGAAAACGAAGAATGTACGACGCTGGCCTGTACGATCCTGACGACGAAGAGGACGAGGGGTTCGGCGATTTTGTGCAAGAAATGGTGTCTCTGATGGCGGAGTCCAGAAGAGAGGCAAAGAGTTATAGCATGGAGGACCTGCAAGCGATGTTCATGGAGATGGTCCAAGGGTTCGGCCCTCCTTCGTCCTCTTGTTTCTGTGGACAATCCGCGGCTTTCGAACAATCTGGATGCTCGAAGAGAACACGGCTCGAATCTAGTTCCGGGATTGGGAGACGTTCGGGTTCAGGCTCACCTTTACATGTACCAAACGTAGGGATGTATGGAGATGGATTTTTTTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

5.06

Isoelectric Point (pI)

76.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 76 1.8e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccII CGCG 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 4 cut(s) 169, 305, 417, 419
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 173, 183
AfaI GTAC 3 cut(s) 224, 239, 513
AfiI CCNNNNNNNGG 2 cut(s) 477, 521
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 2 cut(s) 80, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 2 cut(s) 63, 106
AluI AGCT 2 cut(s) 63, 106
Alw26I GTCTC 3 cut(s) 36, 300, 475
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 2 cut(s) 232, 382
ApoI RAATTY 2 cut(s) 173, 183
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 343, 370, 383
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 3 cut(s) 26, 170, 492
AsuII TTCGAA 1 cut(s) 426
AvaII GGWCC 2 cut(s) 343, 370
BccI CCATC 4 cut(s) 43, 295, 361, 530
BceAI ACGGC 1 cut(s) 470
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 3 cut(s) 36, 300, 475
BfaI CTAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 343, 370
BmgT120I GGNCC 3 cut(s) 343, 370, 383
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 130, 428
Bpu14I TTCGAA 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 373, 417
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 521
Bse3DI GCAATG 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 373, 417
BseGI GGATG 3 cut(s) 121, 443, 531
BseLI CCNNNNNNNGG 2 cut(s) 477, 521
BseMI GCAATG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 234, 384
BsiSI CCGG 2 cut(s) 125, 471
BslI CCNNNNNNNGG 2 cut(s) 477, 521
BsmAI GTCTC 3 cut(s) 36, 300, 475
BsmBI CGTCTC 1 cut(s) 475
BsnI GGCC 2 cut(s) 234, 384
Bso31I GGTCTC 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 16, 241
BspACI CCGC 4 cut(s) 169, 305, 417, 419
BspANI GGCC 2 cut(s) 234, 384
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 419
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 373, 417
BssMI GATC 2 cut(s) 16, 241
BssT1I CCWWGG 1 cut(s) 373
Bst6I CTCTTC 4 cut(s) 75, 249, 310, 440
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 93, 104, 108, 232, 351
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 121, 443, 531
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 2 cut(s) 19, 244
BstMAI GTCTC 3 cut(s) 36, 300, 475
BstMBI GATC 2 cut(s) 16, 241
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 470
BstUI CGCG 1 cut(s) 419
BsuRI GGCC 2 cut(s) 234, 384
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 3 cut(s) 121, 443, 531
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 5 cut(s) 93, 104, 108, 232, 351
Cfr13I GGNCC 3 cut(s) 343, 370, 383
Cfr42I CCGCGG 1 cut(s) 420
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 223, 238, 512
CviAII CATG 3 cut(s) 337, 361, 509
CviQI GTAC 3 cut(s) 223, 238, 512
DpnI GATC 2 cut(s) 18, 243
DpnII GATC 2 cut(s) 16, 241
Eam1104I CTCTTC 4 cut(s) 75, 249, 310, 440
EarI CTCTTC 4 cut(s) 75, 249, 310, 440
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 343, 370
EcoO109I RGGNCCY 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 3 cut(s) 340, 364, 512
FaiI YATR 6 cut(s) 113, 333, 338, 362, 510, 531
FalI AAGNNNNNCTT 4 cut(s) 79, 111, 130, 162
FatI CATG 3 cut(s) 336, 360, 508
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 3 cut(s) 108, 450, 538
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 1 cut(s) 465
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 234, 384
HapII CCGG 2 cut(s) 125, 471
HgaI GACGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 340, 364, 512
HinfI GANTC 4 cut(s) 22, 68, 308, 461
HpaII CCGG 2 cut(s) 125, 471
HphI GGTGA 3 cut(s) 26, 170, 492
Hpy166II GTNNAC 2 cut(s) 135, 410
Hpy188I TCNGA 4 cut(s) 21, 67, 202, 300
Hpy188III TCNNGA 5 cut(s) 125, 188, 245, 312, 435
Hpy8I GTNNAC 2 cut(s) 135, 410
Hpy99I CGWCG 2 cut(s) 230, 254
HpyAV CCTTC 2 cut(s) 156, 399
HpyCH4IV ACGT 2 cut(s) 484, 519
HpyCH4V TGCA 3 cut(s) 115, 283, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 484, 519
Hsp92II CATG 3 cut(s) 340, 364, 512
Kpn2I TCCGGA 1 cut(s) 124
KspI CCGCGG 1 cut(s) 420
Kzo9I GATC 2 cut(s) 16, 241
LweI GCATC 2 cut(s) 130, 428
MaeI CTAG 1 cut(s) 465
MaeII ACGT 2 cut(s) 484, 519
MalI GATC 2 cut(s) 18, 243
MboI GATC 2 cut(s) 16, 241
MboII GAAGA 6 cut(s) 63, 92, 228, 266, 327, 457
MluCI AATT 2 cut(s) 173, 183
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 4, 250, 256, 313, 334, 396, 406
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 145
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 125, 471
MspR9I CCNGG 1 cut(s) 472
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 472
NdeII GATC 2 cut(s) 16, 241
NlaIII CATG 3 cut(s) 340, 364, 512
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 426
PciI ACATGT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 258
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 22, 68, 461
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 343
PspPI GGNCC 3 cut(s) 343, 370, 383
PspPPI RGGWCCY 1 cut(s) 343
RsaI GTAC 3 cut(s) 224, 239, 513
RsaNI GTAC 3 cut(s) 223, 238, 512
RseI CAYNNNNRTG 1 cut(s) 365
SacII CCGCGG 1 cut(s) 420
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 16, 241
Sau96I GGNCC 3 cut(s) 343, 370, 383
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 472
SetI ASST 7 cut(s) 65, 108, 134, 348, 487, 505, 522
SfaNI GCATC 2 cut(s) 130, 428
Sfr303I CCGCGG 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 420
SinI GGWCC 2 cut(s) 343, 370
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 2 cut(s) 173, 183
SsiI CCGC 4 cut(s) 169, 305, 417, 419
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 373
TaiI ACGT 2 cut(s) 487, 522
TaqI TCGA 3 cut(s) 426, 443, 459
TasI AATT 2 cut(s) 173, 183
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 3 cut(s) 22, 68, 461
TspDTI ATGAA 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 343, 370
XapI RAATTY 2 cut(s) 173, 183
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.